BAC Information

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BAC

Clone NameB6Ng01-293B15
Chromosome7 (Build37)5 (Build37)
Map Location 76,952,969 - 76,954,15666,857,281 - 66,857,637
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293B15.bB6Ng01-293B15.g
ACCGA089564GA089565
length1,183429
definitionB6Ng01-293B15.b B6Ng01-293B15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,952,969 - 76,954,156)(66,857,281 - 66,857,637)
sequence
gaattctttcttcagtttgtaaaacagcacatttccacgtctgagggttt
ttaaacttttatttatatattatctttctagttaaaggcttagcggctgg
caaaaggttgtgtaaaatagaaaaataattggcagatagtttatagatat
gtatgcttttatggcatatttctatagggaatctaacagagcaagaatgg
gttgaaaattcacttgaatattaatctttgctctacaaattccaatgctt
aaaaactattagcattacagaagcataatttatagcacattatattttcc
taacttaaaatacataagctaaattcttagacattaatctttctttacca
tttttcaaagcctccaatttccctgaaatacagtgggacttattttaatc
agaagcacattgataaaaaggcaataaaggctcaatacaaggatggacag
gcacagaccatatgatacgtttataattttaaattctttttaataaagca
ttcttatcctctatgcaagctaagaagaggctcttggtctttttctctct
gcgggtactaaaagtaattctgaaggaaaaaaaagaaaagaaagaaaaag
aaaagaaaaagcaacaaaagagatatcagatctaatatcccacccaattt
ctgagttaagccagtggcaggtatgcttcgaagcaagactatttagacac
attgatttttgttgtcacttttctccctatttcatatgtcacatcaaggc
ttggaaattagatgaatgtgagaggggtccgctgatggctgttcctcagg
aggaattttcaaagtcagcctagctttggttgataaaagtggtcctgcgc
acagctctcccctgcccacggggaagtttaggcaaactcaacttcatcac
tttactgggattctgggttgtcaaagaggcagctacaaactgaagtctgg
gacattttaaaactgacgaattaagaatgggagggggggaagtacgaaaa
caaaccccacaaaacaaaagacagatacaaaaccaagctccatcgctctc
ccgcccaccccaacacgcttcaaggtccttttaaatgaaatacaagttaa
tttcaagtaagaaagttcaacgtattttatagaggaaatgtatgtaagca
gcatgctttccatcatataacctctaagggtaa

aataaaatctagggatttgggtatacctctaagagattcttcttgtttag
attctttgagttgagaaaatccaccctaaatctgggccacaccttgtggt
ggcagccaacataaacagggatggagaaagcttttcctttatgcctgctt
gctctcagtctttttggtaagttcatctgatactttactgctttgttatc
acttcgctggtacgtgaacatgcagaattccaatataaacagtagagcag
ctgagactctagcctatggaccaaacagtcaccaggttattggttttccc
atcaggagacatctgttgttagactagccagaacacggactaagactaaa
agccgcgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_76952969_76954156
seq2: B6Ng01-293B15.b_46_1228 (reverse)

seq1  TTACCC-TAGAAG-TATATGATTGAAAACAATGCTGCCTACAT-CACTTC  47
      |||||| |||| | |||||||| |||| | ||||||| ||||| || |||
seq2  TTACCCTTAGAGGTTATATGATGGAAAGC-ATGCTGCTTACATACATTTC  49

seq1  CTCTATAAAAATACGTTTAAACTTTCTTTACTGAAATTAAACTTGGTATT  97
      |||||| |||||||| || |||||||||   ||||||| ||||| |||||
seq2  CTCTAT-AAAATACG-TTGAACTTTCTTACTTGAAATT-AACTT-GTATT  95

seq1  CATTTTAAAAGGACTTTGAAGCGTGTGGGGGTGGGGCGGGAGGAGGCGAT  147
         ||||||||||| ||||||||||| ||||| |||||||||   |||| 
seq2  TCATTTAAAAGGACCTTGAAGCGTGTTGGGGT-GGGCGGGAG--AGCGA-  141

seq1  TGGAGCTTGGGTTTTTGTATCTGTCTTTTGTTTTGTGGGGTTTGTTTTCG  197
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTGG--TTTTGTATCTGTCTTTTGTTTTGTGGGGTTTGTTTTCG  189

seq1  TACT--CCCCCCT-CCATTCTTAATTCGTCAGTTTTAAAATGTCCCAGAC  244
      ||||  ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCCCCCTCCCATTCTTAATTCGTCAGTTTTAAAATGTCCCAGAC  239

seq1  TTCAGTTTGTAGCTGCCTCTTTGACAACCCAGAATCCCAGTAAAGTGATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGTAGCTGCCTCTTTGACAACCCAGAATCCCAGTAAAGTGATG  289

seq1  AAGTTGAGTTTGCCTAAACTTCCCCGTGGGCAGGGGAGAGCTGTGCGCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGTTTGCCTAAACTTCCCCGTGGGCAGGGGAGAGCTGTGCGCAG  339

seq1  GACCACTTTTATCAACCAAAGCTAGGCTGACTTTGAAAATTCCTCCTGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTTTTATCAACCAAAGCTAGGCTGACTTTGAAAATTCCTCCTGAG  389

seq1  GAACAGCCATCAGCGGACCCCTCTCACATTCATCTAATTTCCAAGCCTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCATCAGCGGACCCCTCTCACATTCATCTAATTTCCAAGCCTTG  439

seq1  ATGTGACATATGAAATAGGGAGAAAAGTGACAACAAAAATCAATGTGTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATATGAAATAGGGAGAAAAGTGACAACAAAAATCAATGTGTCT  489

seq1  AAATAGTCTTGCTTCGAAGCATACCTGCCACTGGCTTAACTCAGAAATTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTTGCTTCGAAGCATACCTGCCACTGGCTTAACTCAGAAATTG  539

seq1  GGTGGGATATTAGATCTGATATCTCTTTTGTTGCTTTTTCTTTTCTTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATATTAGATCTGATATCTCTTTTGTTGCTTTTTCTTTTCTTTTT  589

seq1  CTTTCTTTTCTTTTTTTTCCTTCAGAATTACTTTTAGTACCCGCAGAGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCTTTTTTTTCCTTCAGAATTACTTTTAGTACCCGCAGAGAG  639

seq1  AAAAAGACCAAGAGCCTCTTCTTAGCTTGCATAGAGGATAAGAATGCTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACCAAGAGCCTCTTCTTAGCTTGCATAGAGGATAAGAATGCTTT  689

seq1  ATTAAAAAGAATTTAAAATTATAAACGTATCATATGGTCTGTGCCTGTCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAATTTAAAATTATAAACGTATCATATGGTCTGTGCCTGTCC  739

seq1  ATCCTTGTATTGAGCCTTTATTGCCTTTTTATCAATGTGCTTCTGATTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTATTGAGCCTTTATTGCCTTTTTATCAATGTGCTTCTGATTAA  789

seq1  AATAAGTCCCACTGTATTTCAGGGAAATTGGAGGCTTTGAAAAATGGTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCCCACTGTATTTCAGGGAAATTGGAGGCTTTGAAAAATGGTAA  839

seq1  AGAAAGATTAATGTCTAAGAATTTAGCTTATGTATTTTAAGTTAGGAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTAATGTCTAAGAATTTAGCTTATGTATTTTAAGTTAGGAAAA  889

seq1  TATAATGTGCTATAAATTATGCTTCTGTAATGCTAATAGTTTTTAAGCAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTGCTATAAATTATGCTTCTGTAATGCTAATAGTTTTTAAGCAT  939

seq1  TGGAATTTGTAGAGCAAAGATTAATATTCAAGTGAATTTTCAACCCATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGTAGAGCAAAGATTAATATTCAAGTGAATTTTCAACCCATTC  989

seq1  TTGCTCTGTTAGATTCCCTATAGAAATATGCCATAAAAGCATACATATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTTAGATTCCCTATAGAAATATGCCATAAAAGCATACATATCT  1039

seq1  ATAAACTATCTGCCAATTATTTTTCTATTTTACACAACCTTTTGCCAGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATCTGCCAATTATTTTTCTATTTTACACAACCTTTTGCCAGCC  1089

seq1  GCTAAGCCTTTAACTAGAAAGATAATATATAAATAAAAGTTTAAAAACCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCCTTTAACTAGAAAGATAATATATAAATAAAAGTTTAAAAACCC  1139

seq1  TCAGACGTGGAAATGTGCTGTTTTACAAACTGAAGAAAGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGTGGAAATGTGCTGTTTTACAAACTGAAGAAAGAATTC  1183


seq1: chr5_66857281_66857637
seq2: B6Ng01-293B15.g_429_501 (reverse)

seq1  CACACACACACACACACAGTCATTTTAGGTATTAGTGCCAAACCACTCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTTGCATTAAGAATATAGTTGTGAGGGCTGGGGAGATGGCTCTGTCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCATAAGAACCTAGGTTCCTATCTCCAGCACCCAAGCAAAGAGCCACCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCAACAGTGGAATGTACAGGGACAGGAGGATCCCTGGGCGCGGCCAGCCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCTAATGAGAAAGCTCCGGGCCTATCTCTAAAAGCACAGGGACAGGTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATCAACCACACTGAAGTTGCTCTCTGACCTTCCCATGCATGAACACA  300
                                        | ||  ||   |||||
seq2  ----------------------------------CACACACACACACACA  16

seq1  CACACACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACGCACGCACGCACGCACGCACGCACGCACGCA  66

seq1  CGCACGC  357
      |||||||
seq2  CGCACGC  73


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