BAC Information

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BAC

Clone NameB6Ng01-290C19
Chromosome7 (Build37)
Map Location 100,379,016 - 100,380,174
singlet/doubletsinglet
Overlap genenone
Upstream geneDlg2, Ccdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
Downstream geneLOC666783, EG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C19.bB6Ng01-290C19.g
ACCGA087380GA087381
length1,1291,163
definitionB6Ng01-290C19.b B6Ng01-290C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacagtagggtggaattgccacactactttatttagtggctgtac
aagtttacagtctgtggtagtttgaatatgcttggtccaggagtgacata
ttaggagatgtggccttgatggagtaggtatggccttgttggaggaagta
tgtcactgtggagtgggccttgagaccctcttccaagttgtctggaagta
gtcttctcctgtttgcctttggaacaagatgtagaactctcagcatctct
agcaccatgcctgcctgcacactgccatgctttctgccatgatgatagtg
gactgaacctctgaaactgtaagctatccccaattaaatatttgccttta
taagacttgccttggccatgatgtcttttcatagcaatggaaacttagac
atagcaaaagatgagtattcctcttaccccacatttttgacagcgtgggc
tatcatcattttattgatctcagccattctgactgatgtaagatgaaata
tcaaagcagttttgatttatattttcctgatgactaaggatgttgaacat
ttctttagtgtttctaagacatctgtgttgtgtgtttttgagaactccct
gtttagatatgttgcctagttttcagttgggttatttgttttcctgatgt
ctagttttttgtttttgtgtttttagtttttaatattttagatattagcc
ctctactagatgtgtagttggtgaagatctttttctgtttagactgccac
taaataatggtgcattttgcctgatagaagcttttcagtttcatgaggtt
cccattcattaattgttgattttagtgcttgtgttaatcatgttctataa
agaaagtcttttcctgtgccaatgagttcaaagctattccacactttctc
ttctatcagttcagtgtcttccttccttccttcctccttctttcttcttc
ttcttctttctttcttctcttcttcttcttcttcttcttctcctcctctc
cttcgaattactcttctctcatcataacaccctggcatagctttctcttc
tctcattctcccggtcacccccttcaggttcctctcttcacagtctcagt
ccgtactccatttctaatatcatcaggat
gaattccacttgtgtgaactgggtaatgtttattccccttgtgtgaactg
ggtaatgttctatatgataatttctcttgcattcatttttgttttatttt
gcattatgtacttatcctctctctctctctctctctctctctctctctct
ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtacatgtgctcctta
tgtggatgctaaaggttgacatcaagtcacttcttaattagtttcccacc
tctcattgaacctacagctcatcaaatatctacactggctgagtacccta
gtaatctacttgtctctaccttcccataatggcgattacaggtacacttc
accctgaccaatttcttggtcttcatgtttaaacaactgactgatcaata
tcaccaaccctgtgccattcccataagtgcctacttcatgtggtagctat
gaattttagatgtgtatgtgtgttgcattgtccttgctgcatcataaatt
ctcttgagaatgtgatccaaagggaaggttcaaaaggaatgaggaaaatt
actccattgctcaacttaaaaagacacttaagcaaatatctcatcaaaac
caatgaaaatgaaaaaactgttactgtgaagtagattatcttaactccca
acaggagatgccaacaatgttgccagtagcaacaaccagttctttcttct
ccatgctttctaaagtctagtaacagctgatgtcaccattcaccttatga
ctgcttacaactaagggagcctgtgaaccacctgctcagcctatccaatg
aatagggaattgaaacttctgaagatgaagccccccaccccaattatcca
gaaatcctaaatcacaagtacaggtggaaccaggtcagaactcagtgcat
ggatgtcataactacctttccatcaaatgccacaggtattaggtaatttc
catgcaccagactgtcaaaaataaaaaatcctcattcttttcatctcact
agaaaataacttctaggcatttcagtaacttattgagcatcaatactaag
aaggcctagagaagatagttacattaagggcactgattgcctcttagacc
atggttttgtttaacaaaggttctcacaacatgtgaaactctcaggttcc
atggagagatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100379016_100380174
seq2: B6Ng01-290C19.g_66_1228 (reverse)

seq1  CAAATCT---CATGGAACCT--GAGGTTCACATGTTGTGAAGAACTTTG-  44
      |||||||   ||||||||||  ||| ||||||||||||||  | ||||| 
seq2  CAAATCTCTCCATGGAACCTGAGAGTTTCACATGTTGTGAGAACCTTTGT  50

seq1  TAAACAAAACCATGGTCCTTAAGAG--CATCAGTGCCCTTAAATGTTAAA  92
      |||||||||||||||||  ||||||   |||||||||||| |||||  ||
seq2  TAAACAAAACCATGGTC--TAAGAGGCAATCAGTGCCCTT-AATGT--AA  95

seq1  CTATC-TCTCTA-GCCTTCTTTAGTTATTGATTGCTCAAT-AGTTACTGA  139
      ||||| |||||| |||||| |||| |||||| |||||||| |||||||||
seq2  CTATCTTCTCTAGGCCTTC-TTAG-TATTGA-TGCTCAATAAGTTACTGA  142

seq1  AATGCCTAGAAATTA-TTTCTAGTGAGAATGAAAAGAATGAGGATTTTT-  187
      ||||||||||| ||| ||||||||||| ||||||||||||||||||||| 
seq2  AATGCCTAGAAGTTATTTTCTAGTGAG-ATGAAAAGAATGAGGATTTTTT  191

seq1  -ATTTTGACAGTTCTGGTGCATGGAAA-TACCTAATACCTGTGGCATTTG  235
        ||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ATTTTTGACAG-TCTGGTGCATGGAAATTACCTAATACCTGTGGCATTTG  240

seq1  ATGGAAAGGTAGTTATGACATCCATGCACCTGAGTTCTGACCTGGTTCCA  285
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGGAAAGGTAGTTATGACATCCATGCA-CTGAGTTCTGACCTGGTTCCA  289

seq1  CCTGTACTTGTGATTTAGGATTTCTGGATAATTGGGGTGGGGGGCTTCAT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTTGTGATTTAGGATTTCTGGATAATTGGGGTGGGGGGCTTCAT  339

seq1  CTTCAGAAGTTTCAATTCCCTATTCATTGGATAGGCTGAGCAGGTGGTTC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGTTTCAATTCCCTATTCATTGGATAGGCTGAGCAGGTGGTTC  389

seq1  ACAGGCTCCCTTAGTTGTAAGCAGTCATAAGGTGAATGGTGACATCAGCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCCTTAGTTGTAAGCAGTCATAAGGTGAATGGTGACATCAGCT  439

seq1  GTTACTAGACTTTAGAAAGCATGGAGAAGAAAGAACTGGTTGTTGCTACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAGACTTTAGAAAGCATGGAGAAGAAAGAACTGGTTGTTGCTACT  489

seq1  GGCAACATTGTTGGCATCTCCTGTTGGGAGTTAAGATAATCTACTTCACA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATTGTTGGCATCTCCTGTTGGGAGTTAAGATAATCTACTTCACA  539

seq1  GTAACAGTTTTTTCATTTTCATTGGTTTTGATGAGATATTTGCTTAAGTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGTTTTTTCATTTTCATTGGTTTTGATGAGATATTTGCTTAAGTG  589

seq1  TCTTTTTAAGTTGAGCAATGGAGTAATTTTCCTCATTCCTTTTGAACCTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAAGTTGAGCAATGGAGTAATTTTCCTCATTCCTTTTGAACCTT  639

seq1  CCCTTTGGATCACATTCTCAAGAGAATTTATGATGCAGCAAGGACAATGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGGATCACATTCTCAAGAGAATTTATGATGCAGCAAGGACAATGC  689

seq1  AACACACATACACATCTAAAATTCATAGCTACCACATGAAGTAGGCACTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATACACATCTAAAATTCATAGCTACCACATGAAGTAGGCACTT  739

seq1  ATGGGAATGGCACAGGGTTGGTGATATTGATCAGTCAGTTGTTTAAACAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATGGCACAGGGTTGGTGATATTGATCAGTCAGTTGTTTAAACAT  789

seq1  GAAGACCAAGAAATTGGTCAGGGTGAAGTGTACCTGTAATCGCCATTATG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAAGAAATTGGTCAGGGTGAAGTGTACCTGTAATCGCCATTATG  839

seq1  GGAAGGTAGAGACAAGTAGATTACTAGGGTACTCAGCCAGTGTAGATATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAGAGACAAGTAGATTACTAGGGTACTCAGCCAGTGTAGATATT  889

seq1  TGATGAGCTGTAGGTTCAATGAGAGGTGGGAAACTAATTAAGAAGTGACT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGCTGTAGGTTCAATGAGAGGTGGGAAACTAATTAAGAAGTGACT  939

seq1  TGATGTCAACCTTTAGCATCCACATAAGGAGCACATGTACAGACACACAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAACCTTTAGCATCCACATAAGGAGCACATGTACAGACACACAC  989

seq1  ACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAG  1039

seq1  AGAGAGAGGATAAGTACATAATGCAAAATAAAACAAAAATGAATGCAAGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGATAAGTACATAATGCAAAATAAAACAAAAATGAATGCAAGA  1089

seq1  GAAATTATCATATAGAACATTACCCAGTTCACACAAGGGGAATAAACATT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATCATATAGAACATTACCCAGTTCACACAAGGGGAATAAACATT  1139

seq1  ACCCAGTTCACACAAGTGGAATTC  1159
      ||||||||||||||||||||||||
seq2  ACCCAGTTCACACAAGTGGAATTC  1163