BAC Information

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BAC

Clone NameB6Ng01-293N18
Chromosome7 (Build37)
Map Location 97,416,767 - 97,606,252
singlet/doubletdoublet
Overlap geneSytl2, Ccdc89, Crebzf, Tmem126a
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83
Downstream geneTmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293N18.bB6Ng01-293N18.g
ACCGA090136GA090137
length1,150963
definitionB6Ng01-293N18.b B6Ng01-293N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,605,110 - 97,606,252)(97,416,767 - 97,417,351)
sequence
gaattcacagaaatccccctgcctcaggctactgaattctgggattaagg
cgtacgttatcacgtgcggctcccttacttttgaaccgttagtttttcac
tacattccgttaaccctgtttcacagaagcagtgttctagaggacatggg
gaatgctgaggaaaacaaaacaaaacaaaaaaaaagcactcgctctggaa
ttgctcacgttctgctggaagtcacccacagcataacatggcacaaagat
ccaagagcgagatggagcaaaaagtcaatctcaggctaacttcactgcca
acgttgccttcatcagcccgtagcctagcggctgccatgcaacctacgcc
aggatcggggactcggaagtcgggctgcgtgcccaggcggggtggtgtcg
agcccagccaccgccacaccgctgtttctgcaggctgtacccgggatggg
ctatagcggactcgccagtcctcaccgctagtccacagtttagcgtctcc
tggaccggaagcccgtggacaggaaacagaggcggagacagagtcacgtg
tgagccaaagatggagctcagacgaccctagcgaaggttgcggtagactc
ggcgcgggaggacccgggcaagcaccggcggctggggaggctgccattag
ctgccttcattctgccgaatggtgagtagctgtgccaatgtcgcgctggg
agaggcgcggggtggccacgagggtggggaacgctgtgtgtgctgacccg
gtcttcactttccacccgtgagggggaagacctggctgaattgattgagt
tgaagaatcactgccaatttacaaattgctacgtttaattttccgatgct
tggtttttatgcagaaacttttcagagattctttttagtatttcaaggtg
tctttgttctttgatggggattttattaactgagaaataatatccaggaa
gaatgaaaacaggacttgaatcctgggatcctgatctaaatcgctaaatt
ctgtattttactttcgaggttaattttaagtcaggattttattggaattt
tgcacattgcagcatttcaaatcaattgtatatatacaacaggtacctag
attgtaagacattggttccatgctgtcaaggcttacctaatacgaatggt

gaattctaacccccaatttggacagatactccctattgaatcagaagtca
tgctggccaacagaaatctggggcacaaagaccagaagaccaaagaggaa
aaagaaaactaaacaggaagaaaacatccaacaaagataaactcagaaat
cagcacctagacctatactcatccccaaaccagacgtctaaacaccagtg
taagaacacaacagccagtgtatggcaccaccagagcccagctgtcctat
gacaacaagacctgactatttcaacacagctgaaacacaagaaaatgacc
tcaagaccaactttatgaagttgatagaggttctttaaaaggaaatgcaa
aaacaaaaacaaaacaaaaacaaaaacaaaacccccaaaaaacaaactcc
taaagaaatcgaggaaaagacaaacaaaaaaattggagaaaaatcagtat
atcccataaagaaggccaagaagaaacaacaaatgaaagaaactgtgcaa
gtcccgactactgaaacagaagcaataaagaaaacacaaactgagggaat
tgtggaaatggaaaatctaggtaagtgagcaagatctacagacgcaaaca
tcaccaacaaactacaagatatagaagagagaatctcagggttaaagaca
ggttagaagaaactcattcaccagaaagaaaatgttaaatctaaaatgtt
gctgacacaaatcatccatagaatctggaacactgaaaagactaaaccta
agaatcatagaaatagaagaagattcctggatcaaaagcccagaaaatat
atttaactaaatcacagaagaataatttccctacctaaacaaggacatgc
ttacagaacaccaaatggattgggatggaccagaaaaagaaaatcccttt
gccacatactgatcaaaacgctaaacatgaagatcaaattataaatatta
aaagctgcatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_97605110_97606252
seq2: B6Ng01-293N18.b_50_1199 (reverse)

seq1  ACCATTCGTATTA-GTTAGCTGTGACAGCACTGGAA-CAATGTCTTACCA  48
      ||||||||||||| || |||  |||||||| ||||| |||||||||||  
seq2  ACCATTCGTATTAGGTAAGCCTTGACAGCA-TGGAACCAATGTCTTAC--  47

seq1  AATCTTGGGTACCTGTTGTATATATACAA-TGATTTGGAAAATGCTGC-A  96
      |||| | |||||||||||||||||||||| |||||||  ||||||||| |
seq2  AATC-TAGGTACCTGTTGTATATATACAATTGATTTG--AAATGCTGCAA  94

seq1  TGTGCAAAATTCCA--TAAATCTTGACTTAAAAATTAACCTCGAAAGTAA  144
      ||||||||||||||   ||||| |||||| ||||||||||||||||||||
seq2  TGTGCAAAATTCCAATAAAATCCTGACTT-AAAATTAACCTCGAAAGTAA  143

seq1  AATACAG-ATTTAGCGGTTTAGATCAGGATCCCAGGATTCAAGTCCTGTT  193
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AATACAGAATTTAGCGATTTAGATCAGGATCCCAGGATTCAAGTCCTGTT  193

seq1  T--CTTCTTCCTGG-TATTATTTCTCAGTTAAT-AAATCCCCATCAAAG-  238
      |   |||||||||| |||||||||||||||||| ||||||||||||||| 
seq2  TTCATTCTTCCTGGATATTATTTCTCAGTTAATAAAATCCCCATCAAAGA  243

seq1  ACAAAGACACCTTGAAATACTACAAAG-ATCTCTG-AAAGTTTCTGCATA  286
      |||||||||||||||||||||| |||| ||||||| ||||||||||||||
seq2  ACAAAGACACCTTGAAATACTAAAAAGAATCTCTGAAAAGTTTCTGCATA  293

seq1  AAAACCAAGCATCGGAAAATTAAACGTAGCAATTTGTAAATTGGCAGTGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGCATCGGAAAATTAAACGTAGCAATTTGTAAATTGGCAGTGA  343

seq1  TTCTTCAACTCAATCAATTCAGCCAGGTCTTCCCCCTCACGGGTGGAAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAACTCAATCAATTCAGCCAGGTCTTCCCCCTCACGGGTGGAAAG  393

seq1  TGAAGACCGGGTCAGCACACACAGCGTTCCCCACCCTCGTGGCCACCCCG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCGGGTCAGCACACACAGCGTTCCCCACCCTCGTGGCCACCCCG  443

seq1  CGCCTCTCCCAGCGCGACATTGGCACAGCTACTCACCATTCGGCAGAATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTCCCAGCGCGACATTGGCACAGCTACTCACCATTCGGCAGAATG  493

seq1  AAGGCAGCTAATGGCAGCCTCCCCAGCCGCCGGTGCTTGCCCGGGTCCTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTAATGGCAGCCTCCCCAGCCGCCGGTGCTTGCCCGGGTCCTC  543

seq1  CCGCGCCGAGTCTACCGCAACCTTCGCTAGGGTCGTCTGAGCTCCATCTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCGAGTCTACCGCAACCTTCGCTAGGGTCGTCTGAGCTCCATCTT  593

seq1  TGGCTCACACGTGACTCTGTCTCCGCCTCTGTTTCCTGTCCACGGGCTTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACACGTGACTCTGTCTCCGCCTCTGTTTCCTGTCCACGGGCTTC  643

seq1  CGGTCCAGGAGACGCTAAACTGTGGACTAGCGGTGAGGACTGGCGAGTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCAGGAGACGCTAAACTGTGGACTAGCGGTGAGGACTGGCGAGTCC  693

seq1  GCTATAGCCCATCCCGGGTACAGCCTGCAGAAACAGCGGTGTGGCGGTGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCCCATCCCGGGTACAGCCTGCAGAAACAGCGGTGTGGCGGTGG  743

seq1  CTGGGCTCGACACCACCCCGCCTGGGCACGCAGCCCGACTTCCGAGTCCC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCGACACCACCCCGCCTGGGCACGCAGCCCGACTTCCGAGTCCC  793

seq1  CGATCCTGGCGTAGGTTGCATGGCAGCCGCTAGGCTACGGGCTGATGAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTGGCGTAGGTTGCATGGCAGCCGCTAGGCTACGGGCTGATGAAG  843

seq1  GCAACGTTGGCAGTGAAGTTAGCCTGAGATTGACTTTTTGCTCCATCTCG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGTTGGCAGTGAAGTTAGCCTGAGATTGACTTTTTGCTCCATCTCG  893

seq1  CTCTTGGATCTTTGTGCCATGTTATGCTGTGGGTGACTTCCAGCAGAACG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGATCTTTGTGCCATGTTATGCTGTGGGTGACTTCCAGCAGAACG  943

seq1  TGAGCAATTCCAGAGCGAGTGCTTTTTTTTTGTTTTGTTTTGTTTTCCTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATTCCAGAGCGAGTGCTTTTTTTTTGTTTTGTTTTGTTTTCCTC  993

seq1  AGCATTCCCCATGTCCTCTAGAACACTGCTTCTGTGAAACAGGGTTAACG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCCCATGTCCTCTAGAACACTGCTTCTGTGAAACAGGGTTAACG  1043

seq1  GAATGTAGTGAAAAACTAACGGTTCAAAAGTAAGGGAGCCGCACGTGATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGTGAAAAACTAACGGTTCAAAAGTAAGGGAGCCGCACGTGATA  1093

seq1  ACGTACGCCTTAATCCCAGAATTCAGTAGCCTGAGGCAGGGGGATTTCTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACGCCTTAATCCCAGAATTCAGTAGCCTGAGGCAGGGGGATTTCTG  1143

seq1  TGAATTC  1143
      |||||||
seq2  TGAATTC  1150

seq1: chr7_97416767_97417351
seq2: B6Ng01-293N18.g_69_653

seq1  GAATTCTAACCCCCAATTTGGACAGATACTCCCTATTGAATCAGAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCCCCAATTTGGACAGATACTCCCTATTGAATCAGAAGTCA  50

seq1  TGCTGGCCAACAGAAATCTGGGGCACAAAGACCAGAAGACCAAAGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCAACAGAAATCTGGGGCACAAAGACCAGAAGACCAAAGAGGAA  100

seq1  AAAGAAAACTAAACAGGAAGAAAACATCCAACAAAGATAAACTCAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACTAAACAGGAAGAAAACATCCAACAAAGATAAACTCAGAAAT  150

seq1  CAGCACCTAGACCTATACTCATCCCCAAACCAGACGTCTAAACACCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTAGACCTATACTCATCCCCAAACCAGACGTCTAAACACCAGTG  200

seq1  TAAGAACACAACAGCCAGTGTATGGCACCACCAGAGCCCAGCTGTCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACACAACAGCCAGTGTATGGCACCACCAGAGCCCAGCTGTCCTAT  250

seq1  GACAACAAGACCTGACTATTTCAACACAGCTGAAACACAAGAAAATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAAGACCTGACTATTTCAACACAGCTGAAACACAAGAAAATGACC  300

seq1  TCAAGACCAACTTTATGAAGTTGATAGAGGTTCTTTAAAAGGAAATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCAACTTTATGAAGTTGATAGAGGTTCTTTAAAAGGAAATGCAA  350

seq1  AAACAAAAACAAAACAAAAACAAAAACAAAACCCCCAAAAAACAAACTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAAACAAAAACAAAAACAAAACCCCCAAAAAACAAACTCC  400

seq1  TAAAGAAATCGAGGAAAAGACAAACAAAAAAATTGGAGAAAAATCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATCGAGGAAAAGACAAACAAAAAAATTGGAGAAAAATCAGTAT  450

seq1  ATCCCATAAAGAAGGCCAAGAAGAAACAACAAATGAAAGAAACTGTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATAAAGAAGGCCAAGAAGAAACAACAAATGAAAGAAACTGTGCAA  500

seq1  GTCCCGACTACTGAAACAGAAGCAATAAAGAAAACACAAACTGAGGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGACTACTGAAACAGAAGCAATAAAGAAAACACAAACTGAGGGAAT  550

seq1  TGTGGAAATGGAAAATCTAGGTAAGTGAGCAAGAT  585
      |||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATGGAAAATCTAGGTAAGTGAGCAAGAT  585