BAC Information

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BAC

Clone NameB6Ng01-292K18
Chromosome7 (Build37)
Map Location 7,423,529 - 7,529,712
singlet/doubletdoublet
Overlap geneV2r5, LOC100041883, EG628117, Vmn2r33
Upstream geneOlfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36
Downstream geneLOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292K18.bB6Ng01-292K18.g
ACCGA089250GA089251
length1,1141,112
definitionB6Ng01-292K18.b B6Ng01-292K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,528,601 - 7,529,712)(7,423,529 - 7,424,637)
sequence
gaattccattatgcatctccaaatttctattagcgtggggatgcacaata
gaaaagttattggtgatgacgtcatatctgatgtgtataactgagaagag
tttgaattcttgagatcagtggtgaaagaatacttgatttcaaatatgtc
ctttctttcttcctctatggtaatttcccaagctttctttgcaagaggac
ctgtcaagtatcattcacacaaaggcctaaaaccagttgggtcttaaatc
caagacaaaaattttgaactaaggtgtccattaacatatcaaactggaca
gtggcctccagtttctctcagcatccctctgtctctactacatataggtc
cctcctggctggcatgcctccccaaactagctccaactttctagaccagg
tgatcccctggactttccttcttccagatcttctgacatctatataactc
agccacttataaccgtgttagtctcttcactcaggctgcccctcttggtt
ggtggcccctctttctcttttcagatcgcctatcctcacatggaccagct
tagggtcatgttcactctgttaactctcacagaggtttcctgtctggtct
ggaactcactgtgacaggccaatttctaatcccagacattaacttgcctc
tgctagcagttctgtaatttaggagtgtttcagcaagcccggcctttgta
gctcaaggaaatactggcacatctataatcacaacactctccctaacaga
ttgagtgtacagctccatcttgggaggtgtgtctacttcctggcacttca
tcatgtctgaactacattgtacagaagacattgcactgagaatagccaga
gaaaacaggcattttggtgaagacaaaataatgggaccttgacaataaaa
tttctaaagcagatctaactaagctttcctttggaaatcagatttggatc
aatgtgtgaattgtgtgcagaaggttctttgaaactttttgggatctgtc
agtccacagaaaactagttttatcagtatggtcatggcacgaaatgggag
aagttgaagagtctttccctctatccaggaggtgcaacctggagttttct
atacccatgtgatc
gaattcctcttgttgtttgatattaatagtttataggagcttcttcttat
gtttattcacatgcaaatgtggaatacataatctgtatcagtagttccag
atgttctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcttagtactaaactgggaataactgtcattcaattgtctatcacta
actcatgcttaactcactactattcatttgaggtatgaagtaggatttca
tggtcttttcacctagctcattttcatatgtctatttttcataatgtgtt
atgaaaattttgttatattatgatggcttagttttgtttaatcttgtttt
attttactattctcccatagaatcctgtcattttctagtgagtgacataa
agtggatttgatgaaaaaggaagaaaatatgaatattaactatgatatat
ttgccaggagaactgacaattgttcacatcccagtagaagaaatggaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aacaatcaaaattaaaaacaaattctccctgttctcagagaatgatcttt
ctgttatgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatattcatcaaatgtattgttcttgaatgacctttttttccctctc
attaaacattattctgttttcttccattttttaataaagcaaagttctcc
ttttgtatatgaatgtgtcttcctacctctgccggaatcttaggaatgtc
ttaaaaaataaaccagttttgttgtctttgatttcatttagagaatgtta
acaaaaaagttcaattataactgaaaattatatgttgcttttgtctgggt
tgctgttattgctgtacttgaggtgtgtcaatagccctttattttttctg
ttgttctagtgctgtctataggttccttttgatctttctggtcatctatg
gaaaagagtgaatgggatttctttcaatttactaaaagtcatgttttctt
atgaatatgattttctgggaatgtatcataagtgatgtccttttataatt
ggtaaacatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7528601_7529712
seq2: B6Ng01-292K18.b_45_1158 (reverse)

seq1  GATCACATGGGTTATAGAAAACCTCA-GTTGCACCTCCTTGATAGA-GGA  48
      ||||||||||| ||||||||||  || |||||||||||| |||||| |||
seq2  GATCACATGGG-TATAGAAAACTCCAGGTTGCACCTCCTGGATAGAGGGA  49

seq1  AAGACTCTTCAAC-TCTCCCAATTTCGTGCCATGACCAATACTGATAAAA  97
      ||||||||||||| |||||| |||||||||||||||| ||||||||||||
seq2  AAGACTCTTCAACTTCTCCC-ATTTCGTGCCATGACC-ATACTGATAAAA  97

seq1  CTAGTTTTCTGT-GACTGACAGAT-CCAAAAAGTTTCAAAGAACCTTCTG  145
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  CTAGTTTTCTGTGGACTGACAGATCCCAAAAAGTTTCAAAGAACCTTCTG  147

seq1  CACACAATTCACACATTGATCCAAATCTGATTTCCAAAGGAAAGCTTAGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATTCACACATTGATCCAAATCTGATTTCCAAAGGAAAGCTTAGT  197

seq1  TAGATCTGCTTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTGCTTTAGAAATTTTATTGTCAAGGTCCCATTATTTTGTCTTCA  247

seq1  CCAAAATGCCTGTTTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGCCTGTTTTCTCTGGCTATTCTCAGTGCAATGTCTTCTGTACA  297

seq1  ATGTAGTTCAGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTCAGACATGATGAAGTGCCAGGAAGTAGACACACCTCCCAAGA  347

seq1  TGGAGCTGTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGTACACTCAATCTGTTAGGGAGAGTGTTGTGATTATAGATGTG  397

seq1  CCAGTATTTCCTTGAGCTACAAAGGCCGGGCTTGCTGAAACACTCCTAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTCCTTGAGCTACAAAGGCCGGGCTTGCTGAAACACTCCTAAA  447

seq1  TTACAGAACTGCTAGCAGAGGCAAGTTAATGTCTGGGATTAGAAATTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACTGCTAGCAGAGGCAAGTTAATGTCTGGGATTAGAAATTGGC  497

seq1  CTGTCACAGTGAGTTCCAGACCAGACAGGAAACCTCTGTGAGAGTTAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGTGAGTTCCAGACCAGACAGGAAACCTCTGTGAGAGTTAACA  547

seq1  GAGTGAACATGACCCTAAGCTGGTCCATGTGAGGATAGGCGATCTGAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACATGACCCTAAGCTGGTCCATGTGAGGATAGGCGATCTGAAAA  597

seq1  GAGAAAGAGGGGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGGGGCCACCAACCAAGAGGGGCAGCCTGAGTGAAGAGACTAA  647

seq1  CACGGTTATAAGTGGCTGAGTTATATAGATGTCAGAAGATCTGGAAGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTATAAGTGGCTGAGTTATATAGATGTCAGAAGATCTGGAAGAAG  697

seq1  GAAAGTCCAGGGGATCACCTGGTCTAGAAAGTTGGAGCTAGTTTGGGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCAGGGGATCACCTGGTCTAGAAAGTTGGAGCTAGTTTGGGGAG  747

seq1  GCATGCCAGCCAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCAGCCAGGAGGGACCTATATGTAGTAGAGACAGAGGGATGCTGA  797

seq1  GAGAAACTGGAGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGGAGGCCACTGTCCAGTTTGATATGTTAATGGACACCTTAGT  847

seq1  TCAAAATTTTTGTCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTTGTCTTGGATTTAAGACCCAACTGGTTTTAGGCCTTTGTG  897

seq1  TGAATGATACTTGACAGGTCCTCTTGCAAAGAAAGCTTGGGAAATTACCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGATACTTGACAGGTCCTCTTGCAAAGAAAGCTTGGGAAATTACCA  947

seq1  TAGAGGAAGAAAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGAAAGAAAGGACATATTTGAAATCAAGTATTCTTTCACCACT  997

seq1  GATCTCAAGAATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAAGAATTCAAACTCTTCTCAGTTATACACATCAGATATGACGTC  1047

seq1  ATCACCAATAACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAATAACTTTTCTATTGTGCATCCCCACGCTAATAGAAATTTGGA  1097

seq1  GATGCATAATGGAATTC  1112
      |||||||||||||||||
seq2  GATGCATAATGGAATTC  1114

seq1: chr7_7423529_7424637
seq2: B6Ng01-292K18.g_63_1174

seq1  GAATTCCTCTTGTTGTTTGATATTAATAGTTTATAGGAGCTTCTTCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGTTGTTTGATATTAATAGTTTATAGGAGCTTCTTCTTAT  50

seq1  GTTTATTCACATGCAAATGTGGAATACATAATCTGTATCAGTAGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCACATGCAAATGTGGAATACATAATCTGTATCAGTAGTTCCAG  100

seq1  ATGTTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGATTATCGAATTGACAGTTTGAATTATATTTTCAAAAATAAAG  150

seq1  TATTCTTAGTACTAAACTGGGAATAACTGTCATTCAATTGTCTATCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAGTACTAAACTGGGAATAACTGTCATTCAATTGTCTATCACTA  200

seq1  ACTCATGCTTAACTCACTACTATTCATTTGAGGTATGAAGTAGGATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCTTAACTCACTACTATTCATTTGAGGTATGAAGTAGGATTTCA  250

seq1  TGGTCTTTTCACCTAGCTCATTTTCATATGTCTATTTTTCATAATGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTTCACCTAGCTCATTTTCATATGTCTATTTTTCATAATGTGTT  300

seq1  ATGAAAATTTTGTTATATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATTTTGTTATATTATGATGGCTTAGTTTTGTTTAATCTTGTTTT  350

seq1  ATTTTACTATTCTCCCATAGAATCCTGTCATTTTCTAGTGAGTGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATTCTCCCATAGAATCCTGTCATTTTCTAGTGAGTGACATAA  400

seq1  AGTGGATTTGATGAAAAAGGAAGAAAATATGAATATTAACTATGATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTTGATGAAAAAGGAAGAAAATATGAATATTAACTATGATATAT  450

seq1  TTGCCAGGAGAACTGACAATTGTTCACATCCCAGTAGAAGAAATGGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGAGAACTGACAATTGTTCACATCCCAGTAGAAGAAATGGAAAC  500

seq1  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAGGATATATTATGTGAGAATAACAAGTTATTTTCAATAAATAA  550

seq1  AACAATCAAAATTAAAAACAAATTCTCCCTGTTCTCAGAGAATGATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAAAATTAAAAACAAATTCTCCCTGTTCTCAGAGAATGATCTTT  600

seq1  CTGTTATGTGTTGTGTTCTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGTGTTGTGTTCTTTTGGTAGGTGTTTTTGTCAAGAATTATTCC  650

seq1  ACACATATTCATCAAATGTATTGTTCTTGAATGACCTTTTTTTCCCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTCATCAAATGTATTGTTCTTGAATGACCTTTTTTTCCCTCTC  700

seq1  ATTAAACATTATTCTGTTTTCTTCCATTTTTTAATAAAGCAAAGTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACATTATTCTGTTTTCTTCCATTTTTTAATAAAGCAAAGTTCTCC  750

seq1  TTTTGTATATGAATGTGTCTTCCTACCTCTGCCGGAATCTTAGGAATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATGAATGTGTCTTCCTACCTCTGCCGGAATCTTAGGAATGTC  800

seq1  TTAAAAAATAAACCAGTTTTGTTGTCTTTGATTTCATTTAGAGAATGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAAACCAGTTTTGTTGTCTTTGATTTCATTTAGAGAATGTTA  850

seq1  ACAAAAAAGTTCAATTATAACTGAAAATTATATGTTGCTTTTGTCT-GGT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAAAAAGTTCAATTATAACTGAAAATTATATGTTGCTTTTGTCTGGGT  900

seq1  TGCTGTTATTGCTGTACTTGAGGTGTGTCAATAG-CCTTTATTTTTTCTG  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTGTTATTGCTGTACTTGAGGTGTGTCAATAGCCCTTTATTTTTTCTG  950

seq1  TTGTTCTAGTGCTGTCTATAGGTTCC-TTTGATC-TTCTGGTCATCTTAT  996
      |||||||||||||||||||||||||| ||||||| ||||||||||| |||
seq2  TTGTTCTAGTGCTGTCTATAGGTTCCTTTTGATCTTTCTGGTCATC-TAT  999

seq1  GGAAAAGAGTGAATGG--ATTCTTCAAATTTACTAAAAAGTCATGTTT--  1042
      ||||||||||||||||   |||||  |||||||| |||||||||||||  
seq2  GGAAAAGAGTGAATGGGATTTCTTTCAATTTACT-AAAAGTCATGTTTTC  1048

seq1  CTATGAATATGATTTTCTGGAATTGTGTTCATTAGTGAATGTCCTTTTAT  1092
       ||||||||||||||||||| | |||  |||| |||| ||||||||||||
seq2  TTATGAATATGATTTTCTGGGAATGT-ATCATAAGTG-ATGTCCTTTTAT  1096

seq1  TATATGGTAAACATTTT  1109
       || |||||||||||||
seq2  AAT-TGGTAAACATTTT  1112