BAC Information

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BAC

Clone NameB6Ng01-298M16
Chromosome7 (Build37)
Map Location 71,677,166 - 71,801,529
singlet/doubletdoublet
Overlap geneApba2
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee
Downstream gene5730507A09Rik, Ndnl2, Tjp1, Gm1693, EG665234, Tarsl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298M16.bB6Ng01-298M16.g
ACCGA093809GA093810
length1,0171,160
definitionB6Ng01-298M16.b B6Ng01-298M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,800,531 - 71,801,529)(71,677,166 - 71,678,339)
sequence
gaattcctagggttttgttttgtttggggtgtttgtttgtttgtttgttt
tataagagagaggagagagaatgatacacacactaccaccaccaccacca
tgatgtcacacaaaattatacaaatgtttttaaagaaaatataagggcta
caagatggccaggcaattaagagcacactctgctcttgcagaggacctga
gttctagtcccagtacccatgtctagcagcttacaatcacctataactcc
aatccctggagatccaatccctttgatctccaagggtccagcgcttgcgc
acacacacatacatgctcacatacatacacatagttaaataaaaaaaaca
aacctctagttaaaagaaaatacaggatttgagagatggctctgtggtta
ggaccactggatgcttctccagaggacctgggtctgattcccagcaccca
catggtagctaacaacagtcagttactccagttccaacggattcaatgtt
ctcttatagcctccttgggtaccaggcatgcaagcagtacaccaccatat
atgtagaggaaacacccatatgcataagagagagagagagagagagagag
agagagagagagagagagaggaagggaagcacagatttctgcctattctt
aatatcaaatatagaaaggcaaataagaaaccaagctaaggagaaatacg
aaaggggccactctccttgaaaggaattacagtactggaccagccccata
aggaaaggagaaggcagagagaacatagagcctgtgaaaacagcttccaa
ctcgctgccagcaaatgcaagtgcaggatccctcctccctgcacagcctg
gacttaagggcatcccctacccactgcatggaaggaaagttacatcagcc
tcccagagtcagaaaaactccgggagctcctgtctagtctccagttctct
cccctggcccctccccggcattcatggtcctgcggggcaagaaggcagag
gccttattttctcagct
gaattccattgtgcagatgtaccacgttttcttcatccattcagaatgac
ttgtttttaaattaaattatattatttttaaactttttaattgattcttt
gtgaatttcacatcatgtaccccaatcccgttcatttccccatccctttc
tatacacccccaccccaacatacacagccacagttgatctcatgtagcta
aaatgtcacaaaagaaggaaggggactggtgtcatggacagtagcctaag
cagggtacccttagtacctgtagtgctgttggttgctggggttgtggatt
gtcatctgttgggtacctgcaggcacctgttcgcaggctgagggtcttgg
agctcagacttccctcagctctgcctagttttttctttctgttttccttc
cttccatccctccctccatctcatcctccctccatgtcttcctccctccc
tcccttcctcctcccatctctctgtcttttgatccagagaattaaactca
agatcttatatgtgctaggcaagctctctagccctaagccacaccccttc
ccatttaaaaaaaaaatctgggttacccagggtgaccctgggctcttgtt
caagctctgaaacttgcaacagaacctgtggtcagagggttccttggcta
aataggaaattgctttgtctcctgttcacctttgtctgagtgcggatgcc
tctgtccgtagggttctatacactgcccggtattttctgggaccgtttga
ctttcctggtggccctatccagatgactgacattaagggttggcaggttc
ctgtaattctaatgggaatcatttcctcgccccactgaatgtgagatctg
cttcatttaatccattccttccagtttgggattgggttcttagaattgta
gggcaaatgctgaaaatagggtggcctttggtgacaattattgttggctt
tgtcagtcacccttaactggggagaacagcacttttccaggtagggattc
agctgcacatcccagtcaagacacagcattggtcctctgtgtctgacatt
gctgaaggtgagaattcagatgaacttctatagggaattcgtactcctct
ggccaggccctcctgtggtgattaactctgccatgcacatcatttccttg
tctaaggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_71800531_71801529
seq2: B6Ng01-298M16.b_47_1063 (reverse)

seq1  AGCTG-GAAAATAAGGCCTCTGCCTTCT--GCCCGCAGGAACATGAATGC  47
      ||||| ||||||||||||||||||||||   ||||||||| |||||||||
seq2  AGCTGAGAAAATAAGGCCTCTGCCTTCTTGCCCCGCAGGACCATGAATGC  50

seq1  CGGGGAGGGGC--AGGGAGAGAACTGGAGACTAGACAGGAGCT-CCGGAG  94
      |||||||||||   ||||||||||||||||||||||||||||| ||||||
seq2  CGGGGAGGGGCCAGGGGAGAGAACTGGAGACTAGACAGGAGCTCCCGGAG  100

seq1  -TTTTCTGACTCTTGGAGGCTGATGTAACTTTCC-TCCATGCAGTGGTTA  142
       |||||||||||| |||||||||||||||||||| |||||||||||| ||
seq2  TTTTTCTGACTCTGGGAGGCTGATGTAACTTTCCTTCCATGCAGTGGGTA  150

seq1  -GGGATGCCCTTAAGTCCA-GCTGTGCAGGGAGGA-GGATCCTGCACCTG  189
       |||||||||||||||||| ||||||||||||||| ||||||||||| ||
seq2  GGGGATGCCCTTAAGTCCAGGCTGTGCAGGGAGGAGGGATCCTGCACTTG  200

seq1  CA-TTGCTGGCAGCGAGTTGGAAGCTGTTTTCACAGGCTCTATGTTCTCT  238
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGGCAGCGAGTTGGAAGCTGTTTTCACAGGCTCTATGTTCTCT  250

seq1  CTGCCTTCTCCTTTCCTTCTGGGGCTGGTCCAGTACTGT-ATTCC-TTCA  286
      |||||||||||||||||| |||||||||||||||||||| ||||| ||||
seq2  CTGCCTTCTCCTTTCCTTATGGGGCTGGTCCAGTACTGTAATTCCTTTCA  300

seq1  AGGAGAGTGG-CCCTTTCGTATTTCTCCTTAGCTTGGTTTCTTA-TTGCC  334
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGAGTGGCCCCTTTCGTATTTCTCCTTAGCTTGGTTTCTTATTTGCC  350

seq1  -TTCTATATTTGATATTAAGAATAGGCAGAAATCTGTGCTT-CCTTCCTC  382
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTATATTTGATATTAAGAATAGGCAGAAATCTGTGCTTCCCTTCCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATGCATAT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATGCATAT  450

seq1  GGGTGTTTCCTCTACATATATGGTGGTGTACTGCTTGCATGCCTGGTACC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTCCTCTACATATATGGTGGTGTACTGCTTGCATGCCTGGTACC  500

seq1  CAAGGAGGCTATAAGAGAACATTGAATCCGTTGGAACTGGAGTAACTGAC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGCTATAAGAGAACATTGAATCCGTTGGAACTGGAGTAACTGAC  550

seq1  TGTTGTTAGCTACCATGTGGGTGCTGGGAATCAGACCCAGGTCCTCTGGA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAGCTACCATGTGGGTGCTGGGAATCAGACCCAGGTCCTCTGGA  600

seq1  GAAGCATCCAGTGGTCCTAACCACAGAGCCATCTCTCAAATCCTGTATTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCCAGTGGTCCTAACCACAGAGCCATCTCTCAAATCCTGTATTT  650

seq1  TCTTTTAACTAGAGGTTTGTTTTTTTTATTTAACTATGTGTATGTATGTG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAACTAGAGGTTTGTTTTTTTTATTTAACTATGTGTATGTATGTG  700

seq1  AGCATGTATGTGTGTGTGCGCAAGCGCTGGACCCTTGGAGATCAAAGGGA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTATGTGTGTGTGCGCAAGCGCTGGACCCTTGGAGATCAAAGGGA  750

seq1  TTGGATCTCCAGGGATTGGAGTTATAGGTGATTGTAAGCTGCTAGACATG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTCCAGGGATTGGAGTTATAGGTGATTGTAAGCTGCTAGACATG  800

seq1  GGTACTGGGACTAGAACTCAGGTCCTCTGCAAGAGCAGAGTGTGCTCTTA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGGACTAGAACTCAGGTCCTCTGCAAGAGCAGAGTGTGCTCTTA  850

seq1  ATTGCCTGGCCATCTTGTAGCCCTTATATTTTCTTTAAAAACATTTGTAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGGCCATCTTGTAGCCCTTATATTTTCTTTAAAAACATTTGTAT  900

seq1  AATTTTGTGTGACATCATGGTGGTGGTGGTGGTAGTGTGTGTATCATTCT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGTGACATCATGGTGGTGGTGGTGGTAGTGTGTGTATCATTCT  950

seq1  CTCTCCTCTCTCTTATAAAACAAACAAACAAACAAACACCCCAAACAAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCTCTTATAAAACAAACAAACAAACAAACACCCCAAACAAAA  1000

seq1  CAAAACCCTAGGAATTC  999
      |||||||||||||||||
seq2  CAAAACCCTAGGAATTC  1017

seq1: chr7_71677166_71678339
seq2: B6Ng01-298M16.g_67_1226

seq1  GAATTCCATTGTGCAGATGTACCACGTTTTCTTCATCCATTCAGAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTGCAGATGTACCACGTTTTCTTCATCCATTCAGAATGAC  50

seq1  TTGTTTTTAAATTAAATTATATTATTTTTAAACTTTTTAATTGATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAAATTAAATTATATTATTTTTAAACTTTTTAATTGATTCTTT  100

seq1  GTGAATTTCACATCATGTACCCCAATCCCGTTCATTTCCCCATCCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTCACATCATGTACCCCAATCCCGTTCATTTCCCCATCCCTTTC  150

seq1  TATACACCCCCACCCCAACATACACAGCCACAGTTGATCTCATGTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCCCCACCCCAACATACACAGCCACAGTTGATCTCATGTAGCTA  200

seq1  AAATGTCACAAAAGAAGGAAGGGGACTGGTGTCATGGACAGTAGCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCACAAAAGAAGGAAGGGGACTGGTGTCATGGACAGTAGCCTAAG  250

seq1  CAGGGTACCCTTAGTACCTGTAGTGCTGTTGGTTGCTGGGGTTGTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACCCTTAGTACCTGTAGTGCTGTTGGTTGCTGGGGTTGTGGATT  300

seq1  GTCATCTGTTGGGTACCTGCAGGCACCTGTTCGCAGGCTGAGGGTCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGTTGGGTACCTGCAGGCACCTGTTCGCAGGCTGAGGGTCTTGG  350

seq1  AGCTCAGACTTCCCTCAGCTCTGCCTAGTTTTTTCTTTCTGTTTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGACTTCCCTCAGCTCTGCCTAGTTTTTTCTTTCTGTTTTCCTTC  400

seq1  CTTCCATCCCTCCCTCCATCTCATCCTCCCTCCATGTCTTCCTCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCCTCCCTCCATCTCATCCTCCCTCCATGTCTTCCTCCCTCCC  450

seq1  TCCCTTCCTCCTCCCATCTCTCTGTCTTTTGATCCAGAGAATTAAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTCCTCCCATCTCTCTGTCTTTTGATCCAGAGAATTAAACTCA  500

seq1  AGATCTTATATGTGCTAGGCAAGCTCTCTAGCCCTAAGCCACACCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTATATGTGCTAGGCAAGCTCTCTAGCCCTAAGCCACACCCCTTC  550

seq1  CCATTTAAAAAAAAAATCTGGGTTACCCAGGGTGACCCTGGGCTCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAAAAAAAATCTGGGTTACCCAGGGTGACCCTGGGCTCTTGTT  600

seq1  CAAGCTCTGAAACTTGCAACAGAACCTGTGGTCAGAGGGTTCCTTGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGAAACTTGCAACAGAACCTGTGGTCAGAGGGTTCCTTGGCTA  650

seq1  AATAGGAAATTGCTTTGTCTCCTGTTCACCTTTGTCTGAGTGCGGATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAATTGCTTTGTCTCCTGTTCACCTTTGTCTGAGTGCGGATGCC  700

seq1  TCTGTCCGTAGGGTTCTATACACTGCCCGGTATTTTCTGGGACCGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCGTAGGGTTCTATACACTGCCCGGTATTTTCTGGGACCGTTTGA  750

seq1  CTTTCCTGGTGGCCCTATCCAGATGACTGACATTAAGGGTTGGCAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGTGGCCCTATCCAGATGACTGACATTAAGGGTTGGCAGGTTC  800

seq1  CTGTAATTCTAATGGGAATCA-TTCCTCGCCCCACTGAATGTGAGATCTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTAATTCTAATGGGAATCATTTCCTCGCCCCACTGAATGTGAGATCTG  850

seq1  CTTCATTTAATCCATTCCTTCCAGTTTGGGATTGGGTTC-TAGAATTGTA  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCATTTAATCCATTCCTTCCAGTTTGGGATTGGGTTCTTAGAATTGTA  900

seq1  GGGCAAATGCTGAAAATAGGGTGGCTTTTGGTGACAA-TAATGTTGGCTT  947
      ||||||||||||||||||||||||| ||||||||||| || |||||||||
seq2  GGGCAAATGCTGAAAATAGGGTGGCCTTTGGTGACAATTATTGTTGGCTT  950

seq1  TGTCAGTCACCCTTAAACTGGGGAG-ACAGCACTTTTCCAGGTAGGGATT  996
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TGTCAGTCACCCTT-AACTGGGGAGAACAGCACTTTTCCAGGTAGGGATT  999

seq1  CAGCTGGCACATCCCAGTCAAGAACACAGCATTGGCCCTCCTGTGTCTGA  1046
      ||||| |||||||||||||||| |||||||||||| ||| ||||||||| 
seq2  CAGCT-GCACATCCCAGTCAAG-ACACAGCATTGGTCCT-CTGTGTCTG-  1045

seq1  ACATTGCTTGAGGGTGAGAAATCAGGAGTGACTTCTATTAGGGATTCCGG  1096
      ||||||| ||| |||||||| ||| ||   ||||||||  || ||||  |
seq2  ACATTGC-TGAAGGTGAGAATTCA-GATGAACTTCTATAGGGAATTC--G  1091

seq1  TACTCCTCTTGGGCAGCCCTTCGTGTGGGTGAATTTAACATCTGCCCACA  1146
      |||||||| ||| ||| || || ||| |||||  ||||| |||||   ||
seq2  TACTCCTC-TGGCCAGGCCCTCCTGT-GGTGA--TTAAC-TCTGC---CA  1133

seq1  TGCACATCATTTCCTTTGTCTAAAGCTG  1174
      |||||||||||||| |||||||| ||||
seq2  TGCACATCATTTCC-TTGTCTAAGGCTG  1160