BAC Information

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BAC

Clone NameB6Ng01-297H20
Chromosome7 (Build37)
Map Location 49,948,665 - 50,065,728
singlet/doubletdoublet
Overlap geneEG546965, LOC546964
Upstream geneEG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179
Downstream geneLOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297H20.bB6Ng01-297H20.g
ACCGA092834GA092835
length1,1621,109
definitionB6Ng01-297H20.b B6Ng01-297H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,064,543 - 50,065,728)(49,948,665 - 49,949,778)
sequence
gaattcaggcaacacctattaatcacatgactttcttgtcaacctgaaaa
cacgccctgtctggaagtctcagatgtattcagtgtttctaagttgatat
agtaaagggaggataaattggctctaacaaatgactgtgtgaggggatac
agaagaagctgtcctcatgtgacctgcagggtagaaaggaaggggagggc
aaaggcttcctaggaaatctgctgcacaccatgagaagggcgtactctgg
ggttttgtctctacaccagctcacaagacaggatggaggtgcactcttac
tgcagcctgtctagaatatctcagggaagaaatatttcctgtcatgaaag
acaaagacgcatctgctttctggataaagaacaatgtagtgggacttggg
acatttctccaagaaacaaatttatttcacatggataaaaacactaggca
ataaatgcctaaatgaagtaagtgagttaattttacttctaagacaagcc
accattcctatgtctaaacggagacttcagatctgtgtgcagatctcttc
tgctggaggccgtaggccagtgtgctgcacattctttttatgtgagccgc
acttaatctgttttctccacaccagactcagcattttaaggaggactgtg
caaaggaaggtaccttttgaatcatgacagctgtttgcctgtgtggcaga
cacagaagaggaggtagatggagctgaaaggcctcttttccagacagaaa
tgtagctcaggtgagtgtgtggtagcagaatggcttgatgaatagagcag
aagactccagcttcagacacagctggacattggcgctcagccctgagggc
atctctgtctcctcagccctgagcttaataaacaggaatgacaggcataa
ttagcacagacagatgtttgtactgataaataatctgcatatgtctatct
aatgcagacatgcatagatagatagatagatagatagatagatagataga
tagatagatagattgacgatgatagacacgtgataggatcttattgagaa
gactgctatacaagactgcacatttattggtgtactgatgtgtatcacaa
gtactggaatgaacatatctaagtactcatagtatgtcttaaaatcacag
tcctggaacaac
gaattcaaactgaggccggggtcccagggaccgtttttattgttatggct
aattttgagaacagctagtcttgctatggcagttgtggtcattttgacca
ttagtcagtcctctcagatggggaaggaggcaggcagtcttgagcttctt
tacactggcagggaaaggcttgtttatattagcagggaaagggcaaggag
cagggggaagggaaaggcttctgtaaactgagaattcctcaagcagcagg
gggagggaaagtcttgcttctgtcttccagcacttcccttctccctcctg
taatcaaggaagatagcttgcagggcccattatttaacttgcagtgaaat
aaacaacccagcccataggggaagggcacccagaatattgacaattgagg
agatttttaggaaacactaagatttttgttctgaggtttcatggtcaggt
caggtcaggtaaactgcagctatgtttcacctggtaggcatcagatttta
caaagccctgggagcaaagcaggaaaaagatgacaaactctacacaacag
tattgctagccagcacatcttccttagtgggaagaggaaaaaacccacag
ctgtattaataaaggtatcctaatggacaaaactgatagatcgaatctct
ctgtatatgtagaaggtggatttattggaatggcttgtaagctgtggtcc
aaccagtccaacaatggctgtctgcaaatggacagatgaagaatatagta
gtggctcagtccatgtggctggatgacactgctggacttcagtctacata
acaattaggaataagtaggccagttttccaaaaactgagcttgctggtca
gggtaagatatgaagaccaggagagagaattaccatcttcagtgaccttt
ataaatgtagtctgccactagaagctgtggcctagattaaatatatcttc
ttatcacttcagagatccagatttaaaagagggtttacacttaaaaagat
aatatcatgaaaatccttcaacagtaccggactgtagcaatttactattt
ccatgtttatagcattgacgaacagaatacccatcacaggaggcaaggca
gaagagtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50064543_50065728
seq2: B6Ng01-297H20.b_45_1206 (reverse)

seq1  GTTGTTCCAGGAATGTGATTTTTAAAAGACATAACTATGGGAGATACTTA  50
      |||||||||||| |||||||||   ||||||| |||||| |   ||||||
seq2  GTTGTTCCAGGACTGTGATTTT---AAGACAT-ACTATGAG---TACTTA  43

seq1  GATA-GTTTAATACAGTAACTTTGTTGATACCACATTAAATTACACACAA  99
      |||| ||| | | |||| ||||   ||||| |||||   | ||||| |||
seq2  GATATGTTCATTCCAGT-ACTT--GTGATA-CACAT--CAGTACAC-CAA  86

seq1  TAAAATGTGCAGTTCTTTGTATACCAGTCTTTCCTCAAATAAGAT-CTAT  148
      | |||||||||||   ||||||| |||||||  ||| |||||||| ||||
seq2  T-AAATGTGCAGT--CTTGTATAGCAGTCTT--CTC-AATAAGATCCTAT  130

seq1  CACCTGTTGTCTATCTATCTGTCTATCTATCTATCTATCTATCTATCTAT  198
      |||    |||||||| ||| ||| ||||||||||||||||||||||||||
seq2  CAC---GTGTCTATC-ATC-GTCAATCTATCTATCTATCTATCTATCTAT  175

seq1  CTATCTATCTATCTATCTATCTATGCATGTCTGCATTAGATAGACATATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATGCATGTCTGCATTAGATAGACATATG  225

seq1  CAGATTATTTATCAGTACAAACATCTGTCTGTGCTAATTATGCCTGTCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATTTATCAGTACAAACATCTGTCTGTGCTAATTATGCCTGTCAT  275

seq1  TCCTGTTTATTAAGCTCAGGGCTGAGGAGACAGAGATGCCCTCAGGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCTGTTTATTAAGCTCAGGGCTGAGGAGACAGAGATGCCCTCAGGG-CT  324

seq1  GAGCGCCAATGTCCAGCTGTGTCTGAAGCTGGAGTCTTCTGCTCTATTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCAATGTCCAGCTGTGTCTGAAGCTGGAGTCTTCTGCTCTATTCA  374

seq1  TCAAGCCATTCTGCTACCACACACTCACCTGAGCTACATTTCTGTCTGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCATTCTGCTACCACACACTCACCTGAGCTACATTTCTGTCTGGA  424

seq1  AAAGAGGCCTTTCAGCTCCATCTACCTCCTCTTCTGTGTCTGCCACACAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCTTTCAGCTCCATCTACCTCCTCTTCTGTGTCTGCCACACAG  474

seq1  GCAAACAGCTGTCATGATTCAAAAGGTACCTTCCTTTGCACAGTCCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGCTGTCATGATTCAAAAGGTACCTTCCTTTGCACAGTCCTCCT  524

seq1  TAAAATGCTGAGTCTGGTGTGGAGAAAACAGATTAAGTGCGGCTCACATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTGAGTCTGGTGTGGAGAAAACAGATTAAGTGCGGCTCACATA  574

seq1  AAAAGAATGTGCAGCACACTGGCCTACGGCCTCCAGCAGAAGAGATCTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATGTGCAGCACACTGGCCTACGGCCTCCAGCAGAAGAGATCTGC  624

seq1  ACACAGATCTGAAGTCTCCGTTTAGACATAGGAATGGTGGCTTGTCTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATCTGAAGTCTCCGTTTAGACATAGGAATGGTGGCTTGTCTTAG  674

seq1  AAGTAAAATTAACTCACTTACTTCATTTAGGCATTTATTGCCTAGTGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATTAACTCACTTACTTCATTTAGGCATTTATTGCCTAGTGTTT  724

seq1  TTATCCATGTGAAATAAATTTGTTTCTTGGAGAAATGTCCCAAGTCCCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATGTGAAATAAATTTGTTTCTTGGAGAAATGTCCCAAGTCCCAC  774

seq1  TACATTGTTCTTTATCCAGAAAGCAGATGCGTCTTTGTCTTTCATGACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTTCTTTATCCAGAAAGCAGATGCGTCTTTGTCTTTCATGACAG  824

seq1  GAAATATTTCTTCCCTGAGATATTCTAGACAGGCTGCAGTAAGAGTGCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTCTTCCCTGAGATATTCTAGACAGGCTGCAGTAAGAGTGCAC  874

seq1  CTCCATCCTGTCTTGTGAGCTGGTGTAGAGACAAAACCCCAGAGTACGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTGTCTTGTGAGCTGGTGTAGAGACAAAACCCCAGAGTACGCC  924

seq1  CTTCTCATGGTGTGCAGCAGATTTCCTAGGAAGCCTTTGCCCTCCCCTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATGGTGTGCAGCAGATTTCCTAGGAAGCCTTTGCCCTCCCCTTC  974

seq1  CTTTCTACCCTGCAGGTCACATGAGGACAGCTTCTTCTGTATCCCCTCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACCCTGCAGGTCACATGAGGACAGCTTCTTCTGTATCCCCTCAC  1024

seq1  ACAGTCATTTGTTAGAGCCAATTTATCCTCCCTTTACTATATCAACTTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTTGTTAGAGCCAATTTATCCTCCCTTTACTATATCAACTTAG  1074

seq1  AAACACTGAATACATCTGAGACTTCCAGACAGGGCGTGTTTTCAGGTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAATACATCTGAGACTTCCAGACAGGGCGTGTTTTCAGGTTGA  1124

seq1  CAAGAAAGTCATGTGATTAATAGGTGTTGCCTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTCATGTGATTAATAGGTGTTGCCTGAATTC  1162

seq1: chr7_49948665_49949778
seq2: B6Ng01-297H20.g_69_1177

seq1  GAATTCAAACTGAGGCCGGGGTCCCAGGGACCGTTTTTATTGTTATGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGAGGCCGGGGTCCCAGGGACCGTTTTTATTGTTATGGCT  50

seq1  AATTTTGAGAACAGCTAGTCTTGCTATGGCAGTTGTGGTCATTTTGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGAACAGCTAGTCTTGCTATGGCAGTTGTGGTCATTTTGACCA  100

seq1  TTAGTCAGTCCTCTCAGATGGGGAAGGAGGCAGGCAGTCTTGAGCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTCCTCTCAGATGGGGAAGGAGGCAGGCAGTCTTGAGCTTCTT  150

seq1  TACACTGGCAGGGAAAGGCTTGTTTATATTAGCAGGGAAAGGGCAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGCAGGGAAAGGCTTGTTTATATTAGCAGGGAAAGGGCAAGGAG  200

seq1  CAGGGGGAAGGGAAAGGCTTCTGTAAACTGAGAATTCCTCAAGCAGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAAGGGAAAGGCTTCTGTAAACTGAGAATTCCTCAAGCAGCAGG  250

seq1  GGGAGGGAAAGTCTTGCTTCTGTCTTCCAGCACTTCCCTTCTCCCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAAAGTCTTGCTTCTGTCTTCCAGCACTTCCCTTCTCCCTCCTG  300

seq1  TAATCAAGGAAGATAGCTTGCAGGGCCCATTATTTAACTTGCAGTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGGAAGATAGCTTGCAGGGCCCATTATTTAACTTGCAGTGAAAT  350

seq1  AAACAACCCAGCCCATAGGGGAAGGGCACCCAGAATATTGACAATTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCCAGCCCATAGGGGAAGGGCACCCAGAATATTGACAATTGAGG  400

seq1  AGATTTTTAGGAAACACTAAGATTTTTGTTCTGAGGTTTCATGGTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTAGGAAACACTAAGATTTTTGTTCTGAGGTTTCATGGTCAGGT  450

seq1  CAGGTCAGGTAAACTGCAGCTATGTTTCACCTGGTAGGCATCAGATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGGTAAACTGCAGCTATGTTTCACCTGGTAGGCATCAGATTTTA  500

seq1  CAAAGCCCTGGGAGCAAAGCAGGAAAAAGATGACAAACTCTACACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCTGGGAGCAAAGCAGGAAAAAGATGACAAACTCTACACAACAG  550

seq1  TATTGCTAGCCAGCACATCTTCCTTAGTGGGAAGAGGAAAAAACCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTAGCCAGCACATCTTCCTTAGTGGGAAGAGGAAAAAACCCACAG  600

seq1  CTGTATTAATAAAGGTATCCTAATGGACAAAACTGATAGATCGAATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTAATAAAGGTATCCTAATGGACAAAACTGATAGATCGAATCTCT  650

seq1  CTGTATATGTAGAAGGTGGATTTATTGGAATGGCTTGTAAGCTGTGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATGTAGAAGGTGGATTTATTGGAATGGCTTGTAAGCTGTGGTCC  700

seq1  AACCAGTCCAACAATGGCTGTCTGCAAATGGACAGATGAAGAATATAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCCAACAATGGCTGTCTGCAAATGGACAGATGAAGAATATAGTA  750

seq1  GTGGCTCAGTCCATGTGGCTGGATGACACTGCTGGACTTCAGTCTACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGTCCATGTGGCTGGATGACACTGCTGGACTTCAGTCTACATA  800

seq1  ACAATTAGGAATAAGTAGGCCAGTTTTCCAAAAACTGAGCTTGCTGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAGGAATAAGTAGGCCAGTTTTCCAAAAACTGAGCTTGCTGGTCA  850

seq1  GGGTAAGATATGAAGACCAGGAGAGAGAATTACCATCTTCAGTGACCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGATATGAAGACCAGGAGAGAGAATTACCATCTTCAGTGACCTTT  900

seq1  ATAAATGTAGTCTGCCACTAGAAGCTGTGGCCTAGATTAAATATATC-TC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAAATGTAGTCTGCCACTAGAAGCTGTGGCCTAGATTAAATATATCTTC  950

seq1  TTATCACTTCAGAAGATCCAGATTTAAAAGAGGGTTTACAACTTAAAAAG  999
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TTATCACTTCAG-AGATCCAGATTTAAAAGAGGGTTTAC-ACTTAAAAAG  998

seq1  ATATAATCATGAAAAATCCTTC-ACAGTACCGGAACTGTAGCAATTTTAC  1048
      |||  |||||| |||||||||| |||||||||| |||||||||| |||||
seq2  ATAATATCATG-AAAATCCTTCAACAGTACCGG-ACTGTAGCAA-TTTAC  1045

seq1  TAATTCCATG--TATAGCCAATTTGACGACCAAGAATAACCATCACAAGA  1096
      || |||||||  ||||||    ||||||| | |||||| |||||||| ||
seq2  TATTTCCATGTTTATAGC---ATTGACGAAC-AGAATACCCATCACAGGA  1091

seq1  GGCAAGGCAGAAGAGTTA  1114
      ||||||||||||||||||
seq2  GGCAAGGCAGAAGAGTTA  1109