BAC Information

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BAC

Clone NameB6Ng01-288B15
Chromosome7 (Build37)
Map Location 90,734,520 - 90,886,143
singlet/doubletdoublet
Overlap geneTmc3, Stard5, Il16, Phgdh-ps1
Upstream geneAdamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
Downstream geneLOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288B15.bB6Ng01-288B15.g
ACCGA085853GA085854
length6051,141
definitionB6Ng01-288B15.b B6Ng01-288B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,734,520 - 90,735,124)(90,884,986 - 90,886,143)
sequence
gaattcctcttctcctctctcctttgctgtcgtttgccatgagaacttat
tccttttcactgaccactgaagtaatagaatctacaaatgagtttctaag
gactgctgacattaccaaattctgtcagtctatggacacaaacacacaca
cacacacacacacacactacagatgaccctgggacagtgagatgcagaag
ttacacaagaaagatgccctttgctgaaagcaattctgtaatcagatttc
ctccatgattccccttttccacccagtaactccgatgacagctttaatgc
tgatgaaacgggagacagcagtgatccggaacaaatcttccagaatatac
agtttcagaaagatctcatggcaaatatccgctgcagaccctggaccatg
gggcagaaactgcgggcactgaggtaaggaagggcctacacagcattcac
taataagagttttgattcaagaactgtgaccatcctgcatctcactcaga
gaagttccaaagatgcttgatgggaccatctagacatagctgttatagtg
cctgtgaatatgtgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgt
gaattcagctgctgagttctaaccaggacagagatctcctggctgtctcc
tctctgccttcttcgggcagccatgaggcctatgggctgctggagggagg
gtcagtcttcctccgtacgatggagtttctagtttgaagtgtagctcatg
caaacaagtcagtgggggatcagtcagggttctgactatacttgggaatg
agtctgtctcaagagaaaatggattacctgagaattgagggagatgaaaa
aaactaagacccaggccagataataggaagggtttggctctggcgcaaag
ggctccaggatcctcctgaggtctagggtacggattcttcaacttttctg
ccagagggaagtagccacagtgaacaacgcccattgcagccccagttaca
ctgttttcataacttcaagagacactgtggattagcagaaccaacagtgc
tgaccaatgcccccagccccaagcacttcagaaattcctgcaccttcccc
cagacttagtcccacaatagggggctgtccccatgcctgctgacaaaggc
gactttatgtctgattgccctcccaagatgtctcttgtgaccaccctggt
tgcctagcagtggatgggcttccacagtagtcttgtatggaatgccacgg
gcatcctacagcttacccccacacccttactaatgcataggacccggaac
atttggtagagtgtcaaaaaacatgccagagaggccacagaggctgtgct
cagaagaggagtatgggacattctcttgggcagatgttttagatgtcacc
ttgagatctcaggttctctgaatggatgagagggagaaagacatgttggt
cacatgatataagcactcaggaaggtcatgttttctttttcttttaaaaa
attatttatttatttatttattataatttatgtgagtacactgtagatgt
cgtcagacataccagatggggcatcggatcccattacagatgtgtgagcc
atcatgtgtttctggaattgactcagacctctggagagcagtcagtgctc
tactgctgagccatcttcttcagccatgtcatgtttcctaggactggttt
catgtgcgtcatgagtacgtaattgcctgtaggcttggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_90734520_90735124
seq2: B6Ng01-288B15.b_45_649

seq1  GAATTCCTCTTCTCCTCTCTCCTTTGCTGTCGTTTGCCATGAGAACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCTCCTCTCTCCTTTGCTGTCGTTTGCCATGAGAACTTAT  50

seq1  TCCTTTTCACTGACCACTGAAGTAATAGAATCTACAAATGAGTTTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCACTGACCACTGAAGTAATAGAATCTACAAATGAGTTTCTAAG  100

seq1  GACTGCTGACATTACCAAATTCTGTCAGTCTATGGACACAAACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGACATTACCAAATTCTGTCAGTCTATGGACACAAACACACACA  150

seq1  CACACACACACACACACTACAGATGACCCTGGGACAGTGAGATGCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTACAGATGACCCTGGGACAGTGAGATGCAGAAG  200

seq1  TTACACAAGAAAGATGCCCTTTGCTGAAAGCAATTCTGTAATCAGATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAGAAAGATGCCCTTTGCTGAAAGCAATTCTGTAATCAGATTTC  250

seq1  CTCCATGATTCCCCTTTTCCACCCAGTAACTCCGATGACAGCTTTAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGATTCCCCTTTTCCACCCAGTAACTCCGATGACAGCTTTAATGC  300

seq1  TGATGAAACGGGAGACAGCAGTGATCCGGAACAAATCTTCCAGAATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAACGGGAGACAGCAGTGATCCGGAACAAATCTTCCAGAATATAC  350

seq1  AGTTTCAGAAAGATCTCATGGCAAATATCCGCTGCAGACCCTGGACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAAAGATCTCATGGCAAATATCCGCTGCAGACCCTGGACCATG  400

seq1  GGGCAGAAACTGCGGGCACTGAGGTAAGGAAGGGCCTACACAGCATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAAACTGCGGGCACTGAGGTAAGGAAGGGCCTACACAGCATTCAC  450

seq1  TAATAAGAGTTTTGATTCAAGAACTGTGACCATCCTGCATCTCACTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAGTTTTGATTCAAGAACTGTGACCATCCTGCATCTCACTCAGA  500

seq1  GAAGTTCCAAAGATGCTTGATGGGACCATCTAGACATAGCTGTTATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCAAAGATGCTTGATGGGACCATCTAGACATAGCTGTTATAGTG  550

seq1  CCTGTGAATATGTGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAATATGTGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  600

seq1  TGTGT  605
      |||||
seq2  TGTGT  605

seq1: chr7_90884986_90886143
seq2: B6Ng01-288B15.g_67_1207 (reverse)

seq1  GCTCCA--CTTACAAGCAATTACTTAACTTCCATGACGCACATTGAAAAC  48
      ||||||  | |||| |||||||| | |||  ||||||||||||   ||||
seq2  GCTCCAAGCCTACAGGCAATTACGT-ACT--CATGACGCACAT--GAAAC  45

seq1  CAGTCTTAAGAAACATGACCATGGGCTGAAG-AGATGGCTCAGCAGTTAA  97
      ||||| || ||||||||| ||| |||||||| |||||||||||||||  |
seq2  CAGTCCTAGGAAACATGA-CAT-GGCTGAAGAAGATGGCTCAGCAGT--A  91

seq1  GAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATTTCCAGAAACCA  147
      ||||||||||||||| ||||||||| ||||| ||||  ||||||||| ||
seq2  GAGCACTGACTGCTC-TCCAGAGGT-CTGAG-TCAA--TTCCAGAAA-CA  135

seq1  CATGATGGCTCACAACCATCTGTAATGGGATCCGATGCCCCCTTCTGGTA  197
      ||||||||||||||  ||||||||||||||||||||| |||| |||||||
seq2  CATGATGGCTCACA--CATCTGTAATGGGATCCGATG-CCCCATCTGGTA  182

seq1  TGTCTGACGACATCTACAGTGTACTCACATAAATTATAAATAAATAAATA  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTCTGACGACATCTACAGTGTACTCACATAAATTAT-AATAAATAAATA  231

seq1  AATAAATAATTTTTTAAAAGAAAAAGAAAACATGACCTTCCTGAGTGCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATTTTTTAAAAGAAAAAGAAAACATGACCTTCCTGAGTGCTT  281

seq1  ATTATCATGTGACCAACATGTCTTTCTCCCTCTCATCCATTCAGAGAACC  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TATCATGTGACCAACATGTCTTTCTCCCTCTCATCCATTCAGAGAACC  330

seq1  TGAGATCTCAAGGTGACATCTAAAACATCTGCCCAAGAGAATGTCCCATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTCAAGGTGACATCTAAAACATCTGCCCAAGAGAATGTCCCATA  380

seq1  CTCCTCTTCTGAGCACAGCCTCTGTGGCCTCTCTGGCATGTTTTTTGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCTGAGCACAGCCTCTGTGGCCTCTCTGGCATGTTTTTTGACA  430

seq1  CTCTACCAAATGTTCCGGGTCCTATGCATTAGTAAGGGTGTGGGGGTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAAATGTTCCGGGTCCTATGCATTAGTAAGGGTGTGGGGGTAAG  480

seq1  CTGTAGGATGCCCGTGGCATTCCATACAAGACTACTGTGGAAGCCCATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGATGCCCGTGGCATTCCATACAAGACTACTGTGGAAGCCCATCC  530

seq1  ACTGCTAGGCAACCAGGGTGGTCACAAGAGACATCTTGGGAGGGCAATCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAGGCAACCAGGGTGGTCACAAGAGACATCTTGGGAGGGCAATCA  580

seq1  GACATAAAGTCGCCTTTGTCAGCAGGCATGGGGACAGCCCCCTATTGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAGTCGCCTTTGTCAGCAGGCATGGGGACAGCCCCCTATTGTGG  630

seq1  GACTAAGTCTGGGGGAAGGTGCAGGAATTTCTGAAGTGCTTGGGGCTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGTCTGGGGGAAGGTGCAGGAATTTCTGAAGTGCTTGGGGCTGGG  680

seq1  GGCATTGGTCAGCACTGTTGGTTCTGCTAATCCACAGTGTCTCTTGAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGTCAGCACTGTTGGTTCTGCTAATCCACAGTGTCTCTTGAAGT  730

seq1  TATGAAAACAGTGTAACTGGGGCTGCAATGGGCGTTGTTCACTGTGGCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAGTGTAACTGGGGCTGCAATGGGCGTTGTTCACTGTGGCTA  780

seq1  CTTCCCTCTGGCAGAAAAGTTGAAGAATCCGTACCCTAGACCTCAGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTGGCAGAAAAGTTGAAGAATCCGTACCCTAGACCTCAGGAGG  830

seq1  ATCCTGGAGCCCTTTGCGCCAGAGCCAAACCCTTCCTATTATCTGGCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGAGCCCTTTGCGCCAGAGCCAAACCCTTCCTATTATCTGGCCTG  880

seq1  GGTCTTAGTTTTTTTCATCTCCCTCAATTCTCAGGTAATCCATTTTCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAGTTTTTTTCATCTCCCTCAATTCTCAGGTAATCCATTTTCTCT  930

seq1  TGAGACAGACTCATTCCCAAGTATAGTCAGAACCCTGACTGATCCCCCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGACTCATTCCCAAGTATAGTCAGAACCCTGACTGATCCCCCAC  980

seq1  TGACTTGTTTGCATGAGCTACACTTCAAACTAGAAACTCCATCGTACGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTTTGCATGAGCTACACTTCAAACTAGAAACTCCATCGTACGGA  1030

seq1  GGAAGACTGACCCTCCCTCCAGCAGCCCATAGGCCTCATGGCTGCCCGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTGACCCTCCCTCCAGCAGCCCATAGGCCTCATGGCTGCCCGAA  1080

seq1  GAAGGCAGAGAGGAGACAGCCAGGAGATCTCTGTCCTGGTTAGAACTCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGAGGAGACAGCCAGGAGATCTCTGTCCTGGTTAGAACTCAG  1130

seq1  CAGCTGAATTC  1158
      |||||||||||
seq2  CAGCTGAATTC  1141