BAC Information

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BAC

Clone NameB6Ng01-288M16
Chromosome7 (Build37)
Map Location 24,982,426 - 24,983,389
singlet/doubletsinglet
Overlap geneZfp111
Upstream geneLOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114
Downstream geneZfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M16.bB6Ng01-288M16.g
ACCGA086364GA086365
length1,1531,210
definitionB6Ng01-288M16.b B6Ng01-288M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagcttgaattccgggcttattgctcaccggagagtccacacggg
agagaaaccctatgagtgcaaggactgtgggaaaggcttcagtcttgcct
caagtctacggactcatcagagagttcacactggtgagaagcccttccaa
tgcaatgagtgccagaagcggttcagtcaggtctcacacctccagtccca
ccagagagtgcacactggggagaagccctacaaatgtgaccggtgtggga
aagctttcagccagaagtctgggctccaagtccataagagaattcacact
ggggagaagccgttcaagtgtgaggagtgtgggaaggaattcatctggag
ctcagggcttagtgctcaccggaaggttcatacaggagagaaaccctaca
gacgtcggcagtatgggaagggcctcatcaggcctcacacttccgattaa
cagtctgtttcaatgtaaacatagcaggagcattatatcaatcctgtaag
aaaataataggaaacaaaatataagttagctattatacaatgagaaaaac
cattatgacacatggcgaattacatagtcagatagcattctgataggaaa
tgatatatgtagatttatatttaacaattttatataccctggatatagga
ttagaagtccaatcagatgcaattagggaccatgtctccagtatcttcct
ttgattcggtctctggcatgggtggagcgtctccagatgatgatggctga
agtggtcatgaaggaagtggcaggtatcgaagtctctgtctatggagaag
acgtggcacaatcaagtggtctggcatctataggggtcctataaatatat
aaacagaacttcttctgaaaaaaaacatctagtctttttttattgtccaa
tttagtaaggtttttattaagaggcttgagattttcaaagggcggactta
ttttttggttctatgataacaagttattgtgtggcatgaattagtttaaa
ctgctctattgctttccaacaagttgcacatgcacacctgccccaagagc
ttcttctggattcataaattgaaagatggcatgcacaatacttagtttaa
ttttgattatggccttagactggctttaaggctgggcactttctaaattc
ctt
gaattccaggaagtctttaatttctttatttcttccctgaccaagtcatc
attgagtaggtatttgctcagttgccatgggtatgttgattttatgctgt
ttttgttgttattgaagaacagccttattctgtggtgatctgataggatg
catgggattatgtcaatcttcttataatagtttaggcttgttttgtgact
gattatatggtcaattttggagaaggtactatgaggtgctgagaagaagg
gatattcttttgctttagggtggaagttctgtagatatgtgttaaattca
tttggttcgtaatctctattagtttcactgtgtctatgtttagtttctgt
ttcaatgacctgtccattagtgaaagtgagatgttgaagtctcccactat
tattgtgtggggttcaatgtgtgttttgagctttagtaaagtttcttcta
tgaatgtatatgcccttgcatttgaggcatagatgttcagaattgaaact
ttctcttggtggatttttcctttgaatatgaagtgtcctttctcatctca
cttggtaacttttgttgaaagtttatgatcatcttcacaatagtcacgag
gaatataaaatatctgggtgtgatgctaaccaagcaagtgaaagatctgt
cagtcaagaacttcaattctctgatggaggaaattgaggaagattcagaa
gatggaaagatctcccaggctcatgaaattagaaggattaacagtataaa
ctgagcatctaaccaaaagcaatctacaaatttcaatgcaatccccatta
aaattccaaataagttcaataaaaaagaacaattctcaaattcatttggg
aataacaaaaaagccaaaaaagcagaaactattctccaacaataatagaa
cttctagggaaaatcaccatccctgacctcaagctatatgacagagcaaa
atatatatatatatatatatatataataaaaagcatggtattggatatag
agacaggacaggtaggatcaatgggaatagaattggaccatacccagatg
aaccctacacacccttatggtcaactgatttttacaaagagccctagaac
caatccagtggggaaaggggacttgccatatccaaccaaccagtggcttg
gcctcaaggtggccagttcaggccacatggaaagaaagtgcatatgttgg
acgcccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24982426_24983389
seq2: B6Ng01-288M16.b_210_1201 (reverse)

seq1  AAGGA--TTAG-AAGTGCCCAGCCTTTAAGCCAG-CCAAGG-CAT-ATCA  44
      |||||  |||| |||||||||||||| ||||||| | |||| ||| ||||
seq2  AAGGAATTTAGAAAGTGCCCAGCCTTAAAGCCAGTCTAAGGCCATAATCA  50

seq1  AAATT-AACT-AGTA-TGTGCATG-CATCTTTC-ATTTATGAATCCAGA-  88
      ||||| |||| |||| |||||||| |||||||| ||||||||||||||| 
seq2  AAATTAAACTAAGTATTGTGCATGCCATCTTTCAATTTATGAATCCAGAA  100

seq1  -GAGCTCTT-GGGCAGGTGTGCATGTGCAACCTGTTGG-AAGC-ATAGAG  134
        ||||||| ||||||||||||||||||||| |||||| |||| ||||||
seq2  GAAGCTCTTGGGGCAGGTGTGCATGTGCAACTTGTTGGAAAGCAATAGAG  150

seq1  CAGTTT-AACTAATTCATGCCACAC-ATA--CTGTTATCATAGAA-CAAA  179
      |||||| |||||||||||||||||| |||   ||||||||||||| ||||
seq2  CAGTTTAAACTAATTCATGCCACACAATAACTTGTTATCATAGAACCAAA  200

seq1  AAATAAGT-CGCCCTTTGAAAATCTCAAGCCTC-TAATAAAAACC-TACT  226
      |||||||| |||||||||||||||||||||||| ||||||||||| ||||
seq2  AAATAAGTCCGCCCTTTGAAAATCTCAAGCCTCTTAATAAAAACCTTACT  250

seq1  -AATTGGACAAT-AAAAAAGACTAGATG-TTTTTTTCAGAAGAAGTTCTG  273
       ||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AAATTGGACAATAAAAAAAGACTAGATGTTTTTTTTCAGAAGAAGTTCTG  300

seq1  TTTATATATTTATAGGA-CCCTATAGATGCCAGACCACTTGATTGTGCCA  322
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTATATATTTATAGGACCCCTATAGATGCCAGACCACTTGATTGTGCCA  350

seq1  CGTCTTCTCCATAGACAGAGACTTCGATACCTGCCACTTCCTTCATGACC  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCTCCATAGACAGAGACTTCGATACCTGCCACTTCCTTCATGACC  400

seq1  ACTTCAGCCATCATCATCTGGAGACGCTCCACCCATGCCAGAGACCGAAT  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCATCATCATCTGGAGACGCTCCACCCATGCCAGAGACCGAAT  450

seq1  CAAAGGAAGATACTGGAGACATGGTCCCTAATTGCATCTGATTGGACTTC  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAGATACTGGAGACATGGTCCCTAATTGCATCTGATTGGACTTC  500

seq1  TAATCCTATATCCAGGGTATATAAAATTGTTAAATATAAATCTACATATA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTATATCCAGGGTATATAAAATTGTTAAATATAAATCTACATATA  550

seq1  TCATTTCCTATCAGAATGCTATCTGACTATGTAATTCGCCATGTGTCATA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTATCAGAATGCTATCTGACTATGTAATTCGCCATGTGTCATA  600

seq1  ATGGTTTTTCTCATTGTATAATAGCTAACTTATATTTTGTTTCCTATTAT  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTTCTCATTGTATAATAGCTAACTTATATTTTGTTTCCTATTAT  650

seq1  TTTCTTACAGGATTGATATAATGCTCCTGCTATGTTTACATTGAAACAGA  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACAGGATTGATATAATGCTCCTGCTATGTTTACATTGAAACAGA  700

seq1  CTGTTAATCGGAAGTGTGAGGCCTGATGAGGCCCTTCCCATACTGCCGAC  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATCGGAAGTGTGAGGCCTGATGAGGCCCTTCCCATACTGCCGAC  750

seq1  GTCTGTAGGGTTTCTCTCCTGTATGAACCTTCCGGTGAGCACTAAGCCCT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGGGTTTCTCTCCTGTATGAACCTTCCGGTGAGCACTAAGCCCT  800

seq1  GAGCTCCAGATGAATTCCTTCCCACACTCCTCACACTTGAACGGCTTCTC  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGATGAATTCCTTCCCACACTCCTCACACTTGAACGGCTTCTC  850

seq1  CCCAGTGTGAATTCTCTTATGGACTTGGAGCCCAGACTTCTGGCTGAAAG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGAATTCTCTTATGGACTTGGAGCCCAGACTTCTGGCTGAAAG  900

seq1  CTTTCCCACACCGGTCACATTTGTAGGGCTTCTCCCCAGTGTGCACTCTC  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCACACCGGTCACATTTGTAGGGCTTCTCCCCAGTGTGCACTCTC  950

seq1  TGGTGGGACTGGAGGTGTGAGACCTGACTGAACCGCTTCTGG  964
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACTGGAGGTGTGAGACCTGACTGAACCGCTTCTGG  992