BAC Information

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BAC

Clone NameB6Ng01-295G05
Chromosome7 (Build37)
Map Location 10,264,515 - 10,414,272
singlet/doubletdoublet
Overlap geneLOC100042139, LOC100042894, Vmn2r47
Upstream geneLOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126
Downstream gene2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295G05.bB6Ng01-295G05.g
ACCGA091264GA091265
length8061,163
definitionB6Ng01-295G05.b B6Ng01-295G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,413,145 - 10,414,272)(10,264,515 - 10,265,664)
sequence
gaattcacagattagcaatgaaaatgtttggttttatacagagcaaacaa
atatctattagcatgccccttctaatattggatataaaaagtctttcctc
attaaatttctccatgattagaagatgagtttttatttatatttgtcaat
tatatggaaatcatttggaggaattattttcattagtgtaatccagtgat
tctgcaaagagtgtaggctctggagaacattctgggttttctgagagtaa
ctaaacaagaaatagtgttggtattcatttctgtctgtagaaatatgttt
atatgtgtgaatgtatgcttctcactgagtatatgtatattttctactct
ttctgtgtatctgcatttatatttgtgttactttcaacatatatgtttat
ctctctgtatgaaagtggaattgagcaacaattatttctatgtaggaatt
tctttctataagtgtttgtttatatatgtgtgtatgtttctttggggttt
tgacagagtaggtttcattgtgtacaatgtatgtattttataagtgttta
taagtacttatatggatttgtacctgctttactatgtatgtgtctgccta
tttctttgtacttggcaaggcctttgccttcctttttgtctttaggtgtg
aatataaaactctctgtgtgtcaatattattcatggctgttccttatata
tttataccactccccgtgttttgctgtcagcctccctccctctctctctc
tctctctctctctctctctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtg
tgtgtg
gaattcattccctatgacacattgagactctgacttctactgggaaaaga
tgtataatagctactggagaatttactagctcaaacttgttgacacagaa
acaacacagaattgaacaggtaggctgtatgtatatatacatacttatat
gtgtgagttcatgtgaaggtagatattgcattattgtatttaagtgattc
ctgtcataagtcataggaagaaggtggaatatgagaggaaatataatgtt
tatatttgaatagtagaaaatattaatgaaataagccctaagatgtttcc
tcatctggcaatcattaatcaaaagttctggttattgttcatgatgtgca
ctaattttagcactgaaggaaaaatatctctgtagatactttgtactaaa
aaatccttcaccttgattccttcttcatatggaaagctgagcactttaat
ccttgcctcacctccatttgtatgagaatcaaggatgaaatcagtgctga
gaaacagaatgagcaaaatcacagaggaatcctctggaaagggtggtaac
ccagatggtttgtgttaagcaattatactccattctaaaattgtaatccc
caactgggtaacaacatgaacagtgattgtaattgcacttaatttacaag
tcatttcagagaatgttgatgtgctttcttggttttcagaattcttatct
tcaacaatgcatttgtggacagatattatttgataagttgcctaagagcc
taagaagttggattagctataaatagaatatgttgctctaccagagaacc
tgagttcagatcacagtacccatgacagatatctcacaagtaaatataaa
tttaatgacagtagtattatttgctcatatgtgcatgtgtatatgtgtta
tccactccacacacttaagcaaataatgcaacaaaatattttatggaatt
tttgtattttaattttgtttgtacgaaattaattttttttacgtctaata
acaatttttgttacacttttaaatttgtttcaagtacagtatatgttaaa
atggatgacttcaaaaagaacaacttagtagattgccttggcttttacct
ccatggcatcatgggtaataaacctcaacctgtaggcttagcactaataa
tttactggtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10413145_10414272
seq2: B6Ng01-295G05.b_49_849 (reverse)

seq1  ACACACACACACACACACACACACACAAACACACACACACACACACACAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACACACACCAAACACACGCACACAAACACACGAATATACACACAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACCTAGAGTGGCTCACATCTTTTCCATGTCACACATATAATACATCTAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTCATTTACAAACAAATATACGTACATGTTGACACACATATGTAAAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCATTCACATAAGTGACAATCATATCCACTCAAATAAAAAGACAGATA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAATCACACAAAATAATACACTGGCACACATACAACTACACATACAGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CATACAGACATACACACACACACTCACACAAACACACACACACACACACA  350
                                 ||| |||||||||||||||||||
seq2  ---------------------------ACACACACACACACACACACACA  23

seq1  CACAAACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGA  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACAAACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGA  73

seq1  GGCTGACAGCAAAACACGGGGAGTGGTATAAATATATAAGGAACAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAGCAAAACACGGGGAGTGGTATAAATATATAAGGAACAGCCAT  123

seq1  GAATAATATTGACACACAGAGAGTTTTATATTCACACCTAAAGACAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTGACACACAGAGAGTTTTATATTCACACCTAAAGACAAAAA  173

seq1  GGAAGGCAAAGGCCTTGCCAAGTACAAAGAAATAGGCAGACACATACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAAAGGCCTTGCCAAGTACAAAGAAATAGGCAGACACATACATA  223

seq1  GTAAAGCAGGTACAAATCCATATAAGTACTTATAAACACTTACAAAATAC  600
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTAAAGCAGGTACAAATCCATATAAGTACTTATAAACACTTATAAAATAC  273

seq1  ATACATTGTACACAATGAAACCTACTCTATCAAAACCCCAAAGAAACATA  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATACATTGTACACAATGAAACCTACTCTGTCAAAACCCCAAAGAAACATA  323

seq1  CACACATATATAAACAAACACTTATAGAAAGAAATTCCTACATAGAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATAAACAAACACTTATAGAAAGAAATTCCTACATAGAAATA  373

seq1  ATTGTTGCTCAATTCCACTTTCATACAGAGAGATAAACATATATGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTCAATTCCACTTTCATACAGAGAGATAAACATATATGTTGAA  423

seq1  AGTAACACAAATATGAATGCAGATACACAGAAAGAGTAGAAAATATACAT  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTAACACAAATATAAATGCAGATACACAGAAAGAGTAGAAAATATACAT  473

seq1  ATACTCAGTGAGAAGCATACATTCACACATATAAACATATTTCTACAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGTGAGAAGCATACATTCACACATATAAACATATTTCTACAGAC  523

seq1  AGAAATGAATACCAACACTATTTCTTGTTTAGTTACTCTCAGAAAACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAATACCAACACTATTTCTTGTTTAGTTACTCTCAGAAAACCCA  573

seq1  GAATGTTCTCCAGAGCCTACACTCTTTGCAGAATCACTGGATTACACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTCCAGAGCCTACACTCTTTGCAGAATCACTGGATTACACTAA  623

seq1  TGAAAATAATTCCTCCAAATGATTTCCATATAATTGACAAATATAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAATTCCTCCAAATGATTTCCATATAATTGACAAATATAAATAA  673

seq1  AAACTCATCTTCTAATCATGGAGAAATTTAATGAGGAAAGACTTTTTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATCTTCTAATCATGGAGAAATTTAATGAGGAAAGACTTTTTATA  723

seq1  TCCAATATTAGAAGGGGCATGCTAATAGATATTTGTTTGCTCTGTATAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTAGAAGGGGCATGCTAATAGATATTTGTTTGCTCTGTATAAA  773

seq1  ACCAAACATTTTCATTGCTAATCTGTGA  1128
      ||||||||||||||||||||||||||||
seq2  ACCAAACATTTTCATTGCTAATCTGTGA  801

seq1: chr7_10264515_10265664
seq2: B6Ng01-295G05.g_68_1230

seq1  GAATTCATTCCCTATGACACATTGAGACTCTGACTTCTACTGGGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCTATGACACATTGAGACTCTGACTTCTACTGGGAAAAGA  50

seq1  TGTATAATAGCTACTGGAGAATTTACTAGCTCAAACTTGTTGACACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATAGCTACTGGAGAATTTACTAGCTCAAACTTGTTGACACAGAA  100

seq1  ACAACACAGAATTGAACAGGTAGGCTGTATGTATATATACATAATTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAACACAGAATTGAACAGGTAGGCTGTATGTATATATACATACTTATAT  150

seq1  GTGTGAGTTCATGTGAAGGTAGATATTGCATTATTGTATTTAAGTGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTTCATGTGAAGGTAGATATTGCATTATTGTATTTAAGTGATTC  200

seq1  CTGTCATAAGTCATAGGAAGAAGGTGGAATATGAGAGGAAATATAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAAGTCATAGGAAGAAGGTGGAATATGAGAGGAAATATAATGTT  250

seq1  TATATTTGAATAGTAGAAAATATTAATGAAATAAGCCCTAAGATGTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGAATAGTAGAAAATATTAATGAAATAAGCCCTAAGATGTTTCC  300

seq1  TCATCTGGCAATCATTAATCAAAAGTTCTGGTTATTGTTCATGATGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGCAATCATTAATCAAAAGTTCTGGTTATTGTTCATGATGTGCA  350

seq1  CTAATTTTAGCACTGAAGGAAAAATATCTCTGTAGATACTTTGTACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAGCACTGAAGGAAAAATATCTCTGTAGATACTTTGTACTAAA  400

seq1  AAATCCTTCACCTTGATTCCTTCTTCATATGGAAAGCTGAGCACTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCACCTTGATTCCTTCTTCATATGGAAAGCTGAGCACTTTAAT  450

seq1  CCTTGCCTCACCTCCATTTGTATGAGAATCAAGGATGAAATCAGTGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTCACCTCCATTTGTATGAGAATCAAGGATGAAATCAGTGCTGA  500

seq1  GAAACAGAATGAGCAAAATCACAGAGGAATCCTCTGGAAAGGGTGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAATGAGCAAAATCACAGAGGAATCCTCTGGAAAGGGTGGTAAC  550

seq1  CCAGATGGTTTGTGTTAAGCAATTATACTCCATTCTAAAATTGTAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGTTTGTGTTAAGCAATTATACTCCATTCTAAAATTGTAATCCC  600

seq1  CAACTGGGTAACAACATGAACAGTGATTGTAATTGCACTTAATTTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGTAACAACATGAACAGTGATTGTAATTGCACTTAATTTACAAG  650

seq1  TCATTTCAGAGAATGTTGATGTGCTTTCTTGGTTTTCAGAATTCTTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGAGAATGTTGATGTGCTTTCTTGGTTTTCAGAATTCTTATCT  700

seq1  TCAACAATGCATTTGTGGACAGATATTATTTGATAAGTTGCCTAAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATGCATTTGTGGACAGATATTATTTGATAAGTTGCCTAAGAGCC  750

seq1  TAAGAAGTTGGATTAGCTATAAATAGAATATGTTGCTCTACCAGAGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTGGATTAGCTATAAATAGAATATGTTGCTCTACCAGAGAACC  800

seq1  TGAGTTCAGATCACAGTACCCATGACAGATATCTCACAAGTAAATATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAGATCACAGTACCCATGACAGATATCTCACAAGTAAATATAAA  850

seq1  TTTAATGACAGTAGTATTATTTGCTCATATGTGCATGTGTATATGTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGACAGTAGTATTATTTGCTCATATGTGCATGTGTATATGTGTTA  900

seq1  TCCACTCCACACACTTAAGCAAATAATGCAACAAAATATTTTATGGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCACACACTTAAGCAAATAATGCAACAAAATATTTTATGGAATT  950

seq1  TTTGTA-TTTAATTTTG-TTGTACG-AATTAA-TTTTTTTACGTCTAAT-  995
      |||||| |||||||||| ||||||| |||||| |||||||||||||||| 
seq2  TTTGTATTTTAATTTTGTTTGTACGAAATTAATTTTTTTTACGTCTAATA  1000

seq1  ACAATTTT--GTACAC-TTTAAATTTGTTTTCAAGTACAGTATATGTTAA  1042
      ||||||||   ||||| |||||||||| ||||||||||||||||||||||
seq2  ACAATTTTTGTTACACTTTTAAATTTG-TTTCAAGTACAGTATATGTTAA  1049

seq1  AATGTATGACTTCAAAA--GACAACTTAGTAGATTG-CTTGG-TTTTA-C  1087
      |||| ||||||||||||   |||||||||||||||| ||||| ||||| |
seq2  AATGGATGACTTCAAAAAGAACAACTTAGTAGATTGCCTTGGCTTTTACC  1099

seq1  TCCAT-GCATCATGGG-AATAAA-CTCAAACTGTAAGCCTTAGCAACAAA  1134
      ||||| |||||||||| |||||| ||||| |||| || |||||| || ||
seq2  TCCATGGCATCATGGGTAATAAACCTCAACCTGT-AGGCTTAGC-ACTAA  1147

seq1  TAATTTAACTGTTTAA  1150
      |||||||   ||||||
seq2  TAATTTACTGGTTTAA  1163