BAC Information

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BAC

Clone NameB6Ng01-298B06
Chromosome7 (Build37)
Map Location 6,749,396 - 6,861,088
singlet/doubletdoublet
Overlap geneUsp29
Upstream geneV1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298B06.bB6Ng01-298B06.g
ACCGA093281GA093282
length1,006449
definitionB6Ng01-298B06.b B6Ng01-298B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,860,471 - 6,861,088)(6,749,396 - 6,749,850)
sequence
gaattctccagtgctgagtgtccacagtgcaagacaaaagagcccctgga
caagatggcatcacctgctgaagatccaattgaagctctcttctgttgtg
aaagtagagaaaaacgacattatgttatttgtaataaaatggatggatgg
ggctggagaaatggctcagtggttaaggacactcgttggatcttggtttg
gctcccagcatctacatggcggctcacaaccatctgtaactcaagttcca
ggggacccaacaccctcttctgacctctggcatcaggcatgcatgtggta
catagacatgtatgcaagcaacatgtccatacgtactaaattaaaataaa
taaatcttttttttttcaagagagaaaatagagaattggaggtcatcata
ttgcttaaggataaaccagactcacaaagacaaataatgcatatttctct
cgtatgtagtgcccagtatatatgtattctctctctttctctttctcttt
ctctctctctctctctctctctctctctctctctcacacacacacacaca
cacacacacacatgcttgcacatacatgcatgtatatgaaagtagtctgg
ggactattggctttttgaaattgtctgtatcaattcctcaactaaagttc
aggaatcatagcggaaaagggagaagggaagattctgttccagaagagca
gaaaatttctgtgagattttgccttctagaaatgtcagaagctacaccca
tgaagtctgaacagcatggctgcctaattaagacctgaacaacaatgaca
ttaattaggcatgctaacatagagaggccaaatcttgcagggcctcagac
ctacacaaagaactatgtgcaactgcagaatgctgagagcaggagatatg
gtctttcccaaggaagagcatcctacctgtctgtccataccaagttgtca
gtcctgagacaatgtgtaaatggtagcatacatagatggagcaagttgta
ttttat
tttgccttcattttgctgctgtgaaaaaacaaaacaaaacaaaaataacc
actgttggtctaggacttaatttatttttaaagaattttttccttttctt
tttcagcttctttttgaaacatggtctcattctgtgtcccaggttagcct
gggattcatggcaattctcctgcttcagtttccctagtgctagggttata
agtgtgagctactatgctcagctttttaaaaaagttcttagtgtatgtat
gttgtacataataattagcttatttatcttgtattttcatacatgtatag
tgtgcttgtgtttacatgcacgtgtgtgtgaatgtgtatgtgtgtgtgtg
tgtgggggtgcttgtgcatgtgtgcacatgagcatgtagaggtccaagtt
tatgccacgagacaccctttatcactctcttcccttttccattgaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6860471_6861088
seq2: B6Ng01-298B06.b_49_666 (reverse)

seq1  TCAAAAAGCCAATAGTCCCCAGACTACTTTCATATACATGCATGTATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGCCAATAGTCCCCAGACTACTTTCATATACATGCATGTATGTG  50

seq1  CAAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAGAGAGAATACATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAGAGAGAATACATATA  150

seq1  TACTGGGCACTACATACGAGAGAAATATGCATTATTTGTCTTTGTGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGCACTACATACGAGAGAAATATGCATTATTTGTCTTTGTGAGTC  200

seq1  TGGTTTATCCTTAAGCAATATGATGACCTCCAATTCTCTATTTTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATCCTTAAGCAATATGATGACCTCCAATTCTCTATTTTCTCTCT  250

seq1  TGAAAAAAAAAAGATTTATTTATTTTAATTTAGTACGTATGGACATGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAAAGATTTATTTATTTTAATTTAGTACGTATGGACATGTTG  300

seq1  CTTGCATACATGTCTATGTACCACATGCATGCCTGATGCCAGAGGTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATACATGTCTATGTACCACATGCATGCCTGATGCCAGAGGTCAGA  350

seq1  AGAGGGTGTTGGGTCCCCTGGAACTTGAGTTACAGATGGTTGTGAGCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGTTGGGTCCCCTGGAACTTGAGTTACAGATGGTTGTGAGCCGC  400

seq1  CATGTAGATGCTGGGAGCCAAACCAAGATCCAACGAGTGTCCTTAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGATGCTGGGAGCCAAACCAAGATCCAACGAGTGTCCTTAACCAC  450

seq1  TGAGCCATTTCTCCAGCCCCATCCATCCATTTTATTACAAATAACATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATTTCTCCAGCCCCATCCATCCATTTTATTACAAATAACATAAT  500

seq1  GTCGTTTTTCTCTACTTTCACAACAGAAGAGAGCTTCAATTGGATCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTTTCTCTACTTTCACAACAGAAGAGAGCTTCAATTGGATCTTCA  550

seq1  GCAGGTGATGCCATCTTGTCCAGGGGCTCTTTTGTCTTGCACTGTGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGATGCCATCTTGTCCAGGGGCTCTTTTGTCTTGCACTGTGGACA  600

seq1  CTCAGCACTGGAGAATTC  618
      ||||||||||||||||||
seq2  CTCAGCACTGGAGAATTC  618

seq1: chr7_6749396_6749850
seq2: B6Ng01-298B06.g_65_519

seq1  GAATTCTTTGCCTTCATTTTGCTGCTGTGAAAAAACAAAACAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCTTCATTTTGCTGCTGTGAAAAAACAAAACAAAACAAAA  50

seq1  ATAACCACTGTTGGTCTAGGACTTAATTTATTTTTAAAGAATTTTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACTGTTGGTCTAGGACTTAATTTATTTTTAAAGAATTTTTTCCT  100

seq1  TTTCTTTTTCAGCTTCTTTTTGAAACATGGTCTCATTCTGTGTCCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCAGCTTCTTTTTGAAACATGGTCTCATTCTGTGTCCCAGGT  150

seq1  TAGCCTGGGATTCATGGCAATTCTCCTGCTTCAGTTTCCCTAGTGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGGATTCATGGCAATTCTCCTGCTTCAGTTTCCCTAGTGCTAGG  200

seq1  GTTATAAGTGTGAGCTACTATGCTCAGCTTTTTAAAAAAGTTCTTAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGTGTGAGCTACTATGCTCAGCTTTTTAAAAAAGTTCTTAGTGT  250

seq1  ATGTATGTTGTACATAATAATTAGCTTATTTATCTTGTATTTTCATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTTGTACATAATAATTAGCTTATTTATCTTGTATTTTCATACAT  300

seq1  GTATAGTGTGCTTGTGTTTACATGCACGTGTGTGTGAATGTGTATGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGTGCTTGTGTTTACATGCACGTGTGTGTGAATGTGTATGTGTG  350

seq1  TGTGTGTGTGGGGGTGCTTGTGCATGTGTGCACATGTGCATGTAGAGGTC  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGTGTGTGGGGGTGCTTGTGCATGTGTGCACATGAGCATGTAGAGGTC  400

seq1  CAAGTTTATGCCAGGAGACACCCTTTATCACTCTCTTCCCTTATCCATTG  450
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CAAGTTTATGCCACGAGACACCCTTTATCACTCTCTTCCCTTTTCCATTG  450

seq1  AGGCA  455
      |||||
seq2  AGGCA  455