BAC Information

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BAC

Clone NameB6Ng01-297C19
Chromosome7 (Build37)
Map Location 47,290,114 - 47,416,546
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297C19.bB6Ng01-297C19.g
ACCGA092597GA092598
length1,1281,105
definitionB6Ng01-297C19.b B6Ng01-297C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,415,399 - 47,416,546)(47,290,114 - 47,291,224)
sequence
gaattcatgaatcaataactgaactaaggaaggtgatgtggtatctgaaa
gagtgatttgttaaaattctgagaatagccaaatagaaattttgtaaata
gaaattactgtgagtcaaacaaaatctctctagactgtctttacaatgaa
tgacatcaagcaaaagaatagtgtaccttcaagacaagctgatgatgtat
cacctctgataataaaaagtaagaatttatagaatatacaaacccaaagg
gcatgaaatgccaacttaatataaaacagaaacacatgaaagagccaaag
tcctggctaaagggatggaaatttattcagcaaatactatcagaatactg
tctcaaattttggaaattaaaacataggaaatacttagaactacaaatag
aacaactagaaaacaaaaactgtgtgttatcacacagttaaacattagcc
aaatgtcctaatgaagaaagaatgtcagaaactttgagggagtagtggtc
acatggaaaagggaagtgaaacaagccagaggaacataagaaatgataga
tcatggtgaagattagaatatattcatatagtgcttccagtaaaccatta
aactcctcagatgaataagaaaaaagaaaaacataccttattcagaacaa
taaatgaacaccgctaagtggcaagaattagtgtgcatctcaattctgaa
tcataattctgaatgtaaataatcttggttccctataaaaaagatgcagg
tggtatgactgtatttaaaaagcaagaaaagatcatttctgcctgcaaga
aacacacctcactatagggcaaagaacctattgagtgaaaatgccaggat
ggactgtcctaaaagtcagtggaatctggaagaaagcaagagtggatgtc
atcagcaaagcatatgacagcaaaactcagtcaggagagataaaggcact
cattacacaggataaagggaataatcaatcaaatgtaatatattatatat
atgcatggattttgtaagacaaatactactgaaaatagagaagttagatc
agaaacaatacattaaagtagattctaatataccacaatgatcatacaat
cctcctctgttttctcctcctccctctc
gaattcttggatccattaaataaggcccatcattcagtgttttcatgttt
ctgtatcacattcacctgaagccctgacagtgttcatcacaggctcccag
aggcaggagaggccgtcatgtaccgcctcaaccctttacctgaaggagaa
tctttcttagaatatgtatgacttcaaacaatcacagaaacttcataccg
gtgacaaacacaggttctctatggttccagagcagcagttattcccagca
aatggagtctgcatgtgaaaaacagccatcttcctccttatggatcacag
tggcttcctgcctgggccagtgatcctgccaagatctgccccccccttca
tcaggtcagcctccaggaatcaatgggagtctctgacaaggtgatggtta
tctctgggaccaagaacatgatccactgtattcctagagttagcctcttc
ttaagcatgaaatctatgggttctgctccatccacaaatatagcaagcca
taatttttctcgttgggaatataaacacaatgtgttgaaaagaaccattg
tttaataatggtaccaatttgtgaaaatatcagcttggggtggaggatgc
tgaaaagaggagtgcaactctgtggggatgaaggagggagaggatggaaa
aggaatggcaagaggacttattatgagcaaaacacaataaagtaagtata
taaaaatgtatacaaaattaataggagagctatgtatgtatagctgtatg
ctggaggcaggatgatatgtgattaagcccacacaggctgggagtcaggt
ttcactttgagtggaaatcctggctcagtctcttgccagctgtgaagccc
atgctacttagtacctcattttgttttaacacactgatggatgatgggaa
gaaatacctccaaaattgtgtgctctcggtaggccatcatataacatgtt
gtctccaaaccaccaagtttcaagatggaagggatgcctatattgtgttg
agtcaaattgataagcaacctcctgcaagcaagccagcatatttacagcc
tcccccaccccatcagctggaagatgaaatgtctggttgtgctcttattc
aaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_47415399_47416546
seq2: B6Ng01-297C19.b_46_1173 (reverse)

seq1  GAGAGGGAGATAGTGGGAGGAAGAGAGAGAGAAAAACAGA-GAGATTTGT  49
            ||||    ||||||| |||       |||||||| |||  ||||
seq2  ------GAGA----GGGAGGAGGAG-------AAAACAGAGGAGGATTGT  33

seq1  ATTGATCATTGTGGTATATTAGAATCTACTTTTAATGTA-TGTATCTGAT  98
      | ||||||||||||||||||||||||||| ||||||||| ||| ||||||
seq2  A-TGATCATTGTGGTATATTAGAATCTAC-TTTAATGTATTGTTTCTGAT  81

seq1  CTAACTTCTCTATTTTCAGTAGTATTTGTCTTACAAAATTCCATGCATAT  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAACTTCTCTATTTTCAGTAGTATTTGTCTTACAAAA-TCCATGCATAT  130

seq1  ATATAATATATTACATTTTGATTGATTATTCCCTTTATCCCTGTGTAATG  198
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  ATATAATATATTACA-TTTGATTGATTATTCCCTTTAT-CCTGTGTAATG  178

seq1  AGTGCCTTTATCTCTCCTGACTGAGTTTTGCTGTCATATGCTTTGCTGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTATCTCTCCTGACTGAGTTTTGCTGTCATATGCTTTGCTGAT  228

seq1  GACATCCACTCTTGCTTTCTTCCAGATTCCACTGACTTTTAGGACAGTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCACTCTTGCTTTCTTCCAGATTCCACTGACTTTTAGGACAGTCC  278

seq1  ATCCTGGCATTTTCACTCAATAGGTTCTTTGCCCTATAGTGAGGTGTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCATTTTCACTCAATAGGTTCTTTGCCCTATAGTGAGGTGTGTT  328

seq1  TCTTGCAGGCAGAAATGATCTTTTCTTGCTTTTTAAATACAGTCATACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGGCAGAAATGATCTTTTCTTGCTTTTTAAATACAGTCATACCA  378

seq1  CCTGCATCTTTTTTATAGGGAACCAAGATTATTTACATTCAGAATTATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTTTTTTATAGGGAACCAAGATTATTTACATTCAGAATTATGA  428

seq1  TTCAGAATTGAGATGCACACTAATTCTTGCCACTTAGCGGTGTTCATTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTGAGATGCACACTAATTCTTGCCACTTAGCGGTGTTCATTTA  478

seq1  TTGTTCTGAATAAGGTATGTTTTTCTTTTTTCTTATTCATCTGAGGAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAATAAGGTATGTTTTTCTTTTTTCTTATTCATCTGAGGAGTT  528

seq1  TAATGGTTTACTGGAAGCACTATATGAATATATTCTAATCTTCACCATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTACTGGAAGCACTATATGAATATATTCTAATCTTCACCATGA  578

seq1  TCTATCATTTCTTATGTTCCTCTGGCTTGTTTCACTTCCCTTTTCCATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATTTCTTATGTTCCTCTGGCTTGTTTCACTTCCCTTTTCCATGT  628

seq1  GACCACTACTCCCTCAAAGTTTCTGACATTCTTTCTTCATTAGGACATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTACTCCCTCAAAGTTTCTGACATTCTTTCTTCATTAGGACATTT  678

seq1  GGCTAATGTTTAACTGTGTGATAACACACAGTTTTTGTTTTCTAGTTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGTTTAACTGTGTGATAACACACAGTTTTTGTTTTCTAGTTGTT  728

seq1  CTATTTGTAGTTCTAAGTATTTCCTATGTTTTAATTTCCAAAATTTGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTAGTTCTAAGTATTTCCTATGTTTTAATTTCCAAAATTTGAGA  778

seq1  CAGTATTCTGATAGTATTTGCTGAATAAATTTCCATCCCTTTAGCCAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCTGATAGTATTTGCTGAATAAATTTCCATCCCTTTAGCCAGGA  828

seq1  CTTTGGCTCTTTCATGTGTTTCTGTTTTATATTAAGTTGGCATTTCATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCTTTCATGTGTTTCTGTTTTATATTAAGTTGGCATTTCATGC  878

seq1  CCTTTGGGTTTGTATATTCTATAAATTCTTACTTTTTATTATCAGAGGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGTTTGTATATTCTATAAATTCTTACTTTTTATTATCAGAGGTG  928

seq1  ATACATCATCAGCTTGTCTTGAAGGTACACTATTCTTTTGCTTGATGTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATCAGCTTGTCTTGAAGGTACACTATTCTTTTGCTTGATGTCA  978

seq1  TTCATTGTAAAGACAGTCTAGAGAGATTTTGTTTGACTCACAGTAATTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTAAAGACAGTCTAGAGAGATTTTGTTTGACTCACAGTAATTTC  1028

seq1  TATTTACAAAATTTCTATTTGGCTATTCTCAGAATTTTAACAAATCACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAAATTTCTATTTGGCTATTCTCAGAATTTTAACAAATCACTC  1078

seq1  TTTCAGATACCACATCACCTTCCTTAGTTCAGTTATTGATTCATGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATACCACATCACCTTCCTTAGTTCAGTTATTGATTCATGAATTC  1128

seq1: chr7_47290114_47291224
seq2: B6Ng01-297C19.g_67_1171

seq1  GAATTCTTGGATCCATTAAATAAGGCCCATCATTCAGTGTTTTCATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGATCCATTAAATAAGGCCCATCATTCAGTGTTTTCATGTTT  50

seq1  CTGTATCACATTCACCTGAAGCCCTGACAGTGTTCATCACAGGCTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACATTCACCTGAAGCCCTGACAGTGTTCATCACAGGCTCCCAG  100

seq1  AGGCAGGAGAGGCCGTCATGTACCGCCTCAACCCTTTACCTGAAGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAGGCCGTCATGTACCGCCTCAACCCTTTACCTGAAGGAGAA  150

seq1  TCTTTCTTAGAATATGTATGACTTCAAACAATCACAGAAACTTCATACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTAGAATATGTATGACTTCAAACAATCACAGAAACTTCATACCG  200

seq1  GTGACAAACACAGGTTCTCTATGGTTCCAGAGCAGCAGTTATTCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAACACAGGTTCTCTATGGTTCCAGAGCAGCAGTTATTCCCAGCA  250

seq1  AATGGAGTCTGCATGTGAAAAACAGCCATCTTCCTCCTTATGGATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTCTGCATGTGAAAAACAGCCATCTTCCTCCTTATGGATCACAG  300

seq1  TGGCTTCCTGCCTGGGCCAGTGATCCTGCCAAGATCTGCCCCCCCCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTGCCTGGGCCAGTGATCCTGCCAAGATCTGCCCCCCCCTTCA  350

seq1  TCAGGTCAGCCTCCAGGAATCAATGGGAGTCTCTGACAAGGTGATGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAGCCTCCAGGAATCAATGGGAGTCTCTGACAAGGTGATGGTTA  400

seq1  TCTCTGGGACCAAGAACATGATCCACTGTATTCCTAGAGTTAGCCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGACCAAGAACATGATCCACTGTATTCCTAGAGTTAGCCTCTTC  450

seq1  TTAAGCATGAAATCTATGGGTTCTGCTCCATCCACAAATATAGCAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATGAAATCTATGGGTTCTGCTCCATCCACAAATATAGCAAGCCA  500

seq1  TAATTTTTCTCGTTGGGAATATAAACACAATGTGTTGAAAAGAACCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTCGTTGGGAATATAAACACAATGTGTTGAAAAGAACCATTG  550

seq1  TTTAATAATGGTACCAATTTGTGAAAATATCAGCTTGGGGTGGAGGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATGGTACCAATTTGTGAAAATATCAGCTTGGGGTGGAGGATGC  600

seq1  TGAAAAGAGGAGTGCAACTCTGTGGGGATGAAGGAGGGAGAGGATGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGGAGTGCAACTCTGTGGGGATGAAGGAGGGAGAGGATGGAAA  650

seq1  AGGAATGGCAAGAGGACTTATTATGAGCAAAACACAATAAAGTAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGCAAGAGGACTTATTATGAGCAAAACACAATAAAGTAAGTATA  700

seq1  TAAAAATGTATACAAAATTAATAGGAGAGCTATGTATGTATAGCTGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTATACAAAATTAATAGGAGAGCTATGTATGTATAGCTGTATG  750

seq1  CTGGAGGCAGGATGATATGTGATTAAGCCCACACAGGCTGGGAGTCAGG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGAGGCAGGATGATATGTGATTAAGCCCACACAGGCTGGGAGTCAGGT  800

seq1  TTCAC-TTGAGTGGAAATCCTGGCTCAGTCTCTTGCCAGCTGTGAAGCCC  848
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGAGTGGAAATCCTGGCTCAGTCTCTTGCCAGCTGTGAAGCCC  850

seq1  ATGCTACTTAGTACCTCATTTTGTTTTAACACACTGATGGATGAT-GGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGCTACTTAGTACCTCATTTTGTTTTAACACACTGATGGATGATGGGAA  900

seq1  GAAATACCTCCAAAA-TGTGTGCTCTCGGTAGGGCATCATATAACATGTT  946
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  GAAATACCTCCAAAATTGTGTGCTCTCGGTAGGCCATCATATAACATGTT  950

seq1  GTCTCCCAAACCACC-AGGTTCAAGATGGAAAGGGAATGCCTATTATTGT  995
      |||| |||||||||| || ||||||||||||  || ||||||| ||||||
seq2  GTCT-CCAAACCACCAAGTTTCAAGATGGAA--GGGATGCCTA-TATTGT  996

seq1  GTTGAGTCAAATGGATAAAGCAAACCTCTGCCAGGCAAGCCAGCATA-TT  1044
      |||||||||||| ||| |||| ||||||   || ||||||||||||| ||
seq2  GTTGAGTCAAATTGAT-AAGC-AACCTCCTGCAAGCAAGCCAGCATATTT  1044

seq1  ACAGCCTCCCCCCCACCCCCATCAGCTGTGAGGATGAAAATGTCT-GTTG  1093
      ||||||||||||    |||||||||||| || |||| |||||||| ||||
seq2  ACAGCCTCCCCC---ACCCCATCAGCTG-GAAGATG-AAATGTCTGGTTG  1089

seq1  TGGCTCTTATTTCAAATG  1111
      | ||||||| ||||||||
seq2  T-GCTCTTA-TTCAAATG  1105