BAC Information

Click to search

BAC

Clone NameB6Ng01-296M20
Chromosome7 (Build37)
Map Location 135,809,226 - 135,810,318
singlet/doubletsinglet
Overlap geneInpp5f
Upstream geneBcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030
Downstream geneLOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296M20.bB6Ng01-296M20.g
ACCGA092319GA092320
length1,1891,093
definitionB6Ng01-296M20.b B6Ng01-296M20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatcactccaatacttttaacatgaatggtgtgttatatttt
gtcaaaggctttttccacatctaataagatgataatgtggattttttttc
tttgagtttgtttatatattggattgcattgatggatttacatatattga
gccatccctgcacccctgggatgaagcctacttgatcatggtgggtgatt
gttttgatgtgtttgtgaaaaatttattgaatatttttgcatcaatattc
ataagggtaattggtctgtagtcctctttctttgttgtatctttttgggg
tttaggtatcagcataactgtggcttcatagaaagagttgggtagtgttc
cttctgtttctcttttatggaatagtttgaggagtattggtattagatct
tctttgaaggtatgatagaattgtgtactaaaaccatctgactctgggct
ttttgtggttgggagacttttaatgacttcatctatttccttggggttat
ggggctgtttttagatggtttatctaatcctggtttaactttggtaactg
atatatgtctagaaaatcatccattttatccaggttttctagttttgttg
cgtatagacttttgtagtaggatctgattatttttttaatttcctcagtt
tttgttgttatgtctcccttttcattcctgattttgttaatttggatact
gtctctgtgccctctggttagtctggctaagggtttgtctatcttgttga
ttttcgcaaagaaccagctcctagttttgttgattaaggaatacaaattg
gaaggaggaagtcaagttattactatttgcagatgatttcatagtataca
taagtgacccccaaaattctacccagagagctctacagctgattaaacaa
ctttcagcaaagcaactgggatataaattcaactcaaacaaatcagttag
cccttccttactcaaatgataacgggatgagaaagaaattagggaaacaa
caccctccacaatagccacaaaattaatataaaaatgcttggtggtaacc
ttcttaaccaagcaagtggaagaatctgttatgacaagaaattccaagtc
ttctggaagaaagatactggaaagacgtcaaagagatggaaatgggatct
tcccatgttccattgcgatgggccaggagaatataatac
gaattccagtgtttggtgagctttgtcagacactttcacattactgtgaa
aagctaaagtataagtagtgagaatagtagtaaaatgaagactgtaggct
aagcctttacctcattgttgccatcgccatccttctgaaggtctgagtta
cagagaaaacaccaagtgaaactaagcccggaaatgagtaggaccaacag
tgcagagaacagaggacagagtgggacccatagtgcacagcacagaggac
tgggtgggacccatagtgcacagcacagaggactaggtgggacccacagt
gcacagcacagaggacaggtggatttggaactgatgttgaagaggggtgt
gatagcacacgtctataatcccacactccagaaattgagacaggacaatc
tggaccacacaagaagaccctgtctcagagcaaagtgtgtgcgtgtgtct
gtggatgtcagaaagcgacttcagatgtcgtttctcaggtgcctggttta
tgtagagacaagttctctcactggcttggagctcaccaagtaggctaggc
taggcaagcaatgagccccagggatccacctccctccacctccccagcac
taggtcacaaagcgcatgtcccatgcctggcttgacgttaacacagaagt
gctttagacggagcctctcctcagtcttactctgctgcttttgcaacagg
acctgatctagtccagtccattttcaaacttaatacgtagctaaagatga
cactgaacttcctaccatgtttcctcctccaagtgcctgctttaaattct
taatgtgtttcgtttagaagaacagaagactctctgaatagggctctcct
aattagttagatgacattttaaaatgagacatttatggaaatcctctctg
ctgttcatttactatttgaattttaggctggtgaagaagtgtttctctaa
gcaggttgtgaagtgagctgagctgaggcagagctcagctgcagaatgct
tccatggcatccctacaaatgacagcaacagaactggcatgctagtgtgt
gctcgccgcccagttatgttggggggtgggaggtagcatgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135809226_135810318
seq2: B6Ng01-296M20.g_68_1160

seq1  GAATTCCAGTGTTTGGTGAGCTTTGTCAGACACTTTCACATTACTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTTTGGTGAGCTTTGTCAGACACTTTCACATTACTGTGAA  50

seq1  AAGCTAAAGTATAAGTAGTGAGAATAGTAGTAAAATGAAGACTGTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGTATAAGTAGTGAGAATAGTAGTAAAATGAAGACTGTAGGCT  100

seq1  AAGCCTTTACCTCATTGTTGCCATCGCCATCCTTCTGAAGGTCTGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTACCTCATTGTTGCCATCGCCATCCTTCTGAAGGTCTGAGTTA  150

seq1  CAGAGAAAACACCAAGTGAAACTAAGCCCGGAAATGAGTAGGACCAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAACACCAAGTGAAACTAAGCCCGGAAATGAGTAGGACCAACAG  200

seq1  TGCAGAGAACAGAGGACAGAGTGGGACCCATAGTGCACAGCACAGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAACAGAGGACAGAGTGGGACCCATAGTGCACAGCACAGAGGAC  250

seq1  TGGGTGGGACCCATAGTGCACAGCACAGAGGACTAGGTGGGACCCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGACCCATAGTGCACAGCACAGAGGACTAGGTGGGACCCACAGT  300

seq1  GCACAGCACAGAGGACAGGTGGATTTGGAACTGATGTTGAAGAGGGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCACAGAGGACAGGTGGATTTGGAACTGATGTTGAAGAGGGGTGT  350

seq1  GATAGCACACGTCTATAATCCCACACTCCAGAAATTGAGACAGGACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCACACGTCTATAATCCCACACTCCAGAAATTGAGACAGGACAATC  400

seq1  TGGACCACACAAGAAGACCCTGTCTCAGAGCAAAGTGTGTGCGTGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACACAAGAAGACCCTGTCTCAGAGCAAAGTGTGTGCGTGTGTCT  450

seq1  GTGGATGTCAGAAAGCGACTTCAGATGTCGTTTCTCAGGTGCCTGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTCAGAAAGCGACTTCAGATGTCGTTTCTCAGGTGCCTGGTTTA  500

seq1  TGTAGAGACAAGTTCTCTCACTGGCTTGGAGCTCACCAAGTAGGCTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGACAAGTTCTCTCACTGGCTTGGAGCTCACCAAGTAGGCTAGGC  550

seq1  TAGGCAAGCAATGAGCCCCAGGGATCCACCTCCCTCCACCTCCCCAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGCAATGAGCCCCAGGGATCCACCTCCCTCCACCTCCCCAGCAC  600

seq1  TAGGTCACAAAGCGCATGTCCCATGCCTGGCTTGACGTTAACACAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCACAAAGCGCATGTCCCATGCCTGGCTTGACGTTAACACAGAAGT  650

seq1  GCTTTAGACGGAGCCTCTCCTCAGTCTTACTCTGCTGCTTTTGCAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGACGGAGCCTCTCCTCAGTCTTACTCTGCTGCTTTTGCAACAGG  700

seq1  ACCTGATCTAGTCCAGTCCATTTTCAAACTTAATACGTAGCTAAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCTAGTCCAGTCCATTTTCAAACTTAATACGTAGCTAAAGATGA  750

seq1  CACTGAACTTCCTACCATGTTTCCTCCTCCAAGTGCCTGCTTTAAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTTCCTACCATGTTTCCTCCTCCAAGTGCCTGCTTTAAATTCT  800

seq1  TAATGTGTTTCGTTTAGAAGAACAGAAGACTCTCTGAATAGGGCTCTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTTCGTTTAGAAGAACAGAAGACTCTCTGAATAGGGCTCTCCT  850

seq1  AATTAGTTAGATGACATTTTAAAATGAGACATTTATGGAAATCCTCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTAGATGACATTTTAAAATGAGACATTTATGGAAATCCTCTCTG  900

seq1  CTGTTCATTTACTATTTGAATTTTAGGCTGGTGAAGAAAGTGTTTCTCTA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  CTGTTCATTTACTATTTGAATTTTAGGCTGGTGAAG-AAGTGTTTCTCT-  948

seq1  AAGCAGGTTGTGAAGTGGAGCTGAGCTGAGGCAGAGCTCAGCTGCAGAAT  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCAGGTTGTGAAGT-GAGCTGAGCTGAGGCAGAGCTCAGCTGCAGAAT  997

seq1  GCTTCCATGGCATCCCTACAAATGACAGCAACAGAACTGGGCATGCTAGT  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTCCATGGCATCCCTACAAATGACAGCAACAGAACT-GGCATGCTAGT  1046

seq1  GTGTGCCCGCCGCCCAG-TATGT--GGGGGT-GGAGGTAGCATGTAC  1093
      |||||| |||||||||| |||||  |||||| |||||||||||||||
seq2  GTGTGCTCGCCGCCCAGTTATGTTGGGGGGTGGGAGGTAGCATGTAC  1093