BAC Information

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BAC

Clone NameB6Ng01-287C05
Chromosome7 (Build37)
Map Location 52,122,898 - 52,296,804
singlet/doubletdoublet
Overlap genePtov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12
Upstream geneKlk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp
Downstream genePrrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287C05.bB6Ng01-287C05.g
ACCGA085143GA085144
length8471,093
definitionB6Ng01-287C05.b B6Ng01-287C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,122,898 - 52,123,742)(52,295,713 - 52,296,804)
sequence
gaattcctaggtcattccaggttaggcgtttccgcacatcctggaggggt
caccctcaggtccagactcaagtccctgggcacacacttccggtcctgac
gccttccccagcaggccagacctcaaagcttgaccttcagatcaatctgt
cagaaaactgtgggcagcatcacccctaagaggagcctcccacaaaggat
agccttcactgaggaccgcaatgtggcagcaaccagaaaccaagtaaata
gaacaccctggaggacaattggggggcgggggaggggggaatcctaagga
agctagagtctacctgaaccaaaacgtttacctgaatgcatgctgaacag
tggtgccaaacatggccacgtgtcccctcctccaccccagggtgcaaact
aaactctttttccggccaaaacatttccaaaagaccagtcggtctcctgg
gccagtctctaaccagactagacacactccaggccagagacccttctgat
tgtcaccaacgcatctctgctctctgctaaagctcgtgagtcctttatac
ccggtgtgatgacaaaccagaaagttctcccggtgacttaagtagcagaa
gagcctaggtcttcactgctgaggggccttcctgatggttctgcagaccc
aagcccctcaggattacagcaaatccgcacactggcttgcctggggctgg
gtgtgcagtgagacactacaagtgtcagcatgtacacctccacacgtcgg
tgaaaatcaggcaacacacttaggaaccttaacaaattcctaaaactatt
cagtgcgggggtgagggataaaccatttaaaagcttgtgtgttgcct
gaattcatgacaagtacagaagctattatttcttgagaatcttttgagag
gtggacctaacagttgtttctgttttgttgggtttgttgttttttttctt
tgtttgtttgtttgtttgtttttggttggtttgttttgtttttagtactg
ggagtttaaggcaaggtctcactgagttcccaaagctggcctgagcctca
ccgtgtgtgtaacctgggcagattacaagcatcctacacttctgccggtt
ttctagccctggcgagcagggttcaaagcactaccttctctagccccatc
ttacaggtcagacaggccagtgggcctttggaagggccccattcactgac
cagcgctgggacaggagccagggccatccatctgatcctactgaccagtt
ggtgtgggtcagggaaggggccaggcaaggactcagatgcttaaaatact
tctcaagtgtgagcgaccgcaggggcacagagccctgaggccatacctcc
tattggggtcagactcctagaggtgagcagggtgggtgtgccctgcgccg
ggttcactggattccgttatacttctacttaggagctgggctgccatctt
gtcattccccagcctcagttggctccaccacagctgatgacaggagctcc
tcccaggtgtgtattgacgtgcattcacgtgacctggcctgtccttctca
gtgatggcggctcccacacagaaagtgctgggaatggtggagctgtcgct
ctggtcctgagctgtcaaatactcagaaaatacagaggtagtatgtcagc
tttgctgggattttcttctggcatcccacgccccctgatgatctgggcat
gtcgtttttgaggctgaggccggaaggtccttgactgaatccatgatgcc
cagcgcttggcaagtggagcagtgcaggagtctgaggtcagcctaggtac
atgagatttcaaatgaagcaaaagctaggggacgtctgtttttgacgtct
gttttgaggccttactgaacctccatccgacagctctctgatgtggtatt
ctaacttgaaaactcccagtgctgagagtggaatcccttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52122898_52123742
seq2: B6Ng01-287C05.b_48_894

seq1  GAATTCCTAGGTCATTCCAGGTTAGGCGTTTCCGCACATCCTGGAGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTCATTCCAGGTTAGGCGTTTCCGCACATCCTGGAGGGGT  50

seq1  CACCCTCAGGTCCAGACTCAAGTCCCTGGGCACACACTTCCGGTCCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCAGGTCCAGACTCAAGTCCCTGGGCACACACTTCCGGTCCTGAC  100

seq1  GCCTTCCCCAGCAGGCCAGACCTCAAAGCTTGACCTTCAGATCAATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCCAGCAGGCCAGACCTCAAAGCTTGACCTTCAGATCAATCTGT  150

seq1  CAGAAAACTGTGGGCAGCATCACCCCTAAGAGGAGCCTCCCACAAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTGTGGGCAGCATCACCCCTAAGAGGAGCCTCCCACAAAGGAT  200

seq1  AGCCTTCACTGAGGACCGCAATGTGGCAGCAACCAGAAACCAAGTAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCACTGAGGACCGCAATGTGGCAGCAACCAGAAACCAAGTAAATA  250

seq1  GAACACCCTGGAGGACAATTGGGGGGCGGGGGAGGGGGGAATCCTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCTGGAGGACAATTGGGGGGCGGGGGAGGGGGGAATCCTAAGGA  300

seq1  AGCTAGAGTCTACCTGAACCAAAACGTTTACCTGAATGCATGCTGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGTCTACCTGAACCAAAACGTTTACCTGAATGCATGCTGAACAG  350

seq1  TGGTGCCAAACATGGCCACGTGTCCCCTCCTCCACCCCAGGGTGCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCAAACATGGCCACGTGTCCCCTCCTCCACCCCAGGGTGCAAACT  400

seq1  AAACTCTTTTTCCGGCCAAAACATTTCCAAAAGACCAGTCGGTCTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTTTCCGGCCAAAACATTTCCAAAAGACCAGTCGGTCTCCTGG  450

seq1  GCCAGTCTCTAACCAGACTAGACACACTCCAGGCCAGAGACCCTTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTCTAACCAGACTAGACACACTCCAGGCCAGAGACCCTTCTGAT  500

seq1  TGTCACCAACGCATCTCTGCTCTCTGCTAAAGCTCGTGAGTCCTTTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAACGCATCTCTGCTCTCTGCTAAAGCTCGTGAGTCCTTTATAC  550

seq1  CCGGTGTGATGACAAACCAGAAAGTTCTCCCGGTGACTTAAGTAGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTGATGACAAACCAGAAAGTTCTCCCGGTGACTTAAGTAGCAGAA  600

seq1  GAGCCTAGGTCTTCACTGCTGAGGGGCCTTCCTGATGGTTCTGCAGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGGTCTTCACTGCTGAGGGGCCTTCCTGATGGTTCTGCAGACCC  650

seq1  AAG-CCCTCAGGATTACAGCAAATCCGCACACTGGC-TGCCT-GGGCTGG  697
      ||| |||||||||||||||||||||||||||||||| ||||| |||||||
seq2  AAGCCCCTCAGGATTACAGCAAATCCGCACACTGGCTTGCCTGGGGCTGG  700

seq1  GTGTGCAGTGAGACACTACAAGTGTCAGCATGTACACCACCACACAGTCG  747
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GTGTGCAGTGAGACACTACAAGTGTCAGCATGTACACCTCCACAC-GTCG  749

seq1  GTGAAAATCAGGCAAACACACTTAGGAACCTAAACAAAATCC-AAAACTA  796
      ||||||||||||| ||||||||||||||||| |||||| ||| |||||||
seq2  GTGAAAATCAGGC-AACACACTTAGGAACCTTAACAAATTCCTAAAACTA  798

seq1  TTCAAGTGC-GGGGTGAGGGAT-AACCATTAAGAGGCTTGTGTGTTTGCC  844
      ||| ||||| |||||||||||| ||||||| | | ||||||||| |||||
seq2  TTC-AGTGCGGGGGTGAGGGATAAACCATTTAAAAGCTTGTGTG-TTGCC  846

seq1  T  845
      |
seq2  T  847

seq1: chr7_52295713_52296804
seq2: B6Ng01-287C05.g_67_1159 (reverse)

seq1  CCCCAA-GGAATCCACTCCTAGCACTGGGA---TTCTAAGTAG-ATACCA  45
      |||||| ||| |||||||  ||||||||||   ||| |  ||| ||||||
seq2  CCCCAAGGGATTCCACTCTCAGCACTGGGAGTTTTCAAGTTAGAATACCA  50

seq1  CCACAGAGAGCTTGTCGGATGGA-GCTCAGTAAGGCCTCAAAACAGACGT  94
      |  |||||||| ||||||||||| | ||||||||||||||||||||||||
seq2  CATCAGAGAGC-TGTCGGATGGAGGTTCAGTAAGGCCTCAAAACAGACGT  99

seq1  CAAAAACAGACGT-CCCTAGCTTTTGCTTCATTTGAAATCTCATGTACCC  143
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  CAAAAACAGACGTCCCCTAGCTTTTGCTTCATTTGAAATCTCATGTA-CC  148

seq1  TAGGCTGACCTCAGACTCCTGCACTGGCTCCACTTGCCAAGCGCTGGGCA  193
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGCTGACCTCAGACTCCTGCACT-GCTCCACTTGCCAAGCGCTGGGCA  197

seq1  TCATGGACTCAGTCAAGGACCTTCCGGCCTCAGCCTCAAAAACGACATTG  243
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATGGATTCAGTCAAGGACCTTCCGGCCTCAGCCTCAAAAACGACA-TG  246

seq1  CCCAGATCATCAGGGGGCGTGGGATGCCAGAAAGAAAATCCCAGCAAAGC  293
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCAGATCATCAGGGGGCGTGGGATGCCAG-AAGAAAATCCCAGCAAAGC  295

seq1  TGACATACTACCTCTGTATTTTCCTGAGTATTTGACAGCTCAGGACCAGA  343
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGACATACTACCTCTGTATTTT-CTGAGTATTTGACAGCTCAGGACCAGA  344

seq1  GCGACAGCTCCACCATTCCCAGCACTTTCTGTGTGGGAGCCGCCATCACT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACAGCTCCACCATTCCCAGCACTTTCTGTGTGGGAGCCGCCATCACT  394

seq1  GAGAAGGACAGGCCAGGTCACGTGAATGCACGTCAATACACACCTGGGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGACAGGCCAGGTCACGTGAATGCACGTCAATACACACCTGGGAG  444

seq1  GAGCTCCTGTCATCAGCTGTGGTGGAGCCAACTGAGGCTGGGGAATGACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTGTCATCAGCTGTGGTGGAGCCAACTGAGGCTGGGGAATGACA  494

seq1  AGATGGCAGCCCAGCTCCTAAGTAGAAGTATAACGGAATCCAGTGAACCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGCCCAGCTCCTAAGTAGAAGTATAACGGAATCCAGTGAACCC  544

seq1  GGCGCAGGGCACACCCACCCTGCTCACCTCTAGGAGTCTGACCCCAATAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAGGGCACACCCACCCTGCTCACCTCTAGGAGTCTGACCCCAATAG  594

seq1  GAGGTATGGCCTCAGGGCTCTGTGCCCCTGCGGTCGCTCACACTTGAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGCCTCAGGGCTCTGTGCCCCTGCGGTCGCTCACACTTGAGAA  644

seq1  GTATTTTAAGCATCTGAGTCCTTGCCTGGCCCCTTCCCTGACCCACACCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAAGCATCTGAGTCCTTGCCTGGCCCCTTCCCTGACCCACACCA  694

seq1  ACTGGTCAGTAGGATCAGATGGATGGCCCTGGCTCCTGTCCCAGCGCTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCAGTAGGATCAGATGGATGGCCCTGGCTCCTGTCCCAGCGCTGG  744

seq1  TCAGTGAATGGGGCCCTTCCAAAGGCCCACTGGCCTGTCTGACCTGTAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAATGGGGCCCTTCCAAAGGCCCACTGGCCTGTCTGACCTGTAAG  794

seq1  ATGGGGCTAGAGAAGGTAGTGCTTTGAACCCTGCTCGCCAGGGCTAGAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTAGAGAAGGTAGTGCTTTGAACCCTGCTCGCCAGGGCTAGAAA  844

seq1  ACCGGCAGAAGTGTAGGATGCTTGTAATCTGCCCAGGTTACACACACGGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCAGAAGTGTAGGATGCTTGTAATCTGCCCAGGTTACACACACGGT  894

seq1  GAGGCTCAGGCCAGCTTTGGGAACTCAGTGAGACCTTGCCTTAAACTCCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGGCCAGCTTTGGGAACTCAGTGAGACCTTGCCTTAAACTCCC  944

seq1  AGTACTAAAAACAAAACAAACCAACCAAAAACAAACAAACAAACAAACAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAAAAACAAAACAAACCAACCAAAAACAAACAAACAAACAAACAA  994

seq1  AGAAAAAAAACAACAAACCCAACAAAACAGAAACAACTGTTAGGTCCACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAACAACAAACCCAACAAAACAGAAACAACTGTTAGGTCCACC  1044

seq1  TCTCAAAAGATTCTCAAGAAATAATAGCTTCTGTACTTGTCATGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAGATTCTCAAGAAATAATAGCTTCTGTACTTGTCATGAATTC  1093