BAC Information

Click to search

BAC

Clone NameB6Ng01-287I17
Chromosome7 (Build37)
Map Location 65,667,830 - 65,669,068
singlet/doubletsinglet
Overlap genenone
Upstream geneGabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I17.bB6Ng01-287I17.g
ACCGA085440GA085441
length1,2131,199
definitionB6Ng01-287I17.b B6Ng01-287I17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctagtggtaacaagtaatatcctagaagattctcaaatccaa
atccatgcccaacagagggagccaaagtcagcaccacaggcggggtccac
ctgttatccatacacagcacccctatgtgtgctggcaattctcagttccc
ctgaattgtgatttggttatggtatgcttgtagtccccaaaagttcatgt
gttgggagcttggtcctccatgtggcaatatgggaggtagaggaattatc
aggagttggaatctaatggtcctttgttagagagtgttagggttagagcc
taacacttaacagttctgatagctattcctggttgtcaacttgactacat
ctggaatgaactacagtcaagaaatggagggcacatggtgatccatacct
tgagactagaagatacaggtttctaaaccagatcttgacatattggccat
gatatgcttaggcccaagcaaaggttttaatcccaggagactgagataag
cagatctctgagttcaaggtcaacctgagacaaagcaaattccagatcca
ggtgtggtagtatacgcctttaatttgggccacaccttctgccagaggcc
tacataaggacattaaaagaaggaagattcgctcttcttcacctgcttgt
aattacttgctagcatttctgttggaacctacttcaacagaagacgaact
taaactccttgtaggactgagcaactgctagattcttggacttaccactc
acagctgcccattgttgcattagttggcctactgactgtaaatcattaca
ataaattctcttaatataaagagataattccttaagttctgttactctag
agaaccctaactaagacaacagatataacaagctgggcttggcaactcat
tttctacaggccaattacagaacagacatagtgaaagcactaaagggaaa
gatgtatttgctgtgactacatcacaagaggacaaagaggttcaaggact
cttcctcactcttcttcaggtcctggcttgagtttagtttaatgaagaac
aaatgtattgcatagctgagcagtctagttaggtgttgacctaccatcat
ccatccgtcatagtctaggctcagtcctacctataagaatgcctgatagg
tatccgaaccgttctaatctctttcctggagaacagttcactttgctgcc
agatttcttttcc
gaattcattagctctgtttccttatattcacgaatatataataatgtatt
tattactcttcagctatttaataacaaatggaaggaaaacttccaaacta
tttttacaaagctaatatgcactaataccaagaaagggatttagaacaat
tcaaatagagatataagataatggaagcgctggcagatatatagttataa
tagagaaagagagctgagtggaaattcaagaaaatgagatttgagcaaag
tacctaatagggtgataacatattcccagcctcttccattgtcatcttaa
aatctgctgcctgatccaatatgccttttattccattatcttacttgaaa
ggccccaaatcttttcttttttcaatttttattagatattttgttcattt
acatttcaaatgctatcctgaaagtctcatatacctctccgcccccaccc
tgctcccttacccaccaactcccacttcttggccctggcattctccttcc
tggggcaagaccaaggggcctctcttcctattgatggccgactaggccat
cttctgctacatatgcagctagagacacgagctctgggggtactggttag
ttcatattgttgttccatttatagggttgcagaccccttcagctccttgg
atactttctctagctcctccattaggggccctgtgttccatctaatagat
gactgtgagcatccacttctgtatttggcagacactggcatagcttcaca
agagacagctatatcagggtcctttcaggaaaatcttgctggcatatgca
acagtgtctgcatttattggctaattatggaatggatccctgagtggggt
agtcactggatggtccatccttttgtcttagcacaaaactttgtctctgt
aactccttccataggtattttgttccctatttctagagaaatgaagtatc
aacatgttggtcttcctttcttgattttcttgtgtttgaaaattgtatct
tcgtattcttagtttctgggctaatattccactatcagtgtgtgcatatc
agtgacttctttgtgattggctaacttcactcagatgatgtcttcaagtc
atccatttctagaaattccataaattcaatttttaatactgaaatgaacg
caattgtagttaagtatacaaattttcatagtgcacatcaatcatccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_65667830_65669068
seq2: B6Ng01-287I17.b_46_1258

seq1  GAATTCTTCTAGTGGTAACAAGTAATATCCTAGAAGATTCTCAAATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAGTGGTAACAAGTAATATCCTAGAAGATTCTCAAATCCAA  50

seq1  ATCCATGCCCAACAGAGGGAGCCAAAGTCAGCACCACAGGCGGGGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCCCAACAGAGGGAGCCAAAGTCAGCACCACAGGCGGGGTCCAC  100

seq1  CTGTTATCCATACACAGCACCCCTATGTGTGCTGGCAATTCTCAGTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCCATACACAGCACCCCTATGTGTGCTGGCAATTCTCAGTTCCC  150

seq1  CTGAATTGTGATTTGGTTATGGTATGCTTGTAGTCCCCAAAAGTTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGTGATTTGGTTATGGTATGCTTGTAGTCCCCAAAAGTTCATGT  200

seq1  GTTGGGAGCTTGGTCCTCCATGTGGCAATATGGGAGGTAGAGGAATTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAGCTTGGTCCTCCATGTGGCAATATGGGAGGTAGAGGAATTATC  250

seq1  AGGAGTTGGAATCTAATGGTCCTTTGTTAGAGAGTGTTAGGGTTAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGAATCTAATGGTCCTTTGTTAGAGAGTGTTAGGGTTAGAGCC  300

seq1  TAACACTTAACAGTTCTGATAGCTATTCCTGGTTGTCAACTTGACTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTAACAGTTCTGATAGCTATTCCTGGTTGTCAACTTGACTACAT  350

seq1  CTGGAATGAACTACAGTCAAGAAATGGAGGGCACATGGTGATCCATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAACTACAGTCAAGAAATGGAGGGCACATGGTGATCCATACCT  400

seq1  TGAGACTAGAAGATACAGGTTTCTAAACCAGATCTTGACATATTGGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAGAAGATACAGGTTTCTAAACCAGATCTTGACATATTGGCCAT  450

seq1  GATATGCTTAGGCCCAAGCAAAGGTTTTAATCCCAGGAGACTGAGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTTAGGCCCAAGCAAAGGTTTTAATCCCAGGAGACTGAGATAAG  500

seq1  CAGATCTCTGAGTTCAAGGTCAACCTGAGACAAAGCAAATTCCAGATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGAGTTCAAGGTCAACCTGAGACAAAGCAAATTCCAGATCCA  550

seq1  GGTGTGGTAGTATACGCCTTTAATTTGGGCCACACCTTCTGCCAGAGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTAGTATACGCCTTTAATTTGGGCCACACCTTCTGCCAGAGGCC  600

seq1  TACATAAGGACATTAAAAGAAGGAAGATTCGCTCTTCTTCACCTGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGGACATTAAAAGAAGGAAGATTCGCTCTTCTTCACCTGCTTGT  650

seq1  AATTACTTGCTAGCATTTCTGTTGGAACCTACTTCAACAGAAGACGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGCTAGCATTTCTGTTGGAACCTACTTCAACAGAAGACGAACT  700

seq1  TAAACTCCTTGTAGGACTGAGCAACTGCTAGATTCTTGGACTTACCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTTGTAGGACTGAGCAACTGCTAGATTCTTGGACTTACCACTC  750

seq1  ACAGCTGCCCATTGTTGCATTAGTTGGCCTACTGACTGTAAATCATTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCCCATTGTTGCATTAGTTGGCCTACTGACTGTAAATCATTACA  800

seq1  ATAAATTCTCTTAATATAAAGAGATAATTCCTTAAGTTCTGTTACTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCTCTTAATATAAAGAGATAATTCCTTAAGTTCTGTTACTCTAG  850

seq1  AGAACCCTAACTAAGACAACAGATATAACAAAGCTGGGCTTGGCAACTCA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAACCCTAACTAAGACAACAGATATAAC-AAGCTGGGCTTGGCAACTCA  899

seq1  TTTTCTACAGGCCAATTACAGAAACAAGACATAGTGAAAAGCACTAAAGG  950
      |||||||||||||||||||||||   |||||||||| |||||||||||||
seq2  TTTTCTACAGGCCAATTACAGAA--CAGACATAGTG-AAAGCACTAAAGG  946

seq1  GAAAGATGTATTTGCTGTGACTACATCACAAAGAGGAACAAAGAGGTTCA  1000
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  GAAAGATGTATTTGCTGTGACTACATCAC-AAGAGG-ACAAAGAGGTTCA  994

seq1  AGGACTCTTCCCTCAACCTCTTCTTCAGGGTCCTGGCTTGAGGTTTAGGT  1050
      ||||||||| |||||  |||||||||| ||||||||||||| ||||| ||
seq2  AGGACTCTT-CCTCA--CTCTTCTTCA-GGTCCTGGCTTGA-GTTTA-GT  1038

seq1  TTAAATGGAAGACAAAATGTA-TGCATAGCTGAGCAGTCTAGTTAAGGTG  1099
      ||||   |||||  ||||||| |||||||||||||||||||||| |||||
seq2  TTAA--TGAAGAACAAATGTATTGCATAGCTGAGCAGTCTAGTT-AGGTG  1085

seq1  TGAACCTACCCATCATTCATCCGTCATAGTCTAGGCTCCAGTCTCACCTA  1149
      |  ||||| ||||||| |||||||||||||||||||| |||||  |||||
seq2  TTGACCTA-CCATCATCCATCCGTCATAGTCTAGGCT-CAGTCCTACCTA  1133

seq1  TAAGATGGCCTGATAAGTTATCAGAACTGTCTAAAATCTCTTTCCTGAAG  1199
      |||||  ||||||| || |||| |||| || |  ||||||||||||| ||
seq2  TAAGAATGCCTGAT-AGGTATCCGAACCGT-TCTAATCTCTTTCCTGGAG  1181

seq1  ACAAGTTCCATCTTTGGCTGGCACCAGAGTTTTCTTTTCC  1239
      |  |||||   |||| ||||   |||||  ||||||||||
seq2  AACAGTTC--ACTTT-GCTG---CCAGA--TTTCTTTTCC  1213