BAC Information

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BAC

Clone NameB6Ng01-287N06
Chromosome7 (Build37)
Map Location 111,301,851 - 111,427,161
singlet/doubletdoublet
Overlap geneE030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823
Upstream geneOlfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl
Downstream geneTrim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287N06.bB6Ng01-287N06.g
ACCGA085647GA085648
length986737
definitionB6Ng01-287N06.b B6Ng01-287N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,301,851 - 111,302,828)(111,426,425 - 111,427,161)
sequence
gaattctgcggactagcctgataatttttaaagcgtgatgagcaagcatc
agaaaaaaagagggcaacatttctgtagctaattttttgttttattgggt
tttttggtttttagggttttttgtttttgtttttagtgctaagaattgaa
taatgagttttcttcccactgtgctaagcattgaatctagggcctggtac
atgctaaacacgtgattcagcattcatctatctcccaaaccctaactaac
actgtgttttgtttcttaatcaattccttccaggccattattaacacctt
aatgtgttgactgagatattgattacatacaaaactaaattaatcagtgt
acttcaatcatttgggtggatagctattaaggaagttgtccttctagaag
gaagaaagaggacagtcatagagtgtcctatggcttgttgagcttaatag
gtttagatggcgctagagccccagaagaccttttcatgggagagctcggt
accttttgctttagtgtcaggaaggtgaggtcataatttattaagaatcc
atcattataaacatagagcctgtgatcccaagggcagtaattgatgccgt
gcagagtttccagcatcttgtccaacaggatgctgaggtggtgttcctgc
ccagtggttgtgtcataagcataaaatatttcttcttgacgagtgcttag
tgaacgcaaagcatagagcaccccacagacccatgaaggcccctgaaaga
gcaggcttatactggctggtataccacgtttgctcaacttctagggtgct
atcattgagaaagactacaaccagattgccttttgctctcctctgtgggc
atataacacccacagtcccttctcatcaccaagtaaaatctattgtcagt
cccaggcgcaaaagcataggaagaagcggttgttgtaggtggcaccaagc
aaatgggcctcccaacactaagggtgttagaggaaa
gaattcatatcacaatcctttaaaagaaaggtagaaatccttagctttct
atctttccagaaggttttggcctttggatagaacaacagtcctactaagc
acacagcttgactctgctacaattcctttcttacaggagcagctgcaggt
agttctgcaaaggctgatggcagataagaaagaatttgaaaactggaaag
atgaacttcagaaggatagaacttactgggaggcaagtggggacccttcc
taagggtgtcagcctgatgcctgggagggacctgggcaagaagcttctgg
ggtctttacttcctgggagttgatgaggccaggaaaccttgatactcctc
cctactggttcccctggctggagatgtagagtcagtgtatcacacctgag
ctgggctctgtgaggagctggcaccttggaggatgcttggtcagaatgga
tactggatcatttctatggtgccttctgaaactgagtctacagaaaaaga
tacttgtgaatgcgtgggtaatggatatgtgatctgtgtaacttctgcca
gggagttaaaagcagaatgtaatggcatgtatgatggcatattcctttaa
tcccagcagctaggaggcaggaacagatatctgtaaggtaaagactggtc
ttgtgtacatagcaagtactaggtcaactatagctacaaggtaaaacctg
gtctagatagggaggtaggtaggaaagagggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_111301851_111302828
seq2: B6Ng01-287N06.b_49_1034

seq1  GAATTCTGCGGACTAGCCTGATAATTTTTAAAGCGTGATGAGCAAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGGACTAGCCTGATAATTTTTAAAGCGTGATGAGCAAGCATC  50

seq1  AGAAAAAAAGAGGGCAACATTTCTGTAGCTAATTTTTTGTTTTATTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGAGGGCAACATTTCTGTAGCTAATTTTTTGTTTTATTGGGT  100

seq1  TTTTTGGTTTTTAGGGTTTTTTGTTTTTGTTTTTAGTGCTAAGAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTAGGGTTTTTTGTTTTTGTTTTTAGTGCTAAGAATTGAA  150

seq1  TAATGAGTTTTCTTCCCACTGTGCTAAGCATTGAATCTAGGGCCTGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTTTTCTTCCCACTGTGCTAAGCATTGAATCTAGGGCCTGGTAC  200

seq1  ATGCTAAACACGTGATTCAGCATTCATCTATCTCCCAAACCCTAACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAACACGTGATTCAGCATTCATCTATCTCCCAAACCCTAACTAAC  250

seq1  ACTGTGTTTTGTTTCTTAATCAATTCCTTCCAGGCCATTATTAACACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTGTTTCTTAATCAATTCCTTCCAGGCCATTATTAACACCTT  300

seq1  AATGTGTTGACTGAGATATTGATTACATACAAAACTAAATTAATCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTGACTGAGATATTGATTACATACAAAACTAAATTAATCAGTGT  350

seq1  ACTTCAATCATTTGGGTGGATAGCTATTAAGGAAGTTGTCCTTCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATCATTTGGGTGGATAGCTATTAAGGAAGTTGTCCTTCTAGAAG  400

seq1  GAAGAAAGAGGACAGTCATAGAGTGTCCTATGGCTTGTTGAGCTTAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGGACAGTCATAGAGTGTCCTATGGCTTGTTGAGCTTAATAG  450

seq1  GTTTAGATGGCGCTAGAGCCCCAGAAGACCTTTTCATGGGAGAGCTCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATGGCGCTAGAGCCCCAGAAGACCTTTTCATGGGAGAGCTCGGT  500

seq1  ACCTTTTGCTTTAGTGTCAGGAAGGTGAGGTCATAATTTATTAAGAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGCTTTAGTGTCAGGAAGGTGAGGTCATAATTTATTAAGAATCC  550

seq1  ATCATTATAAACATAGAGCCTGTGATCCCAAGGGCAGTAATTGATGCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATAAACATAGAGCCTGTGATCCCAAGGGCAGTAATTGATGCCGT  600

seq1  GCAGAGTTTCCAGCATCTTGTCCAACAGGATGCTGAGGTGGTGTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTTCCAGCATCTTGTCCAACAGGATGCTGAGGTGGTGTTCCTGC  650

seq1  CCAGTGGTTGTGTCATAAGCATAAAATATTTCTTCTTGACGAGTGCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTTGTGTCATAAGCATAAAATATTTCTTCTTGACGAGTGCTTAG  700

seq1  TGAACGCAAAGCATAGAGCACCCCACAGA-CCATGAAGGCCCCTGAAAGA  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAACGCAAAGCATAGAGCACCCCACAGACCCATGAAGGCCCCTGAAAGA  750

seq1  GCAGGCTTATACTGGCTGGTATACCACGTTTGCTCAACTTCTAGGGTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTATACTGGCTGGTATACCACGTTTGCTCAACTTCTAGGGTGCT  800

seq1  ATCATTGAG-AAGACTTACAACCAGATTGCC-TTTGCTCTCCTCTGT-GG  846
      ||||||||| ||||| ||||||||||||||| ||||||||||||||| ||
seq2  ATCATTGAGAAAGAC-TACAACCAGATTGCCTTTTGCTCTCCTCTGTGGG  849

seq1  CATATAACACCCACAGTCCCTTCTCATCACC-AGTAAAATCTA-TGTCAG  894
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  CATATAACACCCACAGTCCCTTCTCATCACCAAGTAAAATCTATTGTCAG  899

seq1  TCCAAGGCGCAAAAGCATAGG-AGAAGCGGTTGTTGTAGGTGGCACCAGG  943
      ||| ||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TCCCAGGCGCAAAAGCATAGGAAGAAGCGGTTGTTGTAGGTGGCACCAAG  949

seq1  C-AATGGGCGTCGCAGCACT-AGGGTGTTAGAGGAAA  978
      | ||||||| || || |||| ||||||||||||||||
seq2  CAAATGGGCCTCCCAACACTAAGGGTGTTAGAGGAAA  986

seq1: chr7_111426425_111427161
seq2: B6Ng01-287N06.g_67_803 (reverse)

seq1  TTCCTTCCCTCTTTCCTACCTACCTCCCTATCTAGACCAGGTTTTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTCTTTCCTACCTACCTCCCTATCTAGACCAGGTTTTACCTT  50

seq1  GTAGCTATAGTTGACCTAGTACTTGCTATGTACACAAGACCAGTCTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATAGTTGACCTAGTACTTGCTATGTACACAAGACCAGTCTTTAC  100

seq1  CTTACAGATATCTGTTCCTGCCTCCTAGCTGCTGGGATTAAAGGAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGATATCTGTTCCTGCCTCCTAGCTGCTGGGATTAAAGGAATATG  150

seq1  CCATCATACATGCCATTACATTCTGCTTTTAACTCCCTGGCAGAAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATACATGCCATTACATTCTGCTTTTAACTCCCTGGCAGAAGTTAC  200

seq1  ACAGATCACATATCCATTACCCACGCATTCACAAGTATCTTTTTCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCACATATCCATTACCCACGCATTCACAAGTATCTTTTTCTGTAG  250

seq1  ACTCAGTTTCAGAAGGCACCATAGAAATGATCCAGTATCCATTCTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTCAGAAGGCACCATAGAAATGATCCAGTATCCATTCTGACCA  300

seq1  AGCATCCTCCAAGGTGCCAGCTCCTCACAGAGCCCAGCTCAGGTGTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTCCAAGGTGCCAGCTCCTCACAGAGCCCAGCTCAGGTGTGATA  350

seq1  CACTGACTCTACATCTCCAGCCAGGGGAACCAGTAGGGAGGAGTATCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCTACATCTCCAGCCAGGGGAACCAGTAGGGAGGAGTATCAAG  400

seq1  GTTTCCTGGCCTCATCAACTCCCAGGAAGTAAAGACCCCAGAAGCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGGCCTCATCAACTCCCAGGAAGTAAAGACCCCAGAAGCTTCTT  450

seq1  GCCCAGGTCCCTCCCAGGCATCAGGCTGACACCCTTAGGAAGGGTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTCCCTCCCAGGCATCAGGCTGACACCCTTAGGAAGGGTCCCCA  500

seq1  CTTGCCTCCCAGTAAGTTCTATCCTTCTGAAGTTCATCTTTCCAGTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCCCAGTAAGTTCTATCCTTCTGAAGTTCATCTTTCCAGTTTTC  550

seq1  AAATTCTTTCTTATCTGCCATCAGCCTTTGCAGAACTACCTGCAGCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTCTTATCTGCCATCAGCCTTTGCAGAACTACCTGCAGCTGCT  600

seq1  CCTGTAAGAAAGGAATTGTAGCAGAGTCAAGCTGTGTGCTTAGTAGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGAAAGGAATTGTAGCAGAGTCAAGCTGTGTGCTTAGTAGGACT  650

seq1  GTTGTTCTATCCAAAGGCCAAAACCTTCTGGAAAGATAGAAAGCTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTATCCAAAGGCCAAAACCTTCTGGAAAGATAGAAAGCTAAGGA  700

seq1  TTTCTACCTTTCTTTTAAAGGATTGTGATATGAATTC  737
      |||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTTTCTTTTAAAGGATTGTGATATGAATTC  737