BAC Information

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BAC

Clone NameB6Ng01-289E19
Chromosome7 (Build37)
Map Location 62,670,831 - 62,807,615
singlet/doubletdoublet
Overlap geneLOC668796
Upstream geneLOC622146, Luzp2
Downstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289E19.bB6Ng01-289E19.g
ACCGA086741GA086742
length1,1071,015
definitionB6Ng01-289E19.b B6Ng01-289E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,670,831 - 62,671,934)(62,806,614 - 62,807,615)
sequence
gaattctgatacatttttcaaaacggtacattctcaagttaaagcagaga
ttcatgtttttcttaatgtatgaggtatcttcttattcacgatcttttat
cttttattctctgctgtatggtggacattatgctgtatggtaggcattat
gctcattctggttctatatttgaccttgtaatgtagaaaagagtcattac
ttaaactttcagtagagatcaaatttggcttctttagtatcacagaaata
aaaacatcttagcccctcaagaggcacttatcttacaaccaatagtatgc
atgtatgcagcaaaatgcaataataacttttctgaaagaatatcaccact
ggaatttatttttcatgctgccaattctctgtcagcctatttcttaagga
aaattaagtaaatattgagagggataaacacaattcatgaactgaattat
agctgattgctctctaagaaatacacttacacatttttattttctgaaaa
atgcttttaacatgtatactgattacaaagaggctctctaattttgctta
taggattagagacattttgacccttcttgagggcccatcttttttttttt
gatattttctaatttacatctcaaatgctatcccaaaagttccctatacc
ctcccccaccctgctcctgtacccacccaatctcatttcttggtcctggc
attttcctgtactggggcatataaagtttgcaagacctaggggcctcgct
tcccaatgatggccgactaggccatcatccttagtgaggtaacccaatca
aaaaagaagtcacttgatatgcactcacttgataagtgaatattagccca
gaaacttataatacccaagatacaatttgcaaaacacaagaaaattaaga
agaaggaagaccaacgtgtagatacttcattccttctttagaatagggaa
caaaataccatggaagtgtacaggagacaaagtttgaagggtcattctta
aacaaaccttatatgctgaattttcttattggtgctatagtaataaaatt
tggtgaaaattttaaaaacatgaaaaagtatttaggaaacagtttaaata
gtccaaa
gaattcaattttaaaaagcacttataataggaaaatactgaaagagagca
cgtggatccatacactagactaacgcggtaatggaacgcgggaatgaaaa
attaatgtatgggtagagaatgctagattccaggaggagagcttccttga
aactcttttgcctcatgagtgacttttaagcctttcggcttgtccagctg
actcgaccgaagagcgtagcagaaacccactactcagttgactttgtggc
ttttctatttgtactcagtccaagtccacagtccctggaatggcactgtc
cgtatttagggtgagccttccttttttggttctctttagaaattaatgac
ctcactaacataaccagaggttgtctcctgggggaattttaaatccatta
ctctgacaatgggcttaactagcattgatggttgtgcaccagaaatctca
aagtataagtgtcaatcaatcaacaatgggattaattcctcatcacgtca
taagtaacacagtaatagaaagagttctgaaagaacctagtggggaaacc
cccactcaatttccgtttggcgtgcactcaagaatcacgaacagatgacc
atcttgatgtaaaagcatgaggtagtttaatgacggagctccgggccgac
acgtatctcccacaggagacagaggtgttgaccacatggtggagccataa
tggcggagctccggttcgaaacatatctcacacaggagacagtggttttc
gaccccatgcttggaagctaggggtttttatagaaaaggggtggggctgg
gggaggaattggcgccggtttcacatgattggtccattttaacattcaac
agactgtccaaaagggcgggagataaggaaggcactaaggccagtctgga
catgtaattgacgggcctgctccgggcatggtcctggtcctggtctgcta
tgttcttcagccccagttttcaaagctcacaaaacaatctcttagggata
ttggacataaattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62670831_62671934
seq2: B6Ng01-289E19.b_44_1150

seq1  GAATTCTGATACATTTTTCAAAACGGTACATTCTCAAGTTAAAGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACATTTTTCAAAACGGTACATTCTCAAGTTAAAGCAGAGA  50

seq1  TTCATGTTTTTCTTAATGTATGAGGTATCTTCTTATTCACGATCTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTTTCTTAATGTATGAGGTATCTTCTTATTCACGATCTTTTAT  100

seq1  CTTTTATTCTCTGCTGTATGGTGGACATTATGCTGTATGGTAGGCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTCTCTGCTGTATGGTGGACATTATGCTGTATGGTAGGCATTAT  150

seq1  GCTCATTCTGGTTCTATATTTGACCTTGTAATGTAGAAAAGAGTCATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCTGGTTCTATATTTGACCTTGTAATGTAGAAAAGAGTCATTAC  200

seq1  TTAAACTTTCAGTAGAGATCAAATTTGGCTTCTTTAGTATCACAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTCAGTAGAGATCAAATTTGGCTTCTTTAGTATCACAGAAATA  250

seq1  AAAACATCTTAGCCCCTCAAGAGGCACTTATCTTACAACCAATAGTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCTTAGCCCCTCAAGAGGCACTTATCTTACAACCAATAGTATGC  300

seq1  ATGTATGCAGCAAAATGCAATAATAACTTTTCTGAAAGAATATCACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCAGCAAAATGCAATAATAACTTTTCTGAAAGAATATCACCACT  350

seq1  GGAATTTATTTTTCATGCTGCCAATTCTCTGTCAGCCTATTTCTTAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATTTTTCATGCTGCCAATTCTCTGTCAGCCTATTTCTTAAGGA  400

seq1  AAATTAAGTAAATATTGAGAGGGATAAACACAATTCATGAACTGAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTAAATATTGAGAGGGATAAACACAATTCATGAACTGAATTAT  450

seq1  AGCTGATTGCTCTCTAAGAAATACACTTACACATTTTTATTTTCTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATTGCTCTCTAAGAAATACACTTACACATTTTTATTTTCTGAAAA  500

seq1  ATGCTTTTAACATGTATACTGATTACAAAGAGGCTCTCTAATTTTGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAACATGTATACTGATTACAAAGAGGCTCTCTAATTTTGCTTA  550

seq1  TAGGATTAGAGACATTTTGACCCTTCTTGAGGGCCCATCTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAGAGACATTTTGACCCTTCTTGAGGGCCCATCTTTTTTTTTTT  600

seq1  GATATTTTCTAATTTACATCTCAAATGCTATCCCAAAAGTTCCCTATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTAATTTACATCTCAAATGCTATCCCAAAAGTTCCCTATACC  650

seq1  CTCCCCCACCCTGCTCCTGTACCCACCCAATCTCATTTCTTGGTCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACCCTGCTCCTGTACCCACCCAATCTCATTTCTTGGTCCTGGC  700

seq1  ATTTTCCTGTACTGGGGCATATAAAGTTTGCAAGACCTAGGGGCCTCGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGTACTGGGGCATATAAAGTTTGCAAGACCTAGGGGCCTCGCT  750

seq1  TCCCAATGATGGCCGACTAGGCCATCATCCTTAGTGAGGTAACCCAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGATGGCCGACTAGGCCATCATCCTTAGTGAGGTAACCCAATCA  800

seq1  AAAAAGAAGTCACTTGATATGCACTCAC-TGATAAGTGAATATTAGCCCA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAAAGAAGTCACTTGATATGCACTCACTTGATAAGTGAATATTAGCCCA  850

seq1  GAAACTTATAATACCCAAGATACAATTTGCAAAACACAAGAAAATTAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTATAATACCCAAGATACAATTTGCAAAACACAAGAAAATTAAGA  900

seq1  AGAAGGAAGACCAACGTGTAGATACTTCATTCC-TCCTTAGAATAGGGAA  948
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  AGAAGGAAGACCAACGTGTAGATACTTCATTCCTTCTTTAGAATAGGGAA  950

seq1  CAAAATACCCATGGAAGGTGTTACA-GAGACAAAGTTTG-AGGGTCCATC  996
      ||||||| |||||||| ||| |||| ||||||||||||| ||||||  ||
seq2  CAAAATA-CCATGGAA-GTG-TACAGGAGACAAAGTTTGAAGGGTCATTC  997

seq1  TTAAACAAACATAATATGCTG-ATTTTCTTATT-GTGCTATATGTATAAA  1044
      |||||||||| | |||||||| ||||||||||| ||||||||   |||||
seq2  TTAAACAAACCTTATATGCTGAATTTTCTTATTGGTGCTATAGTAATAAA  1047

seq1  ATTTTGTGAAAATTTTAAAAACATGAAAAAGTATTTAGAAACAAGTTAAA  1094
      |||| ||||||||||||||||||||||||||||||||| ||  |||| ||
seq2  ATTTGGTGAAAATTTTAAAAACATGAAAAAGTATTTAGGAAACAGTTTAA  1097

seq1  ATAGTTCAAA  1104
      ||||| ||||
seq2  ATAGTCCAAA  1107

seq1: chr7_62806614_62807615
seq2: B6Ng01-289E19.g_69_1083 (reverse)

seq1  GTAATTTATGTCAAATATCCCAAAGAG-TTG-TTTGTGAGCTTTGAAACC  48
      |||||||||||| |||||||| ||||| ||| |||||||||||||||| |
seq2  GTAATTTATGTCCAATATCCCTAAGAGATTGTTTTGTGAGCTTTGAAAAC  50

seq1  TGGGGCTG-AGAACATAGCAGAACAGG-CCAGGA-CATGCCCGG-GCAGG  94
      |||||||| ||||||||||||| |||| |||||| ||||||||| |||||
seq2  TGGGGCTGAAGAACATAGCAGACCAGGACCAGGACCATGCCCGGAGCAGG  100

seq1  CCCGTC-ATTACATGTCCTGACTGGCC-TAGTGCCTTCC-TATCTCCCGC  141
      |||||| ||||||||||| |||||||| ||||||||||| ||||||||||
seq2  CCCGTCAATTACATGTCCAGACTGGCCTTAGTGCCTTCCTTATCTCCCGC  150

seq1  CCTTCT-GACAGTCTGTTG-ATGTTTAAATGGACCAATCATGTGAAACC-  188
      |||| | |||||||||||| ||||| ||||||||||||||||||||||| 
seq2  CCTTTTGGACAGTCTGTTGAATGTTAAAATGGACCAATCATGTGAAACCG  200

seq1  GCGCCAATTCCTCCCCCAGCCCCACCCCTTTTCTATAAAAACCCCTAGCT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAATTCCTCCCCCAGCCCCACCCCTTTTCTATAAAAACCCCTAGCT  250

seq1  TCCAAGCATGGGGTCG-AAACCACTGTCTCCTGTGTGAGATATGTTTCGA  287
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCAAGCATGGGGTCGAAAACCACTGTCTCCTGTGTGAGATATGTTTCGA  300

seq1  ACCGGAGCTCCGCCATTATGGCTCCACCATGTGGTCAACACCTCTGTCTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAGCTCCGCCATTATGGCTCCACCATGTGGTCAACACCTCTGTCTC  350

seq1  CTGTGGGAGATACGTGTCGGCCCGGAGCTCCGTCATTAAACTACCTCATG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAGATACGTGTCGGCCCGGAGCTCCGTCATTAAACTACCTCATG  400

seq1  CTTTTACATCAAGATGGTCATCTGTTCGTGATTCTTGAGTGCACGCCAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATCAAGATGGTCATCTGTTCGTGATTCTTGAGTGCACGCCAAA  450

seq1  CGGAAATTGAGTGGGGGTTTCCCCACTAGGTTCTTTCAGAACTCTTTCTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAATTGAGTGGGGGTTTCCCCACTAGGTTCTTTCAGAACTCTTTCTA  500

seq1  TTACTGTGTTACTTATGACGTGATGAGGAATTAATCCCATTGTTGATTGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTACTTATGACGTGATGAGGAATTAATCCCATTGTTGATTGA  550

seq1  TTGACACTTATACTTTGAGATTTCTGGTGCACAACCATCAATGCTAGTTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTTATACTTTGAGATTTCTGGTGCACAACCATCAATGCTAGTTA  600

seq1  AGCCCATTGTCAGAGTAATGGATTTAAAATTCCCCCAGGAGACAACCTCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTGTCAGAGTAATGGATTTAAAATTCCCCCAGGAGACAACCTCT  650

seq1  GGTTATGTTAGTGAGGTCATTAATTTCTAAAGAGAACCAAAAAAGGAAGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTTAGTGAGGTCATTAATTTCTAAAGAGAACCAAAAAAGGAAGG  700

seq1  CTCACCCTAAATACGGACAGTGCCATTCCAGGGACTGTGGACTTGGACTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTAAATACGGACAGTGCCATTCCAGGGACTGTGGACTTGGACTG  750

seq1  AGTACAAATAGAAAAGCCACAAAGTCAACTGAGTAGTGGGTTTCTGCTAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAATAGAAAAGCCACAAAGTCAACTGAGTAGTGGGTTTCTGCTAC  800

seq1  GCTCTTCGGTCGAGTCAGCTGGACAAGCCGAAAGGCTTAAAAGTCACTCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCGGTCGAGTCAGCTGGACAAGCCGAAAGGCTTAAAAGTCACTCA  850

seq1  TGAGGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAATCTAGCATTCTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAAAAGAGTTTCAAGGAAGCTCTCCTCCTGGAATCTAGCATTCTC  900

seq1  TACCCATACATTAATTTTTCATTCCCGCGTTCCATTACCGCGTTAGTCTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACATTAATTTTTCATTCCCGCGTTCCATTACCGCGTTAGTCTA  950

seq1  GTGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGATCCACGTGCTCTCTTTCAGTATTTTCCTATTATAAGTGCTT  1000

seq1  TTTAAAATTGAATTC  1002
      |||||||||||||||
seq2  TTTAAAATTGAATTC  1015