BAC Information

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BAC

Clone NameB6Ng01-288H08
Chromosome11 (Build37)7 (Build37)
Map Location 68,235,178 - 68,235,21720,513,404 - 20,513,899
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288H08.bB6Ng01-288H08.g
ACCGA086116GA086117
length91490
definitionB6Ng01-288H08.b B6Ng01-288H08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,235,178 - 68,235,217)(20,513,404 - 20,513,899)
sequence
gaattcagtctgtaggccaggctgtccttgaactccgagatccacctgtg
ctgggactaaaggtatgcaccaccatttggcctgcctcctc
ctccccacccagagctggaatcacttgacctcacctccaagctccaaatt
tagaagttgtttttgattttgatttttttttaaagtgagatcacaggatt
gtttcctgtgttaggaaggaagactctcgagaaataacactgagtcataa
tggccaaagaaaatgaggccaggcatggtggcacacgcctttaatcccag
cactctggaggcagaggcaggtggatttctgagtttgaggccagcctggc
ctacaaagtaccaggacaaccagggctacacagagaaatcctgtctcaaa
aacaaaaacaaaaaaaaagaaaaagaaaatgttcccagtgtaggcggccg
gtagactgttacccaggttcaagatctggtttgtgagttgaggaccttac
agtttcagcctgggagagtaaatgtgagagcctttgggtggaaagatgac
tcagggcaagcagaaggtgctcctggggatcaaactgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68235178_68235217
seq2: B6Ng01-288H08.b_49_88 (reverse)

seq1  CAGGTGAATCTCTGAGTTCTAGGACAGCCTGGCCTTCAGA  40
      |||||| ||||| |||||| ||||||||||||||| ||||
seq2  CAGGTGGATCTCGGAGTTCAAGGACAGCCTGGCCTACAGA  40

seq1: chr7_20513404_20513899
seq2: B6Ng01-288H08.g_68_563 (reverse)

seq1  AAGCAGTTTGATCCCCAGGAGCACCTTCTGCTTGCCCTGAGTCATCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGATCCCCAGGAGCACCTTCTGCTTGCCCTGAGTCATCTTTC  50

seq1  CACCCAAAGGCTCTCACATTTACTCTCCCAGGCTGAAACTGTAAGGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGGCTCTCACATTTACTCTCCCAGGCTGAAACTGTAAGGTCCT  100

seq1  CAACTCACAAACCAGATCTTGAACCTGGGTAACAGTCTACCGGCCGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACAAACCAGATCTTGAACCTGGGTAACAGTCTACCGGCCGCCTA  150

seq1  CACTGGGAACATTTTCTTTTTCTTTTTTTTTGTTTTTGTTTTTGAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAACATTTTCTTTTTCTTTTTTTTTGTTTTTGTTTTTGAGACAG  200

seq1  GATTTCTCTGTGTAGCCCTGGTTGTCCTGGTACTTTGTAGGCCAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTGTGTAGCCCTGGTTGTCCTGGTACTTTGTAGGCCAGGCTGG  250

seq1  CCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCAGAGTGCTGGGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCAGAGTGCTGGGATTAA  300

seq1  AGGCGTGTGCCACCATGCCTGGCCTCATTTTCTTTGGCCATTATGACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGTGCCACCATGCCTGGCCTCATTTTCTTTGGCCATTATGACTCA  350

seq1  GTGTTATTTCTCGAGAGTCTTCCTTCCTAACACAGGAAACAATCCTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTTCTCGAGAGTCTTCCTTCCTAACACAGGAAACAATCCTGTGA  400

seq1  TCTCACTTTAAAAAAAAATCAAAATCAAAAACAACTTCTAAATTTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTAAAAAAAAATCAAAATCAAAAACAACTTCTAAATTTGGAGC  450

seq1  TTGGAGGTGAGGTCAAGTGATTCCAGCTCTGGGTGGGGAGGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTGAGGTCAAGTGATTCCAGCTCTGGGTGGGGAGGAATTC  496