BAC Information

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BAC

Clone NameB6Ng01-293J01
Chromosome7 (Build37)
Map Location 6,257,489 - 6,306,916
singlet/doubletdoublet
Overlap geneZfp667, Zfp583, LOC100042467, LOC100042459
Upstream geneNlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821
Downstream geneZfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293J01.bB6Ng01-293J01.g
ACCGA089914GA089915
length1,1251,161
definitionB6Ng01-293J01.b B6Ng01-293J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,257,489 - 6,258,625)(6,305,810 - 6,306,916)
sequence
gaattcacactggagagaagccttacgcatgcaaaatctgtaagaagtcc
ttcgctcagcgcatttccctcattctccatgagagaagccatactgggga
gagaccctatgagtgtaatgaatgtgggaaggctttcagtagtggttccg
accttatccgacatcagagaagtcactcttcagagaaaccatatgaatgt
agcaaatgtggtaaggcttatagtcggagctcatcgctgattcgacatca
gagtatacattcggaggaaacaccctaaagctgtcgctatatctgcaaaa
tctaaaaaggatttcagagacatgggaagtgagcgtaagtgttcttgacc
ttatgatgatgtatgtcccagaaactcatcgtaagttgtaacgtttgaga
caaaatatatatttactatacctgacctaccaaatgtgaccatttagcag
cacagcgcaatgtggagtcccagttgttcattctcctgaccctgtggctt
cctggaagctgtggcctgatcctgctgcccagcatcgtgagagttatcat
cctgcttatcatcagcctagggaaagatcacacttagacccaattcaatt
cctagttgaatagatattgcctctgtaccattataatgctgaaaaatcac
aaatccgcaatcattcgttggagggagtgcactatctgccaacaaaatgt
tttgtgtctgcggggccatgttatgatactctccctttgaaagccaaaaa
accaaagcagtcggtagattctgaagtgaaggtctgaaagcagctgaggt
atgctcagaattttggatcagggtttgtgagtgaaggggtttttcggttg
gcatttcatttctagtacagcattcacgacatattattggatgcatacaa
tgagatggaactggagctagagtccacttttctggtggagctttgagcct
gagttggagtcccaggagaacagagtgttaagtctacagcagaccagacc
aagcaggtgccttctttctcttcagagcttgttggggtgagacgaagagt
gagtcttagtgctagaaataagtagtacagtgtcacactgctccattgtt
ggtgaagatcactgcgacattagta
gaattctctgatgtcggattagagtggacccttgattaaaagccttcccg
cactctttgcactcaaagagtttcttgccagtatgaacagtctgatgttg
aatcaactgagacctatgaccaaaggtcttcccacattccttacacacat
agggcttctccccagtatggattctgtgatgtaccttgagatgtgagata
cgattgaaggccttgccacactccttacattgataaggcttctccccagt
atggattctctgatgctcaatgagctgggaactccgactgaaggctttag
cacagtccttacacgcataaggtttctcacccgtatgaactctctggtgt
tgtgtgaaatttgagccagagttgaaggccttcccacactccttacattc
atacggcttcttgcctgaatgaatattctcatgctggattagtcgtgagc
catacttaaaagccttcccacactccctacacttgtagggcttctcattt
gtatgaattccttggttaatagtgaattgcttttgacagaaggctctctt
gcattttttatatcgacaggactttttctggtaaaaagtaagagacatgt
ggtgctggtttaatgcgggcatttctttgtgatggattaacactgggccg
gcatttctggctggatttcttggttgtctatcatataggcctttgccttc
ccagtcatctcggagacttgagctctccagactgcagcttggaaggcttt
ctgttatctgtggcgagtcctcctcataagtgtgttgcttggaggatgtt
atcttggtaccacatccagattccaatgctgaaaaagaagagaagcagaa
aacagctatttttcttttttttttccagaaaaagaaatgacagtgaaaac
tggaaaggcactcaagagggccaccaaacaagaagtgtgcgcctcttgct
tgcctgcctttcccctcactgctcagcacttctttgtcaaggtttcccaa
catggtgtctgtgggtcacacacaagtgttccaatggtatcagctggaag
gcagcagcttctgttttgcatgcttcttgggggagaagaatcttttcctt
tccactgttctagtccagcattctgtttggagtcacggtagtcatttcat
tgatttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6257489_6258625
seq2: B6Ng01-293J01.b_46_1170

seq1  GAATTCACACTGGAGAGAAGCCTTACGCATGCAAAATCTGTAAGAAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGAGAGAAGCCTTACGCATGCAAAATCTGTAAGAAGTCC  50

seq1  TTCGCTCAGCGCATTTCCCTCATTCTCCATGAGAGAAGCCATACTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTCAGCGCATTTCCCTCATTCTCCATGAGAGAAGCCATACTGGGGA  100

seq1  GAGACCCTATGAGTGTAATGAATGTGGGAAGGCTTTCAGTAGTGGTTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTATGAGTGTAATGAATGTGGGAAGGCTTTCAGTAGTGGTTCCG  150

seq1  ACCTTATCCGACATCAGAGAAGTCACTCTTCAGAGAAACCATATGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATCCGACATCAGAGAAGTCACTCTTCAGAGAAACCATATGAATGT  200

seq1  AGCAAATGTGGTAAGGCTTATAGTCGGAGCTCATCGCTGATTCGACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGTGGTAAGGCTTATAGTCGGAGCTCATCGCTGATTCGACATCA  250

seq1  GAGTATACATTCGGAGGAAACACCCTAAAGCTGTCGCTATATCTGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACATTCGGAGGAAACACCCTAAAGCTGTCGCTATATCTGCAAAA  300

seq1  TCTAAAAAGGATTTCAGAGACATGGGAAGTGAGCGTAAGTGTTCTTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGGATTTCAGAGACATGGGAAGTGAGCGTAAGTGTTCTTGACC  350

seq1  TTATGATGATGTATGTCCCAGAAACTCATCGTAAGTTGTAACGTTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATGATGTATGTCCCAGAAACTCATCGTAAGTTGTAACGTTTGAGA  400

seq1  CAAAATATATATTTACTATACCTGACCTACCAAATGTGACCATTTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATATTTACTATACCTGACCTACCAAATGTGACCATTTAGCAG  450

seq1  CACAGCGCAATGTGGAGTCCCAGTTGTTCATTCTCCTGACCCTGTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGCAATGTGGAGTCCCAGTTGTTCATTCTCCTGACCCTGTGGCTT  500

seq1  CCTGGAAGCTGTGGCCTGATCCTGCTGCCCAGCATCGTGAGAGTTATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGCTGTGGCCTGATCCTGCTGCCCAGCATCGTGAGAGTTATCAT  550

seq1  CCTGCTTATCATCAGCCTAGGGAAAGATCACACTTAGACCCAATTCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTATCATCAGCCTAGGGAAAGATCACACTTAGACCCAATTCAATT  600

seq1  CCTAGTTGAATAGATATTGCCTCTGTACCATTATAATGCTGAAAAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGAATAGATATTGCCTCTGTACCATTATAATGCTGAAAAATCAC  650

seq1  AAATCCGCAATCATTCGTTGGAGGGAGTGCACTATCTGCCAACAAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGCAATCATTCGTTGGAGGGAGTGCACTATCTGCCAACAAAATGT  700

seq1  TTTGTGTCTGCGGGGCCATGTTATGATACTCTCCCTTTGAAAGCCAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTGCGGGGCCATGTTATGATACTCTCCCTTTGAAAGCCAAAAA  750

seq1  ACCAAAGCAGTCGGTAGATTCTGAAGTGAAGGTCTGAAAGCAGCTGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCAGTCGGTAGATTCTGAAGTGAAGGTCTGAAAGCAGCTGAGGT  800

seq1  ATGCTCAGAATTTTGGATCAGGGTTTGTGAGTGAAGGGGTTTTTCGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGAATTTTGGATCAGGGTTTGTGAGTGAAGGGGTTTTTCGGTTG  850

seq1  GCATTTCATTTCTAGTACAGCATTCAGGACATATTATTGGATGCATACAA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCATTTCATTTCTAGTACAGCATTCACGACATATTATTGGATGCATACAA  900

seq1  TGAGATGGAACTGGAGCTAGAGTCCACTTTTCTGGTGGAGCTTTGAGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGAACTGGAGCTAGAGTCCACTTTTCTGGTGGAGCTTTGAGCCT  950

seq1  GAGTTGAGGTCCCAGGAGAACAGAGTGTTAAGTCTAACAGGCAGACCAGA  1000
      ||||||  ||||||||||||||||||||||||||| ||| ||||||||||
seq2  GAGTTGGAGTCCCAGGAGAACAGAGTGTTAAGTCT-ACA-GCAGACCAGA  998

seq1  CCAAGCAGGGTGCC-TCTTTCTCCTTCAGAGCTTTGTTGGGGTGAGGACG  1049
      ||||||| |||||| ||||||| ||||||||| |||||||||||| ||||
seq2  CCAAGCA-GGTGCCTTCTTTCT-CTTCAGAGC-TTGTTGGGGTGA-GACG  1044

seq1  AAGAGTGAGTCTTTAGGGTGCTAGAAAT-AGTAGTTACAGTGGTCACACT  1098
      |||||||||||||    ||||||||||| ||||| |||||| ||||||||
seq2  AAGAGTGAGTCTT---AGTGCTAGAAATAAGTAG-TACAGT-GTCACACT  1089

seq1  GCCTCCATGGTT-GTGAAGATACACTGCGAACATTTAGTA  1137
      | |||||| ||| |||||||| ||||||| ||| ||||||
seq2  G-CTCCATTGTTGGTGAAGAT-CACTGCG-ACA-TTAGTA  1125

seq1: chr7_6305810_6306916
seq2: B6Ng01-293J01.g_106_1227 (reverse)

seq1  CCCACAAA-CAAAGAAATGACTCCCCGTGCTCCCCAACAGATTGCTTGGC  49
      |||||||| ||| |||||||||  |||||   || |||||| |||| | |
seq2  CCCACAAATCAATGAAATGACT-ACCGTGACTCCAAACAGAATGCTGGAC  49

seq1  TAG-ACAGTGGGAAAGAAGA---TCTTCTCCCCAAGGAGCCAT--ACAAC  93
      ||| ||||||| || ||| |   |||||||||| | ||  |||  | |||
seq2  TAGAACAGTGGAAAGGAAAAGATTCTTCTCCCCCAAGAAGCATGCAAAAC  99

seq1  AG-AGCTGCTGCCTTTCCAGCTGATACCA-TGGGACACTTGTGTGTGACC  141
      || |||||||||| ||||||||||||||| ||| ||||||||||||||||
seq2  AGAAGCTGCTGCC-TTCCAGCTGATACCATTGGAACACTTGTGTGTGACC  148

seq1  CACAGACACCATGTTGGG-AACCCTGACAA--GAGTGCTGAGCAGTGAGG  188
      |||||||||||||||||| |||| ||||||   |||||||||||||||||
seq2  CACAGACACCATGTTGGGAAACCTTGACAAAGAAGTGCTGAGCAGTGAGG  198

seq1  GG-AAGGCAGGCAAGC-AGAGGCGCACACTTCTTG-TTGGTGGCCCTCTT  235
      || ||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  GGAAAGGCAGGCAAGCAAGAGGCGCACACTTCTTGTTTGGTGGCCCTCTT  248

seq1  GAGTGCC-TTCCAGTTTTCACTGTCATTTCTTTTTCTGG-AAAAAAAAAG  283
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTGCCTTTCCAGTTTTCACTGTCATTTCTTTTTCTGGAAAAAAAAAAG  298

seq1  AAAAATAGCTGTTTTCTGCTTCTCTTCTTTTTCAGCATTGGAATCTGGAT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGCTGTTTTCTGCTTCTCTTCTTTTTCAGCATTGGAATCTGGAT  348

seq1  GTGGTACCAAGATAACATCCTCCAAGCAACACACTTATGAGGAGGACTCG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACCAAGATAACATCCTCCAAGCAACACACTTATGAGGAGGACTCG  398

seq1  CCACAGATAACAGAAAGCCTTCCAAGCTGCAGTCTGGAGAGCTCAAGTCT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATAACAGAAAGCCTTCCAAGCTGCAGTCTGGAGAGCTCAAGTCT  448

seq1  CCGAGATGACTGGGAAGGCAAAGGCCTATATGATAGACAACCAAGAAATC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATGACTGGGAAGGCAAAGGCCTATATGATAGACAACCAAGAAATC  498

seq1  CAGCCAGAAATGCCGGCCCAGTGTTAATCCATCACAAAGAAATGCCCGCA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAAATGCCGGCCCAGTGTTAATCCATCACAAAGAAATGCCCGCA  548

seq1  TTAAACCAGCACCACATGTCTCTTACTTTTTACCAGAAAAAGTCCTGTCG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAGCACCACATGTCTCTTACTTTTTACCAGAAAAAGTCCTGTCG  598

seq1  ATATAAAAAATGCAAGAGAGCCTTCTGTCAAAAGCAATTCACTATTAACC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAATGCAAGAGAGCCTTCTGTCAAAAGCAATTCACTATTAACC  648

seq1  AAGGAATTCATACAAATGAGAAGCCCTACAAGTGTAGGGAGTGTGGGAAG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCATACAAATGAGAAGCCCTACAAGTGTAGGGAGTGTGGGAAG  698

seq1  GCTTTTAAGTATGGCTCACGACTAATCCAGCATGAGAATATTCATTCAGG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAAGTATGGCTCACGACTAATCCAGCATGAGAATATTCATTCAGG  748

seq1  CAAGAAGCCGTATGAATGTAAGGAGTGTGGGAAGGCCTTCAACTCTGGCT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCCGTATGAATGTAAGGAGTGTGGGAAGGCCTTCAACTCTGGCT  798

seq1  CAAATTTCACACAACACCAGAGAGTTCATACGGGTGAGAAACCTTATGCG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCACACAACACCAGAGAGTTCATACGGGTGAGAAACCTTATGCG  848

seq1  TGTAAGGACTGTGCTAAAGCCTTCAGTCGGAGTTCCCAGCTCATTGAGCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGACTGTGCTAAAGCCTTCAGTCGGAGTTCCCAGCTCATTGAGCA  898

seq1  TCAGAGAATCCATACTGGGGAGAAGCCTTATCAATGTAAGGAGTGTGGCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATCCATACTGGGGAGAAGCCTTATCAATGTAAGGAGTGTGGCA  948

seq1  AGGCCTTCAATCGTATCTCACATCTCAAGGTACATCACAGAATCCATACT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCAATCGTATCTCACATCTCAAGGTACATCACAGAATCCATACT  998

seq1  GGGGAGAAGCCCTATGTGTGTAAGGAATGTGGGAAGACCTTTGGTCATAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGCCCTATGTGTGTAAGGAATGTGGGAAGACCTTTGGTCATAG  1048

seq1  GTCTCAGTTGATTCAACATCAGACTGTTCATACTGGCAAGAAACTCTTTG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTTGATTCAACATCAGACTGTTCATACTGGCAAGAAACTCTTTG  1098

seq1  AGTGCAAAGAGTGCGGGAAGGCTT  1107
      ||||||||||||||||||||||||
seq2  AGTGCAAAGAGTGCGGGAAGGCTT  1122