BAC Information

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BAC

Clone NameB6Ng01-293J20
Chromosome7 (Build37)
Map Location 135,130,081 - 135,255,174
singlet/doubletdoublet
Overlap genePycard, Trim72, LOC436010, EG668675, Itgam
Upstream geneMvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus
Downstream geneItgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293J20.bB6Ng01-293J20.g
ACCGA089952GA089953
length5461,081
definitionB6Ng01-293J20.b B6Ng01-293J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,254,623 - 135,255,174)(135,130,081 - 135,131,142)
sequence
ctatgtagattgcatgatcccttctccctactgttctctagcctctaaaa
caaactggcttttctgacccctggaccaataagaatgaaactagaaaaat
atcttttctcctttcctgtttctcaccaggtcagccactgctattctccc
acaatagcataatcctactctctaagaacatggacagggaaagaaggcag
accattggcaacagaaaacgtatttaacttgatcaactcaacctcccaaa
tcagttctccctcacttgaaaatgaactgtttgaaaatgcatgaaacagg
agaatattgtcttaagcaagctgaggcaggctcaatgataaacaccaagt
gttctatgtggacttctactttctaatgggatctcacttctgatgggagt
gagtgtatgtagaagacaaaacattagcgaggggagcatgggagggtaat
ggaggcattaagagacaggagcgcggagggcaatggaacctatgtgatac
ggaagtgcagagagaactgcggggttgggggaatggtgtggaagga
gaattcagatcatctggaagagcagcaagtgctcttaactgttgagtaat
ctctccagcaccgaatctgctccccccgcctcccccccccccccccccag
acaagggtcttagcccaggctgttcctgaacttactagttctgggaatga
cctggagaaccagtgattagaacttgtctggcctctgtacagcgctgtgc
atacatcaatatttgtataccacatacaaattacctgctggggatagtgg
ttcatgtctgtaatcacagcacatactttataaggctcaaacttagaatt
gttggtgttttagttcacaaagctttgtgagtactgcaacaatcaggtat
ttgacattattattttttggtttgtgtttcgagacagggtttctctgtgt
agcgctggctgtcctggaactcactctgttagaccaggctggcctcgaac
tcagaattctgcctgcctctgcctcccaagtgctgggattaaaggcactt
tctctttctctctctctctctctctctctctctctctctctccctctctc
aaagatttatttattaactttatgtatatgaatacactgtagctgtctca
gacacaccagaagagggcatcggatcccattacagatggttgtgagccac
catgtggtttgctggggatttgaactcaggacctctggaaggggcagtca
gtgctctttaaccactgagccagaaaatccacctgcctctgcctcccaag
ggctggggattaaaggcgtgcatcaccactgccccggcggtatttgacat
tattttgaatattccatttttctttgatatttggccagaaatgaatatgg
ctatgaatctgacatgttttgagcttttggagacaaggtgtgctggcaga
atcccattctcttttggttatcaaaagccaaagcaggaagacaagttgag
gcctttggtggtgttggcccaaagacaataaataaacccccaataacagg
ttggcagaattgaccctgcgtccggttttttggttattgactggcctacc
aactgtaaggctttggggaaaataaattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135254623_135255174
seq2: B6Ng01-293J20.b_48_599 (reverse)

seq1  TCCTTCCACACCATTCCCCCAACCCCGCAGTTCTCTCTGCACTTCCGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCACACCATTCCCCCAACCCCGCAGTTCTCTCTGCACTTCCGTAT  50

seq1  CACATAGGTTCCATTGCCCTCCGCGCTCCTGTCTCTTAATGCCTCCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGTTCCATTGCCCTCCGCGCTCCTGTCTCTTAATGCCTCCATTA  100

seq1  CCCTCCCATGCTCCCCTCGCTAATGTTTTGTCTTCTACATACACTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCATGCTCCCCTCGCTAATGTTTTGTCTTCTACATACACTCACTC  150

seq1  CCATCAGAAGTGAGATCCCATTAGAAAGTAGAAGTCCACATAGAACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAAGTGAGATCCCATTAGAAAGTAGAAGTCCACATAGAACACTT  200

seq1  GGTGTTTATCATTGAGCCTGCCTCAGCTTGCTTAAGACAATATTCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTATCATTGAGCCTGCCTCAGCTTGCTTAAGACAATATTCTCCTG  250

seq1  TTTCATGCATTTTCAAACAGTTCATTTTCAAGTGAGGGAGAACTGATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCATTTTCAAACAGTTCATTTTCAAGTGAGGGAGAACTGATTTG  300

seq1  GGAGGTTGAGTTGATCAAGTTAAATACGTTTTCTGTTGCCAATGGTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGAGTTGATCAAGTTAAATACGTTTTCTGTTGCCAATGGTCTGC  350

seq1  CTTCTTTCCCTGTCCATGTTCTTAGAGAGTAGGATTATGCTATTGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCCTGTCCATGTTCTTAGAGAGTAGGATTATGCTATTGTGGGA  400

seq1  GAATAGCAGTGGCTGACCTGGTGAGAAACAGGAAAGGAGAAAAGATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAGTGGCTGACCTGGTGAGAAACAGGAAAGGAGAAAAGATATTT  450

seq1  TTCTAGTTTCATTCTTATTGGTCCAGGGGTCAGAAAAGCCAGTTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTTCATTCTTATTGGTCCAGGGGTCAGAAAAGCCAGTTTGTTTT  500

seq1  AGAGGCTAGAGAACAGTAGGGAGAAGGGATCATGCAATCTACATAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTAGAGAACAGTAGGGAGAAGGGATCATGCAATCTACATAGGAAT  550

seq1  TC  552
      ||
seq2  TC  552

seq1: chr7_135130081_135131142
seq2: B6Ng01-293J20.g_65_1145

seq1  GAATTCAGATCATCTGGAAGAGCAGCAAGTGCTCTTAACTGTTGAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCATCTGGAAGAGCAGCAAGTGCTCTTAACTGTTGAGTAAT  50

seq1  CTCTCCAGCACCGAATCTGCTCCCCCCGCCTCCCCCCCCCCCCCCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCACCGAATCTGCTCCCCCCGCCTCCCCCCCCCCCCCCCCCAG  100

seq1  ACAAGGGTCTTAGCCCAGGCTGTTCCTGAACTTACTAGTTCTGGGAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTCTTAGCCCAGGCTGTTCCTGAACTTACTAGTTCTGGGAATGA  150

seq1  CCTGGAGAACCAGTGATTAGAACTTGTCTGGCCTCTGTACAGCGCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAACCAGTGATTAGAACTTGTCTGGCCTCTGTACAGCGCTGTGC  200

seq1  ATACATCAATATTTGTATACCACATACAAATTACCTGCTGGGGATAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAATATTTGTATACCACATACAAATTACCTGCTGGGGATAGTGG  250

seq1  TTCATGTCTGTAATCACAGCACATACTTTATAAGGCTCAAACTTAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTGTAATCACAGCACATACTTTATAAGGCTCAAACTTAGAATT  300

seq1  GTTGGTGTTTTAGTTCACAAAGCTTTGTGAGTACTGCAACAATCAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTTTTAGTTCACAAAGCTTTGTGAGTACTGCAACAATCAGGTAT  350

seq1  TTGACATTATTATTTTTTGGTTTGTGTTTCGAGACAGGGTTTCTCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTATTATTTTTTGGTTTGTGTTTCGAGACAGGGTTTCTCTGTGT  400

seq1  AGCGCTGGCTGTCCTGGAACTCACTCTGTTAGACCAGGCTGGCCTCGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGGCTGTCCTGGAACTCACTCTGTTAGACCAGGCTGGCCTCGAAC  450

seq1  TCAGAATTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACTT  500

seq1  TCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTC  550

seq1  AAAGATTTATTTATTAACTTTATGTATATGAATACACTGTAGCTGTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTAACTTTATGTATATGAATACACTGTAGCTGTCTCA  600

seq1  GACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCAC  650

seq1  CATGTGG-TTGCT-GGGATTTGAACTCAGGACCTCTGGAA-GGGCAGTCA  697
      ||||||| ||||| |||||||||||||||||||||||||| |||||||||
seq2  CATGTGGTTTGCTGGGGATTTGAACTCAGGACCTCTGGAAGGGGCAGTCA  700

seq1  GTGCTC-TTAACCACTGAGCCAG-AAATCCACCTGCCTCTGCCTCCCAAG  745
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGCTCTTTAACCACTGAGCCAGAAAATCCACCTGCCTCTGCCTCCCAAG  750

seq1  GGCT-GGGATTAAAGGCGTGCATCACCACTG-CCCGGCGGTATTTGACAT  793
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTGGGGATTAAAGGCGTGCATCACCACTGCCCCGGCGGTATTTGACAT  800

seq1  TATTTTGTATATTCCA-TTTTCTTTGATATTTGCCCAGAAGTG-ATAATG  841
      ||||||| |||||||| |||||||||||||||| |||||| || |||  |
seq2  TATTTTGAATATTCCATTTTTCTTTGATATTTGGCCAGAAATGAATATGG  850

seq1  CTATGATACTGACATGTATTGAGCTTTTGGAGACAAGGTGTGCTGGCAGA  891
      ||||||  ||||||||| ||||||||||||||||||||||||||||||||
seq2  CTATGAATCTGACATGTTTTGAGCTTTTGGAGACAAGGTGTGCTGGCAGA  900

seq1  TGCCCATCATCTCTTGGTATTCAGAAGCCAAAGCAGGAAGACAAAGTTGA  941
        |||||  ||| |||||  ||| |||||||||||||||||| |||||||
seq2  ATCCCATTCTCTTTTGGTTATCAAAAGCCAAAGCAGGAAGAC-AAGTTGA  949

seq1  GGCCTTT-GTGGTGTTGGCCTAAAGATAATAGAATAATCCCCAATAGCA-  989
      ||||||| |||||||||||| ||||| |||| |  || |||||||| || 
seq2  GGCCTTTGGTGGTGTTGGCCCAAAGACAATAAATAAACCCCCAATAACAG  999

seq1  GTTAGCAGATTTGA-CCTGTG-CCTGTTTTTTGTTTA-TGA-TGG-CTAG  1034
      ||| ||||| |||| |||| | || |||||||| ||| ||| ||| ||| 
seq2  GTTGGCAGAATTGACCCTGCGTCCGGTTTTTTGGTTATTGACTGGCCTAC  1049

seq1  CAA-TGTAAGGCTTTGGG--AAAT-AATTGAA  1062
      ||| ||||||||||||||  |||| |||||||
seq2  CAACTGTAAGGCTTTGGGGAAAATAAATTGAA  1081