BAC Information

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BAC

Clone NameB6Ng01-289G08
Chromosome7 (Build37)
Map Location 35,132,640 - 35,320,597
singlet/doubletdoublet
Overlap geneLsm14a, LOC668460, LOC668464
Upstream geneAbpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734
Downstream geneKctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289G08.bB6Ng01-289G08.g
ACCGA086810GA086811
length1,0521,092
definitionB6Ng01-289G08.b B6Ng01-289G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,132,640 - 35,133,676)(35,319,532 - 35,320,597)
sequence
gaattcagaaattcttctgcctctgcctcccaacccgttgggattaaagg
tgtgtacaaccacaccctgtaccacatctaatttttacagatgtacatcc
cagttacaggaggtcagctacttcctagttgaaaaacttcctctgagggt
acaataccaaactgtgtgttctgttactttaaactgaaacacacatggca
acgtacaagctggtctagaaacaagtaccaaactaaagatagccctctgt
ccccaccaaaccaaccttcacacctcccaatttctttctttcttttcttt
ttttacctttcagaaagcagtatgaccaatccagaccttttagggtccaa
aagccgtggttttctgaaaggttaaaaaaaaagataggagaaagacaggg
agagaaagggggtaagggagggagaagaaaataaaaggggaaggaaagag
actgagtcatttcagattcttcccacacccgcccaaatttaaaaacagaa
acaaaaaaacctccatatatatcatttgtctctctgtgtatgcatgcctg
tggaagccagaggactgcctggcactggagttacaggcagatatgacatg
ggtgttggtaaccaaactgagtcacctccagtctccattccaaattcctt
cattgtctcaggatctctgactgaatataagactcaaatgtattacccac
cacagtcactgaaactacttaacagtagcatatgagaaagaagttgacta
cactcatatccccaatccagacatccccttttcttactgacactcacacc
agtcagtgctcatacactaaaccagctgatccttagtaaggctgcccaga
gcagcaacttccactccgggggttttagcaggacataatgcttttagaaa
agagttcagtgctccaggacaaaagctttctcgtttcacaatgagaatca
ctgtaaatgtcctaaaggagtttaggtgtgatggctaatccctgattggt
ctgtttgacagatctgaggctggggggtgagaaatgaattacgggcttgg
gg
gaattctacagccgtgagccaaagtaaatcctttctcttttaaattgttt
tgctcaggcattgcatggtgatggagagctaacgcgccttctcggcctag
gcagccctcggcagcagcagctaactctagggagcaactgagcagttctt
tgctgtgaattctcatctggcctctctagagagaagtaagagcgccaggg
ctagaggtgcgtgggcccttcatcgggcaggcttgcctctgctcccatta
ctcactccataacacacagggtttgaaatacaaggggcagagatctaaag
agctgccaaggaggatactggtccaaggaagccacttggcaagccactct
gctggcccagactccaccctccaataggaactactaggctgaactttccc
aggagttattctctacacacacgtagctcaagatgaaccacaactgcttg
cagcaagcgttaagtgagaggtgggactttcaagaggtgcctgggttcca
agggctctgttgttgggagtgggttgatacatgtgggagtgagttaatcg
tgagaatcttccccctgctcagaccctctctctgacctatgctcacttgc
cttccatcccgctatgacgtagcaagggatcccttggcagatgtcaaaac
tcatgcttactcctttctttaaattacctagtgcctggtattctgcaata
gccacagaagaaagaccaagagacttgtttttgtgaagtattggatgcca
aagagctcagctcagagggtagccaagtaattagacacaaagactctgtc
tctttcatctctgtgtgtctgagctttgacagaaaaagctgctcaccgaa
tcgtgtttctttcataatttttattcccttatgcctttgggaccagtctt
gcacccccttttcacagtctccgtattctggagtctacagaaattagaca
aaactctggttaagcatcatctgagttattttttggaattaatggctaat
taaatgtggaggcctagaaaagaaaggcatgaaggaattccgtagcacct
tggaacctggaagcgatgggcccccccgggttcaagagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_35132640_35133676
seq2: B6Ng01-289G08.b_47_1098

seq1  GAATTCAGAAATTCTTCTGCCTCTGCCTCCCAA-CTGTTGGGATTAAAGG  49
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  GAATTCAGAAATTCTTCTGCCTCTGCCTCCCAACCCGTTGGGATTAAAGG  50

seq1  TGTGTACAACCACACCCTGTACCACATCTAATTTTTACAGATGTACATCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAACCACACCCTGTACCACATCTAATTTTTACAGATGTACATCC  100

seq1  CAGTTACAGGAGGTCAGCTACTTCCTAGTTGAAAAACTTCCTCTGAGGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACAGGAGGTCAGCTACTTCCTAGTTGAAAAACTTCCTCTGAGGGT  150

seq1  ACAATACCAAACTGTGTGTTCTGTTACTTTAAACTGAAACACACATGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCAAACTGTGTGTTCTGTTACTTTAAACTGAAACACACATGGCA  200

seq1  ACGTACAAGCTGGTCTAGAAACAAGTACCAAACTAAAGATAGCCCTCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACAAGCTGGTCTAGAAACAAGTACCAAACTAAAGATAGCCCTCTGT  250

seq1  CCCCACCAAACCAACCTTCACACCTCCCAATTTCTTTCTTTCTTTTCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCAAACCAACCTTCACACCTCCCAATTTCTTTCTTTCTTTTCTTT  300

seq1  TTTTACCTTTCAGAAAGCAGTATGACCAATCCAGACCTTTTAGGGTCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTTCAGAAAGCAGTATGACCAATCCAGACCTTTTAGGGTCCAA  350

seq1  AAGCCGTGGTTTTCTGAAAGGTTAAAAAAAAAGATAGGAGAAAGACAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTGGTTTTCTGAAAGGTTAAAAAAAAAGATAGGAGAAAGACAGGG  400

seq1  AGAGAAAGGGGGTAAGGGAGGGAGAAGAAAATAAAAGGGGAAGGAAAGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGGGGTAAGGGAGGGAGAAGAAAATAAAAGGGGAAGGAAAGAG  450

seq1  ACTGAGTCATTTCAGATTCTTCCCACACCCGCCCAAATTTAAAAACAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCATTTCAGATTCTTCCCACACCCGCCCAAATTTAAAAACAGAA  500

seq1  ACAAAAAAACCTCCATATATATCATTTGTCTCTCTGTGTATGCATGCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACCTCCATATATATCATTTGTCTCTCTGTGTATGCATGCCTG  550

seq1  TGGAAGCCAGAGGACTGCCTGGCACTGGAGTTACAGGCAGATATGACATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGAGGACTGCCTGGCACTGGAGTTACAGGCAGATATGACATG  600

seq1  GGTGTTGGTAACCAAACTGAGTCACCTCCAGTCTCCATTCCAAATTCC-T  648
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGTTGGTAACCAAACTGAGTCACCTCCAGTCTCCATTCCAAATTCCTT  650

seq1  CATTGTCTCAGGATCTCTGACTGAATATAAGACTCAAATGTATTACCCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTCAGGATCTCTGACTGAATATAAGACTCAAATGTATTACCCAC  700

seq1  CACAGTCACTGAAACTACTTAACAGTAGCATATGAGAAAGAAGTTGACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACTGAAACTACTTAACAGTAGCATATGAGAAAGAAGTTGACTA  750

seq1  CACTCATAT-CCCAATCCAGACATCCCC-TTTCTTACTGACACTCACACC  796
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  CACTCATATCCCCAATCCAGACATCCCCTTTTCTTACTGACACTCACACC  800

seq1  AGTCAGTGCTCATACACTAAACCAGCTGAT-CTTAGTAAGGCTGCCCAGA  845
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCAGTGCTCATACACTAAACCAGCTGATCCTTAGTAAGGCTGCCCAGA  850

seq1  GCAGCAACTTCCACTCCGGGGG-TTTAGCAGGACATAATGC-TTTAGAAA  893
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GCAGCAACTTCCACTCCGGGGGTTTTAGCAGGACATAATGCTTTTAGAAA  900

seq1  AGAGTTCAGTGCTCCAGGAC-AAAGC-TTCTCGTTTCACAATGAGAATCA  941
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  AGAGTTCAGTGCTCCAGGACAAAAGCTTTCTCGTTTCACAATGAGAATCA  950

seq1  CTGTAAATGT-CTAAGGGAGTTTAGGTGTGATGGCTAAT-CCTGATT-GT  988
      |||||||||| |||| ||||||||||||||||||||||| ||||||| ||
seq2  CTGTAAATGTCCTAAAGGAGTTTAGGTGTGATGGCTAATCCCTGATTGGT  1000

seq1  CTGTTTGACAGGATTGAGGCT-GGGGGTGAG-AATGAA-TACGGGCTTGG  1035
      |||||||||||   ||||||| ||||||||| |||||| |||||||||||
seq2  CTGTTTGACAGATCTGAGGCTGGGGGGTGAGAAATGAATTACGGGCTTGG  1050

seq1  GG  1037
      ||
seq2  GG  1052

seq1: chr7_35319532_35320597
seq2: B6Ng01-289G08.g_72_1163 (reverse)

seq1  AGTGCTCTTG-ACCCGTGGG---CCATCGC-TCCA-GTTCC-AGGTGCTT  43
      |||||||||| ||||| |||   ||||||| |||| ||||| ||||||| 
seq2  AGTGCTCTTGAACCCGGGGGGGCCCATCGCTTCCAGGTTCCAAGGTGCTA  50

seq1  CAGAATTCC-TCATG-CTTTCTTTTCTA-GCCT-CACATTTTATTAG-CA  88
      | ||||||| ||||| |||||||||||| |||| ||||||| ||||| ||
seq2  CGGAATTCCTTCATGCCTTTCTTTTCTAGGCCTCCACATTTAATTAGCCA  100

seq1  TTAATTCC-AAAAATAACTCA-ATGATGCT--AACAGAGTTTTGTCTTA-  133
      |||||||| |||||||||||| ||||||||  | ||||||||||||| | 
seq2  TTAATTCCAAAAAATAACTCAGATGATGCTTAACCAGAGTTTTGTCTAAT  150

seq1  TTCTGTAGACT-CAGAATACGGAGACTGTGAAA--GGGGTGCAAGACTGG  180
      ||||||||||| |||||||||||||||||||||  |||||||||||||||
seq2  TTCTGTAGACTCCAGAATACGGAGACTGTGAAAAGGGGGTGCAAGACTGG  200

seq1  T-CCAAAGGCATAA-GGAATAAAAATTATGAAAGAAACACGATTCGGTG-  227
      | |||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TCCCAAAGGCATAAGGGAATAAAAATTATGAAAGAAACACGATTCGGTGA  250

seq1  GCAGC-TTTTCTGTCAAAGCTCAGACACACAGAGATGAAAGAGACAGAGT  276
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTTCTGTCAAAGCTCAGACACACAGAGATGAAAGAGACAGAGT  300

seq1  CTTTGTGTCTAATTAC-TGGCTACCCTCCTGAGCTGAGCTCTTTGGCATC  325
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CTTTGTGTCTAATTACTTGGCTACCCT-CTGAGCTGAGCTCTTTGGCATC  349

seq1  CAATACTTCAC-AAAACAAGTCTCTTGGTCTTTCTTCTGTGGCTATTGCA  374
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTCACAAAAACAAGTCTCTTGGTCTTTCTTCTGTGGCTATTGCA  399

seq1  GAATACCAGGCACTAGGTAATTTAAAGAAAGGAGTAAGCATGAG-TTTGA  423
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATACCAGGCACTAGGTAATTTAAAGAAAGGAGTAAGCATGAGTTTTGA  449

seq1  CATCTGCCAAGGGATCCCTTGCTACGTCATAGCGGGATGGAAGGCAAGTG  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCAAGGGATCCCTTGCTACGTCATAGCGGGATGGAAGGCAAGTG  499

seq1  AGCATAGGTCAGAGAGAGGGTCTGAGCAGGGGGAAGATTCTCACGATTAA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTCAGAGAGAGGGTCTGAGCAGGGGGAAGATTCTCACGATTAA  549

seq1  CTCACTCCCACATGTATCAACCCACTCCCAACAACAGAGCCCTTGGAACC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCCACATGTATCAACCCACTCCCAACAACAGAGCCCTTGGAACC  599

seq1  CAGGCACCTCTTGAAAGTCCCACCTCTCACTTAACGCTTGCTGCAAGCAG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCTCTTGAAAGTCCCACCTCTCACTTAACGCTTGCTGCAAGCAG  649

seq1  TTGTGGTTCATCTTGAGCTACGTGTGTGTAGAGAATAACTCCTGGGAAAG  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCATCTTGAGCTACGTGTGTGTAGAGAATAACTCCTGGGAAAG  699

seq1  TTCAGCCTAGTAGTTCCTATTGGAGGGTGGAGTCTGGGCCAGCAGAGTGG  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTAGTAGTTCCTATTGGAGGGTGGAGTCTGGGCCAGCAGAGTGG  749

seq1  CTTGCCAAGTGGCTTCCTTGGACCAGTATCCTCCTTGGCAGCTCTTTAGA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAGTGGCTTCCTTGGACCAGTATCCTCCTTGGCAGCTCTTTAGA  799

seq1  TCTCTGCCCCTTGTATTTCAAACCCTGTGTGTTATGGAGTGAGTAATGGG  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCCCTTGTATTTCAAACCCTGTGTGTTATGGAGTGAGTAATGGG  849

seq1  AGCAGAGGCAAGCCTGCCCGATGAAGGGCCCACGCACCTCTAGCCCTGGC  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAAGCCTGCCCGATGAAGGGCCCACGCACCTCTAGCCCTGGC  899

seq1  GCTCTTACTTCTCTCTAGAGAGGCCAGATGAGAATTCACAGCAAAGAACT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACTTCTCTCTAGAGAGGCCAGATGAGAATTCACAGCAAAGAACT  949

seq1  GCTCAGTTGCTCCCTAGAGTTAGCTGCTGCTGCCGAGGGCTGCCTAGGCC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTGCTCCCTAGAGTTAGCTGCTGCTGCCGAGGGCTGCCTAGGCC  999

seq1  GAGAAGGCGCGTTAGCTCTCCATCACCATGCAATGCCTGAGCAAAACAAT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCGCGTTAGCTCTCCATCACCATGCAATGCCTGAGCAAAACAAT  1049

seq1  TTAAAAGAGAAAGGATTTACTTTGGCTCACGGCTGTAGAATTC  1066
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAGAAAGGATTTACTTTGGCTCACGGCTGTAGAATTC  1092