BAC Information

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BAC

Clone NameB6Ng01-288P20
Chromosome7 (Build37)
Map Location 3,233,007 - 3,234,114
singlet/doubletsinglet
Overlap geneNlrp12
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503
Downstream geneGA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288P20.bB6Ng01-288P20.g
ACCGA086510GA086511
length1,1161,184
definitionB6Ng01-288P20.b B6Ng01-288P20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagaacagccaccaagtaatgactcgcttctgtctacaccccca
ccacccacccccgccaaggctgaagaggtgtcagatctccggatcagcct
gccaggacctcgcagccgctgtcatcgccaacaggaatttaatcaggctg
gacctcagtgacaacagcattggggtgccaggcctggagctgctctgtga
ggggctgcagcaccccaggtgtaggctgcagatgatccagtgagtgagtc
tgcactgggcatgtgtgttctacttttgctcctcctgctcctcccgtctc
ctcctgtttgtcctccttctgcttccccccttctttaaagcctattagca
tatattagttgtacatattactaagattcagtgtagtcccccacttctac
ccctgatctttctcagtttattaagactaggtctcaagcagcccaggctg
gccttgaactcctcattctgttatctgtctaactgcagggagttccacca
cacctagccttcagggtggtttttccctatgtatatcacatgcacagatc
aaacccagcccaccttcccttactatccccaaaatgttcatttaaaaata
gattttgtttggttggttttagttttgtcttcagttttggacttttgaga
caggatctcactgtgtagctcttcctgatttgaacttgctgtgtagacca
ggctgactctgaactttaagagttctgtctcaataaacaaaaccaaccaa
ccaaccaaccaaaccaacccaagtacaaagggaagagaaaaaattacata
ggttcatgttggggtgactacacagaacatgacagcctctttcaccttct
cccttctagctgaggaagtgtctgttggaggctgcagctggccgatccct
ggcttctgttctcagcaacaactcatatcttggtagaactggatctgaca
ggaaccccttggaagattcggggctgaagttactgtgtcaagggcttagc
accctgtctggcaggctgcgtacccttgtggtgagattcttcctggggcc
actcagagcgcaggtcttcctgtggtgaattcaaagttagcaattgaatt
caggtgttacatttca
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaaacttgtacaacctctctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacaagctccactat
gttcatagcagccttgtttataatagccagaagctggaaaaaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaatgaatttatgaaattcctaggcaaat
ggatggacctggagagtatcatcctgagtgaggtaatccaatcacaaagg
aactcgcacaatatgtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaacttgccaaacgcatgaaattcaaga
agaacgaagaccaaagtgtggacactttgccctttcttagaaatgggaac
aaaacacccatggaaggagttacagagacaaaatttggagctgtgacgaa
agaatggaccatctagtgattgccatatgcaggaatccatcccataatca
gtttccaaatgctgacaccattgcttacactagcaagatttttgctgaaa
ggacccagatatagctctctcttctgagactatgccagggccctagcaaa
cacaggaagtggatgatcacagtcagctattggatgggtcacacggcccc
caaatggagggagctagaagaaatttacccaaggagctaatggggaactg
caccctataggtggaaacacaatatggactaccagtacccggagcttctt
gtctctagcttgcatatgtatcaaaagatgggcctagtccggcaatcact
gcaaaggagaggtccaatggaactgcaactttatatggccaagttcaagg
ctaactctccgaggacccaaaaaggtggggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3233007_3234114
seq2: B6Ng01-288P20.b_49_1164 (reverse)

seq1  TGAAATGTAACACCTG-ATTCATTTGCT-ACTTTGATTTCA-CACA-GAA  46
      |||||||||||||||| ||||| ||||| ||||||| |||| |||| |||
seq2  TGAAATGTAACACCTGAATTCAATTGCTAACTTTGAATTCACCACAGGAA  50

seq1  GACCTGCGCTCTGAGTTGGCCCCAGGA--GATCTCACCAC-AGGGTACGC  93
      ||||||||||||||| |||||||||||   |||||||||| |||||||||
seq2  GACCTGCGCTCTGAG-TGGCCCCAGGAAGAATCTCACCACAAGGGTACGC  99

seq1  AGCCTG-CAGACAGGGTGCCTTAGCCCTTGACACAGTAACTTCAGCCCCG  142
      |||||| ||||||||||| || ||||||||||||||||||||||||||||
seq2  AGCCTGCCAGACAGGGTG-CTAAGCCCTTGACACAGTAACTTCAGCCCCG  148

seq1  AATCTTCCAAGGGGTTTCCTGTCAGATCCAGTTCTACC-AGATATGAGTT  191
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  AATCTTCCAAGGGG-TTCCTGTCAGATCCAGTTCTACCAAGATATGAGTT  197

seq1  GTTGCTGAGAACAGAAGCCAGGGATCGGCCAGCTGCAGCCTCCAACAGAC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGAGAACAGAAGCCAGGGATCGGCCAGCTGCAGCCTCCAACAGAC  247

seq1  ACTTCCTCAGCCTAGAAGGGAGAAGGTG-AAGAGGCTGTCATGTTCTGTG  290
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  ACTTCCTCAG-CTAGAAGGGAGAAGGTGAAAGAGGCTGTCATGTTCTGTG  296

seq1  TAGTCA-CCCAACATGAACCTATGTAATTTTTTCTCTTCCCTTTGTACTT  339
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCCCAACATGAACCTATGTAATTTTTTCTCTTCCCTTTGTACTT  346

seq1  GGGTTGGTTTGGTTGGTTGGTTGGTTGGTTTTGTTTATTGAGACAGAACT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTTTGGTTGGTTGGTTGGTTGGTTTTGTTTATTGAGACAGAACT  396

seq1  CTT-AAGTTCAGAGTCAGCCTGGTCTACACAGCAAGTTCAAATCAGGAAG  438
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTCAGAGTCAGCCTGGTCTACACAGCAAGTTCAAATCAGGAAG  446

seq1  AGCTACACAGTGAGATCCTGTCTCAAAAGTCCAAAACTGAAGACAAAACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACAGTGAGATCCTGTCTCAAAAGTCCAAAACTGAAGACAAAACT  496

seq1  AAAACCAACCAAACAAAATCTATTTTTAAATGAACATTTTGGGGATAGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAACCAAACAAAATCTATTTTTAAATGAACATTTTGGGGATAGTA  546

seq1  AGGAAAGGTGGGCTGGGTTTGATCTGTGCATGTGATATACATAGGGAAAA  588
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTGGGCTGGGTTTGATCTGTGCATGTGATATACATAGGGAAAA  596

seq1  ACCACCCTGAAGGCTAGGTGTGGTGGAACTCCCTGCAGTTAGACAGATAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGAAGGCTAGGTGTGGTGGAACTCCCTGCAGTTAGACAGATAA  646

seq1  CAGAATGAGGAGTTCAAGGCCAGCCTGGGCTGCTTGAGACCTAGTCTTAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGGAGTTCAAGGCCAGCCTGGGCTGCTTGAGACCTAGTCTTAA  696

seq1  TAAACTGAGAAAGATCAGGGGTAGAAGTGGGGGACTACACTGAATCTTAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGAGAAAGATCAGGGGTAGAAGTGGGGGACTACACTGAATCTTAG  746

seq1  TAATATGTACAACTAATATATGCTAATAGGCTTTAAAGAAGGGGGGAAGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTACAACTAATATATGCTAATAGGCTTTAAAGAAGGGGGGAAGC  796

seq1  AGAAGGAGGACAAACAGGAGGAGACGGGAGGAGCAGGAGGAGCAAAAGTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGACAAACAGGAGGAGACGGGAGGAGCAGGAGGAGCAAAAGTA  846

seq1  GAACACACATGCCCAGTGCAGACTCACTCACTGGATCATCTGCAGCCTAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACATGCCCAGTGCAGACTCACTCACTGGATCATCTGCAGCCTAC  896

seq1  ACCTGGGGTGCTGCAGCCCCTCACAGAGCAGCTCCAGGCCTGGCACCCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGTGCTGCAGCCCCTCACAGAGCAGCTCCAGGCCTGGCACCCCA  946

seq1  ATGCTGTTGTCACTGAGGTCCAGCCTGATTAAATTCCTGTTGGCGATGAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTGTCACTGAGGTCCAGCCTGATTAAATTCCTGTTGGCGATGAC  996

seq1  AGCGGCTGCGAGGTCCTGGCAGGCTGATCCGGAGATCTGACACCTCTTCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTGCGAGGTCCTGGCAGGCTGATCCGGAGATCTGACACCTCTTCA  1046

seq1  GCCTTGGCGGGGGTGGGTGGTGGGGGTGTAGACAGAAGCGAGTCATTACT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCGGGGGTGGGTGGTGGGGGTGTAGACAGAAGCGAGTCATTACT  1096

seq1  TGGTGGCTGTTCTGGAATTC  1108
      ||||||||||||||||||||
seq2  TGGTGGCTGTTCTGGAATTC  1116