BAC Information

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BAC

Clone NameB6Ng01-296M07
Chromosome7 (Build37)
Map Location 20,225,514 - 20,327,829
singlet/doubletdoublet
Overlap geneClptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
Upstream genePsg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb
Downstream geneBcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296M07.bB6Ng01-296M07.g
ACCGA092293GA092294
length1,142369
definitionB6Ng01-296M07.b B6Ng01-296M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,225,514 - 20,226,659)(20,327,454 - 20,327,829)
sequence
gaattctcccaccaaggagcttggaggtatggcctataatcatctcccca
ggtgctagggatgtggctcagtggtagaacccctgcctagaatcccccag
tgaggggctgggggcgtggctcagtggtagagcccatgcctagaatcccc
cagtgaggggctgggggcgtggctcagtggtgtagcccctgcctagaatc
ccccagtgaggggctaggggcgtggctcagtggtagagcccctgcctaga
atccctcagtgaggagctgagggtgtggctcagtggtagaacccctgcct
agaatcccccagtgaggggctgggggtgtggctcagtggtaggacacctg
tctggaatgtccctgtaagaggcttgagggcatagatgacagcacagtct
acagtgtgaaaagccctaggttccaccaagaggcaaacaaaaaccagaag
gcctgtgctgctgagctgccccattccatccccacaagggagcagggagc
atagagctctgggctaggatcacatagctcttgtctcccacaagctaagg
gatgttggtgtattaatgccacttcctggcacctcagtaactatcatgga
gaatgaggctaaagcctacacttcttcatgggtcaaagcctacagttcct
acaacattaacatcattccattttttcttgatgaactatttggaaactag
tcccgcttgtccagctggagtaacaagcacctgaagttgggtatctcaga
gaataaactcctgggacatcctccaagaagggaagaggctgtcaacaagc
aacagacagggctgatgaaaacgggatacagacatggacacacatattca
caccacccacacagtagcttacaaccattcatagctccagtttcagagaa
tctgatgacccctgccatcaccagaaatgtacatagtacacatacatata
tgcaggtataatatcacacacataaaatttagtagatagattgactgatt
cattctaatacgaaactgctctagtcctatgggagcagagaagcccttgt
tctgagaccagctctaagctgctgcacccgtctaacggagtgcaaatgct
gttaccactggccataagctatgggtgtgaatacagaatcca
tctggccccaaacatccttatgcctctgtctccttagttttggaattatg
actgaaggctgctgagcctggttcactgatacctcctgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaatacaagaggacaatgc
ccaagaatctgttctccctatccactactcggatctcagagattaaaatc
cggatatcattcttggctgcaatcacctttacccgctgcgccatctcacc
agcccctccccgacaccttttcgagcccatttttctgtccttgatgtaca
tttgcttagctcctggacctgttctatttcaaatttgaaagctgtgtaat
cctaagtctactggatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20225514_20226659
seq2: B6Ng01-296M07.b_45_1186

seq1  GAATTCTCCCACCAAGGAGCTTGGAGGTATGGCCTATAATCATCTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACCAAGGAGCTTGGAGGTATGGCCTATAATCATCTCCCCA  50

seq1  GGTGCTAGGGATGTGGCTCAGTGGTAGAACCCCTGCCTAGAATCCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGGGATGTGGCTCAGTGGTAGAACCCCTGCCTAGAATCCCCCAG  100

seq1  TGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCATGCCTAGAATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCATGCCTAGAATCCCC  150

seq1  CAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGTAGCCCCTGCCTAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGTAGCCCCTGCCTAGAATC  200

seq1  CCCCAGTGAGGGGCTAGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGAGGGGCTAGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGA  250

seq1  ATCCCTCAGTGAGGAGCTGAGGGTGTGGCTCAGTGGTAGAACCCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAGTGAGGAGCTGAGGGTGTGGCTCAGTGGTAGAACCCCTGCCT  300

seq1  AGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTGGTAGGACACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTGGTAGGACACCTG  350

seq1  TCTGGAATGTCCCTGTAAGAGGCTTGAGGGCATAGATGACAGCACAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTCCCTGTAAGAGGCTTGAGGGCATAGATGACAGCACAGTCT  400

seq1  ACAGTGTGAAAAGCCCTAGGTTCCACCAAGAGGCAAACAAAAACCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGAAAAGCCCTAGGTTCCACCAAGAGGCAAACAAAAACCAGAAG  450

seq1  GCCTGTGCTGCTGAGCTGCCCCATTCCATCCCCACAAGGGAGCAGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTGCTGAGCTGCCCCATTCCATCCCCACAAGGGAGCAGGGAGC  500

seq1  ATAGAGCTCTGGGCTAGGATCACATAGCTCTTGTCTCCCACAAGCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTCTGGGCTAGGATCACATAGCTCTTGTCTCCCACAAGCTAAGG  550

seq1  GATGTTGGTGTATTAATGCCACTTCCTGGCACCTCAGTAACTATCATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGTGTATTAATGCCACTTCCTGGCACCTCAGTAACTATCATGGA  600

seq1  GAATGAGGCTAAAGCCTACACTTCTTCATGGGTCAAAGCCTACAGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGCTAAAGCCTACACTTCTTCATGGGTCAAAGCCTACAGTTCCT  650

seq1  ACAACATTAACATCATTCCATTTTTTCTTGATGAACTATTTGGAAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTAACATCATTCCATTTTTTCTTGATGAACTATTTGGAAACTAG  700

seq1  TCCCGCTTGTCCAGCTGGAGTAACAAGCACCTGAAGTTGGGTATCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTTGTCCAGCTGGAGTAACAAGCACCTGAAGTTGGGTATCTCAGA  750

seq1  GAATAAACTCCTGGGACATCCTCCAAGAAGGGAAGAGGCTGTCAACAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACTCCTGGGACATCCTCCAAGAAGGGAAGAGGCTGTCAACAAGC  800

seq1  AACAGACAGGGCTGATGAAAACGGGATACAGACATGGACACACATATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGGGCTGATGAAAACGGGATACAGACATGGACACACATATTCA  850

seq1  CACCACCCACACAGTAGCTTACAACCATTCATAGCTCCAGTTTCAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCACACAGTAGCTTACAACCATTCATAGCTCCAGTTTCAGAGAA  900

seq1  TCTGATGACCCCTGCCATCACCAGAAATGTACATAGTACACATACATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACCCCTGCCATCACCAGAAATGTACATAGTACACATACATATA  950

seq1  TGCAGGTATAATATCACACACATAAAATTTAGTAGATAGATTGACTGATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTATAATATCACACACATAAAATTTAGTAGATAGATTGACTGATT  1000

seq1  CATTCTAATACGAAACTGCTCTAGTCCTATGGGAGCAGAGAAGCCC-TGT  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTCTAATACGAAACTGCTCTAGTCCTATGGGAGCAGAGAAGCCCTTGT  1050

seq1  TCTGGAAGACCAAGCTTCTAAAGCTGCTGCACCCGTCTAACGGAGTTGCA  1099
      ||||  ||||| ||| ||| ||||||||||||||||||||||||| ||||
seq2  TCTG--AGACC-AGC-TCT-AAGCTGCTGCACCCGTCTAACGGAG-TGCA  1094

seq1  GATGCTGGTACCACTGGGCATAAGCTATGGGTGTG-ATACAGAATCCA  1146
       |||||| ||||||||| ||||||||||||||||| ||||||||||||
seq2  AATGCTGTTACCACTGGCCATAAGCTATGGGTGTGAATACAGAATCCA  1142

seq1: chr7_20327454_20327829
seq2: B6Ng01-296M07.g_69_443 (reverse)

seq1  ACCATCCAGAAGAGCTGGGATTACACAGCTTTGCAAATGTGAATTAGAAC  50
      ||||||||| |||  | ||||||||||||||| ||||| |||| ||||||
seq2  ACCATCCAGTAGACTTAGGATTACACAGCTTT-CAAATTTGAAATAGAAC  49

seq1  AGGTCTTGGAGCTAGGCAAAAGGACATCAAGGACAGAAAAATGGGCTTGA  100
      |||||  ||||||| ||||| | |||||||||||||||||||||||| ||
seq2  AGGTCCAGGAGCTAAGCAAATGTACATCAAGGACAGAAAAATGGGCTCGA  99

seq1  AAAGGTGTCGGGGAGGGGTTGGTGAGATGGCGCAGCGGGTAAAGGTGATT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGGTGTCGGGGAGGGGCTGGTGAGATGGCGCAGCGGGTAAAGGTGATT  149

seq1  GCAGCCAAGAATGATAACCGGATTTTAATCTCTGAGATCCGAGTAGTGGA  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAGCCAAGAATGATATCCGGATTTTAATCTCTGAGATCCGAGTAGTGGA  199

seq1  TAGGGAGAACAGACTCCTGAACATTGTCCTCTTGTATTAACACACACACA  250
      ||||||||||||| || ||  |||||||||||||||||||||||||||||
seq2  TAGGGAGAACAGATTCTTGGGCATTGTCCTCTTGTATTAACACACACACA  249

seq1  CACACACACACACACACACACACACACACACACAGGAGGTATCAGTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGGAGGTATCAGTGAAC  299

seq1  CAGGCTCAGCAGCCTTCAGTCATAATTCCAAAACTAAGGAGACAGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGCAGCCTTCAGTCATAATTCCAAAACTAAGGAGACAGAGGCA  349

seq1  TAAGGATGTTTGGGGCCAGAGAATTC  376
      ||||||||||||||||||||||||||
seq2  TAAGGATGTTTGGGGCCAGAGAATTC  375