BAC Information

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BAC

Clone NameB6Ng01-291N15
Chromosome7 (Build37)
Map Location 104,805,301 - 104,939,421
singlet/doubletdoublet
Overlap geneRsf1, LOC100040211, Clns1a, Aqp11, LOC100040594
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, LOC622994
Downstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291N15.bB6Ng01-291N15.g
ACCGA088634GA088635
length946650
definitionB6Ng01-291N15.b B6Ng01-291N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,805,301 - 104,806,245)(104,938,774 - 104,939,421)
sequence
gaattcaggccatcaggccggcacagcaaatgcttttacctgctgagcca
tctttctgggcctcttgacactgatttagatggacagttcgttgtgtagt
ttaaaagtaaaaacacattatttctttagtgttttttttttttttaatcc
tgtggctgtgtgcatgtgttaagcctggttccaggttcagcctctcacac
tgcaaaaacaataaaaaaaacaaaggaactcttttgtgtctcttattctg
gcaagaaaatgtttatctttaaaggtttctttctttaagccatctgtcga
cattcctcagtaaagtaaaacttgctagtgtattactcaaaaccgcctat
gttgtccctccgcgtccaaggggaggagcgacctacagaagcacttgtgg
aacgagtgcttgctcattgtccccttgattgtagttgtgggggtgatagt
gacttgtagctggtggtgccttttttttttttccctttgagacagggttt
ctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggc
cttgaactcagaaatccgcctgcctctgcctcccaagtgctgggattaaa
ggcgtgtgccaccacgcctggcatatctgagcctattttgttctaaaata
atttgtatatgttaaattgcctaatctttattagataaataagttttcag
gaacccaagtgggtatcagaaactgcagataatactgaaacttacatata
gataaattttaatctataaatttatatagatgtatagtgaaaagagtctg
tgatgaatgggtgttggctgggacatgctaggcactcagctcgactagta
ggatttcttttccctcttgtttgtttgtttgtttgcatgttggctgagca
ttctaccactaagttgggcttctgtgtgtgtgtgtggtgtgttgtg
gaattctccacaggcaaataacaggtaggaagcagcactccaggcaaagc
agcaattcggaaaagagaagagaagaggaggcggaggacagaacccagaa
agtttaaggatgcaaaagtaggcaatggtcagctctccaggagtttctta
tttcacactaaaaagtttgaaggtaatccttcaactgtgaaaaggggggt
gggaggggaggaagcactgatagaccaggttttgttttacaaagacccct
caaggtacacagcttcctgcaaacctagcaaaagacctcaaaacaggtac
tcagaaaatatacatggagttgaactggataagctttttatcaagtaaac
tcttacagatgaagggccactttccctacggacttgctgtggccaggact
tgtaggacaggtccagcaaccttaattactgcgcaccattctctgtacaa
ctggagtcccccagaggaccttcattgtttacaagtctacctcacccact
aaactttgagctcttggtcttgtgagcaaagaccagctgtattgatgtac
ttgaaatcagcacagactttagcaggcagcttgaaacactgtagcacttc
agattgtagcagtaaatattggataaacagatgaaataaataagtaaatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104805301_104806245
seq2: B6Ng01-291N15.b_48_993

seq1  GAATTCAGGCCATCAGGCCGGCACAGCAAATGCTTTTACCTGCTGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCATCAGGCCGGCACAGCAAATGCTTTTACCTGCTGAGCCA  50

seq1  TCTTTCTGGGCCTCTTGACACTGATTTAGATGGACAGTTCGTTGTGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGGCCTCTTGACACTGATTTAGATGGACAGTTCGTTGTGTAGT  100

seq1  TTAAAAGTAAAAACACATTATTTCTTTAGTGTTTTTTTTTTTTTTAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTAAAAACACATTATTTCTTTAGTGTTTTTTTTTTTTTTAATCC  150

seq1  TGTGGCTGTGTGCATGTGTTAAGCCTGGTTCCAGGTTCAGCCTCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGTGTGCATGTGTTAAGCCTGGTTCCAGGTTCAGCCTCTCACAC  200

seq1  TGCAAAAACAATAAAAAAAACAAAGGAACTCTTTTGTGTCTCTTATTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAACAATAAAAAAAACAAAGGAACTCTTTTGTGTCTCTTATTCTG  250

seq1  GCAAGAAAATGTTTATCTTTAAAGGTTTCTTTCTTTAAGCCATCTGTCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAATGTTTATCTTTAAAGGTTTCTTTCTTTAAGCCATCTGTCGA  300

seq1  CATTCCTCAGTAAAGTAAAACTTGCTAGTGTATTACTCAAAACCGCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCAGTAAAGTAAAACTTGCTAGTGTATTACTCAAAACCGCCTAT  350

seq1  GTTGTCCCTCCGCGTCCAAGGGGAGGAGCGACCTACAGAAGCACTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCCTCCGCGTCCAAGGGGAGGAGCGACCTACAGAAGCACTTGTGG  400

seq1  AACGAGTGCTTGCTCATTGTCCCCTTGATTGTAGTTGTGGGGGTGATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTGCTTGCTCATTGTCCCCTTGATTGTAGTTGTGGGGGTGATAGT  450

seq1  GACTTGTAGCTGGTGGTGCCTTTTTTTTTTTTCCCTTTGAGACAGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTAGCTGGTGGTGCCTTTTTTTTTTTTCCCTTTGAGACAGGGTTT  500

seq1  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC  550

seq1  CTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA  600

seq1  GGCGTGTGCCACCACGCCTGGCATATCTGAGCCTATTTTGTTCTAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGCCACCACGCCTGGCATATCTGAGCCTATTTTGTTCTAAAATA  650

seq1  ATTTGTATATGTTAAATTGCCTAATCTTTATTAGATAAATAAGTTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATATGTTAAATTGCCTAATCTTTATTAGATAAATAAGTTTTCAG  700

seq1  GAACCCAAGTGGGTATCAGAAACTGCAGATAATACTGAAACTTACATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAGTGGGTATCAGAAACTGCAGATAATACTGAAACTTACATATA  750

seq1  GATAAATTTTAATCTATAAATTTATATAGATGTATAGTGAAAAGAGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTTAATCTATAAATTTATATAGATGTATAGTGAAAAGAGTCTG  800

seq1  TGATGAATGGGTGTTGGCTGGGACATGCTAGGCACTCAGCTCGACTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAATGGGTGTTGGCTGGGACATGCTAGGCACTCAGCTCGACTAGTA  850

seq1  GGA-TTCTTTTCCTTCTTGTTTGTTTGTTTGTTTGCATGTTGGCTGAGCA  899
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTTTCCCTCTTGTTTGTTTGTTTGTTTGCATGTTGGCTGAGCA  900

seq1  TTCTACCACTAAGTTGG--CTCTGTGTGTGTGTGTGTGTGTGTGTGTG  945
      |||||||||||||||||   |||||||||||||||| |||||| ||||
seq2  TTCTACCACTAAGTTGGGCTTCTGTGTGTGTGTGTG-GTGTGT-TGTG  946

seq1: chr7_104938774_104939421
seq2: B6Ng01-291N15.g_70_719 (reverse)

seq1  AATTTACTTATTTA-TTCATCTGTTTATCCAATA-TTACTGCTACAATCT  48
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AATTTACTTATTTATTTCATCTGTTTATCCAATATTTACTGCTACAATCT  50

seq1  GAAGTGCTACAGTGTTTCAAGCTGCCTGCTAAAGTCTGTGCTGATTTCAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTACAGTGTTTCAAGCTGCCTGCTAAAGTCTGTGCTGATTTCAA  100

seq1  GTACATCAATACAGCTGGTCTTTGCTCACAAGACCAAGAGCTCAAAGTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCAATACAGCTGGTCTTTGCTCACAAGACCAAGAGCTCAAAGTTT  150

seq1  AGTGGGTGAGGTAGACTTGTAAACAATGAAGGTCCTCTGGGGGACTCCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGAGGTAGACTTGTAAACAATGAAGGTCCTCTGGGGGACTCCAG  200

seq1  TTGTACAGAGAATGGTGCGCAGTAATTAAGGTTGCTGGACCTGTCCTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGAGAATGGTGCGCAGTAATTAAGGTTGCTGGACCTGTCCTACA  250

seq1  AGTCCTGGCCACAGCAAGTCCGTAGGGAAAGTGGCCCTTCATCTGTAAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGCCACAGCAAGTCCGTAGGGAAAGTGGCCCTTCATCTGTAAGA  300

seq1  GTTTACTTGATAAAAAGCTTATCCAGTTCAACTCCATGTATATTTTCTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTGATAAAAAGCTTATCCAGTTCAACTCCATGTATATTTTCTGA  350

seq1  GTACCTGTTTTGAGGTCTTTTGCTAGGTTTGCAGGAAGCTGTGTACCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTTTTGAGGTCTTTTGCTAGGTTTGCAGGAAGCTGTGTACCTTG  400

seq1  AGGGGTCTTTGTAAAACAAAACCTGGTCTATCAGTGCTTCCTCCCCTCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCTTTGTAAAACAAAACCTGGTCTATCAGTGCTTCCTCCCCTCCC  450

seq1  ACCCCCCTTTTCACAGTTGAAGGATTACCTTCAAACTTTTTAGTGTGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTTTTCACAGTTGAAGGATTACCTTCAAACTTTTTAGTGTGAAA  500

seq1  TAAGAAACTCCTGGAGAGCTGACCATTGCCTACTTTTGCATCCTTAAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTCCTGGAGAGCTGACCATTGCCTACTTTTGCATCCTTAAACT  550

seq1  TTCTGGGTTCTGTCCTCCGCCTCCTCTTCTCTTCTCTTTTCCGAATTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTCTGTCCTCCGCCTCCTCTTCTCTTCTCTTTTCCGAATTGCT  600

seq1  GCTTTGCCTGGAGTGCTGCTTCCTACCTGTTATTTGCCTGTGGAGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCTGGAGTGCTGCTTCCTACCTGTTATTTGCCTGTGGAGAATTC  650