BAC Information

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BAC

Clone NameB6Ng01-295I08
Chromosome2 (Build37)7 (Build37)
Map Location 165,005,527 - 165,005,653127,342,619 - 127,343,704
singlet/doubletsingletsinglet
Overlap geneCdh22
Upstream geneWfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295I08.bB6Ng01-295I08.g
ACCGA091364GA091365
length6401,086
definitionB6Ng01-295I08.b B6Ng01-295I08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(165,005,527 - 165,005,653)(127,342,619 - 127,343,704)
sequence
gaattctcaattctgaacatctatgctccaaatgcaagggcacccacatt
cataaaagaaactttactaaagctcaaagcatacatcacaaaccacacaa
taatagtgagagactttaacaccccactctcagcaaatggacagatcatg
gaaacagaaactaaacagagacacagtgaaactaacagaagttatgaacc
aaatggatctaacagatatttttagaacatttcatcctaaagcaaaagaa
tatatcttcttctcagcatttcacagtacgttctccaaaactgaccatat
aattggtcacaaaacagacctcaacagatacaagaagattgaaataatcc
cttgcatcctatcaaatcaccatggactaaggttggtcttaaataccaat
aaaaacaatggagagcacacatatacatggaagctgaacaatgctctatt
cagtgataacttggtcaaggaagaaataaagaaaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaggaaggaaggaaggaaggaaggaaggaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
gaaagaaagaaagaaagaaaggaaggaaggaaggaaggaa
gaattccctaagaaatccagctgtccattaccccactagagatgagggtc
tagctcttcttaccctgtgctcatccacagcagtaacagctatgctgcct
acaaccattagtcctagactggatacaccgttggcttagactgaagaggt
ttgacgcccagccttgcttcttgagcatcggcctttcatactagatggtg
gggctctgggactttgccgagtgctctgttgctacaggactcagcttctc
ccctgtaaaattagaattatgataacactcgccttttgagtcccagccga
gatgagtaaagggcttgacaaatgctcaatcctccctggacatcagaacc
tcctaggagccttggaagccaaggataatttaattcctacctagggattc
cattttcttggttttccttgtgcccatataagttcgaagaccactgaacg
acaaaccccaagccagagagtcagcctgagtcattctcaagttggcatct
ggggacaatgtctttccaaagctcttgagatgggaagtgatgttcatatc
cctaaagctcacctcagcttggagatctgagagtcccagggcatgaaaac
aaaataggtgatgtttgagtgcttactgtatacagtggcttcccttatgt
agctgtatttaatgctctcagtaccctctgcactgttggcatcatcttca
tttttacaggttgaagaatccagggcacagctactagtgctcaaagctag
gtagcttgtgagtgaggaattagatctgagtgtgaccctaagccccgaat
ttactgtagtgtctatagacctgcctttctgagctccagtcctgggaggg
cgccttccttactctctttccttcttccaaaggtcatggatggaaatgtc
ataactgcaaagagaacagcagcggtgtctgccatttgcacaaaggttaa
gaccgggaggagactggaagagtatggaacttatcttggtctgctttgcc
cagagctggaactcacataccaaaaatgaattactaatgagcacagttaa
ttcacaaaatactgatatgtgccacaataatccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165005527_165005653
seq2: B6Ng01-295I08.b_565_686 (reverse)

seq1  TTCCTTTCCTTTCCTTCCCTTTCCTTTCCTTCCTCTTTCCTTTCCTTTCC  50
      ||||||  | ||||||||  |||||||| ||| |  || |||||  || |
seq2  TTCCTT--CCTTCCTTCC--TTCCTTTCTTTCTTTCTTTCTTTCTCTTTC  46

seq1  TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT--TTCCTTTCCT--TTCCT  96
      ||| |||||  || |||||  || ||||| |  || ||||| |  || ||
seq2  TTT-CTTTC--TTTCTTTC--TTTCTTTCTTTCTTTCTTTCTTTCTTTCT  91

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  127
      |||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  122

seq1: chr7_127342619_127343704
seq2: B6Ng01-295I08.g_67_1152 (reverse)

seq1  CTTGGAATTATGTGGCACATATTCAGTAATTTTGTGAATT-ACTGTGCTC  49
      |||||| |  ||||||||||| ||||| |||||||||||| |||||||||
seq2  CTTGGATTATTGTGGCACATA-TCAGT-ATTTTGTGAATTAACTGTGCTC  48

seq1  ATTTAGTAATTCATTTTTGGTATGTGGAGTTCCAGCTCTGGGCAAAGGCA  99
      | ||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  A-TTAGTAATTCATTTTTGGTATGT-GAGTTCCAGCTCTGGGCAAA-GCA  95

seq1  GACCAAGATAAGTTCCATACTCCTCCAGTCTCCT-CCGGTCTT-ACCTTT  147
      |||||||||||||||||||||| ||||||||||| |||||||| ||||||
seq2  GACCAAGATAAGTTCCATACTCTTCCAGTCTCCTCCCGGTCTTAACCTTT  145

seq1  GTGGCAATGGCAGACACCGCTGCTGTTCTCTTTGCAGTTATGACATTTCC  197
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAATGGCAGACACCGCTGCTGTTCTCTTTGCAGTTATGACATTTCC  195

seq1  ATCCATGACC-TTGGAAGAAGGAAAGAGAGTAAGGAAGGCGCCCT-CCAG  245
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  ATCCATGACCTTTGGAAGAAGGAAAGAGAGTAAGGAAGGCGCCCTCCCAG  245

seq1  GACTGGAGCTCAGAAAGGCAGGTCTATAGACACTACAGTAAATTCGGGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGCTCAGAAAGGCAGGTCTATAGACACTACAGTAAATTCGGGGC  295

seq1  TTAGGGTCACACTCAGATCTAATTCCTCACTCACAAGCTACCTAGCTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCACACTCAGATCTAATTCCTCACTCACAAGCTACCTAGCTTTG  345

seq1  AGCACTAGTAGCTGTGCCCTGGATTCTTCAACCTGTAAAAATGAAGATGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGTAGCTGTGCCCTGGATTCTTCAACCTGTAAAAATGAAGATGA  395

seq1  TGCCAACAGTGCAGAGGGTACTGAGAGCATTAAATACAGCTACATAAGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAGTGCAGAGGGTACTGAGAGCATTAAATACAGCTACATAAGGG  445

seq1  AAGCCACTGTATACAGTAAGCACTCAAACATCACCTATTTTGTTTTCATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGTATACAGTAAGCACTCAAACATCACCTATTTTGTTTTCATG  495

seq1  CCCTGGGACTCTCAGATCTCCAAGCTGAGGTGAGCTTTAGGGATATGAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGACTCTCAGATCTCCAAGCTGAGGTGAGCTTTAGGGATATGAAC  545

seq1  ATCACTTCCCATCTCAAGAGCTTTGGAAAGACATTGTCCCCAGATGCCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTCCCATCTCAAGAGCTTTGGAAAGACATTGTCCCCAGATGCCAA  595

seq1  CTTGAGAATGACTCAGGCTGACTCTCTGGCTTGGGGTTTGTCGTTCAGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAATGACTCAGGCTGACTCTCTGGCTTGGGGTTTGTCGTTCAGTG  645

seq1  GTCTTCGAACTTATATGGGCACAAGGAAAACCAAGAAAATGGAATCCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGAACTTATATGGGCACAAGGAAAACCAAGAAAATGGAATCCCTA  695

seq1  GGTAGGAATTAAATTATCCTTGGCTTCCAAGGCTCCTAGGAGGTTCTGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAATTAAATTATCCTTGGCTTCCAAGGCTCCTAGGAGGTTCTGAT  745

seq1  GTCCAGGGAGGATTGAGCATTTGTCAAGCCCTTTACTCATCTCGGCTGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGAGGATTGAGCATTTGTCAAGCCCTTTACTCATCTCGGCTGGG  795

seq1  ACTCAAAAGGCGAGTGTTATCATAATTCTAATTTTACAGGGGAGAAGCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAAGGCGAGTGTTATCATAATTCTAATTTTACAGGGGAGAAGCTG  845

seq1  AGTCCTGTAGCAACAGAGCACTCGGCAAAGTCCCAGAGCCCCACCATCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTAGCAACAGAGCACTCGGCAAAGTCCCAGAGCCCCACCATCTA  895

seq1  GTATGAAAGGCCGATGCTCAAGAAGCAAGGCTGGGCGTCAAACCTCTTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAGGCCGATGCTCAAGAAGCAAGGCTGGGCGTCAAACCTCTTCA  945

seq1  GTCTAAGCCAACGGTGTATCCAGTCTAGGACTAATGGTTGTAGGCAGCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGCCAACGGTGTATCCAGTCTAGGACTAATGGTTGTAGGCAGCAT  995

seq1  AGCTGTTACTGCTGTGGATGAGCACAGGGTAAGAAGAGCTAGACCCTCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTACTGCTGTGGATGAGCACAGGGTAAGAAGAGCTAGACCCTCAT  1045

seq1  CTCTAGTGGGGTAATGGACAGCTGGATTTCTTAGGGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGGGGTAATGGACAGCTGGATTTCTTAGGGAATTC  1086