BAC Information

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BAC

Clone NameB6Ng01-299B01
Chromosome7 (Build37)
Map Location 6,420,371 - 6,421,547
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336
Downstream geneOlfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B01.bB6Ng01-299B01.g
ACCGA094009GA094010
length9211,178
definitionB6Ng01-299B01.b B6Ng01-299B01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtgccccattttttaatggggttatttgatt
ttctggagtccatcttcttgagttctttatatatattggatattagtccc
ctatctgatttaggaaaggtaaagatcctttgtcccgagctagtgtctcg
tcggcaagaacacactcggacaaccggattcttctacagcaaagctttac
tgcttcatcagaaggaagaccccgaacccggaaaatggcgctgcttatat
aaccctccgtgaggcgtgtcagcacctgatttgttgctcgcccatcacct
cattgctacgccccgggatgggcagtgacttggcatgaatttactcttgc
acctgcgcacattacttgttcaccagttaggcacagcggaggccagcgcc
atcttataatggcaattgctcacggctctccacaatcctttcgcaatctg
tttgtggcctttttgtcttattgacggtgtcttttgctttacagaagctt
tgcaattttatgaggtcccatttgtcaattctcgatcttacagcacaagc
cattgctgttctattcaggaatttttcccctgtgcccatatctttgaggc
ttttccccactttctcctctataagtttcagtgtctctgattttatgtgt
agttccttgatctacttagacttgaccttagtacaaggagataagaatgg
atcaattcacattctacacgataaccgccagttgtgccagcaccactttt
tgaaaatgctgtcttttttccactggatggttttagatcccttgttaaaa
atcgagtgaacataggtgtgtggtttcatttctgtgtcttcaattctatt
ccattggtctacctgactcactataccagtactgtgaggagccgccctca
tagtcgcatttaacaagatgg
gaattcaaggttatctgtgaaaccagaaagaacatgggagaatagatcag
ctggctgggtgtgtgtgtggaaaaataaagggacaaaatggaagaggtga
atatgtttaaacctcatattcaaaagcaattgcctatgtttatctcaata
ctgtgaaataattatatacccataagatatttttaaaaagaaaaaaatag
gcaacaacttcattctggagacaaatatattagttttgtaattccaggac
ctatgcagacagtaatggataagaacctgcttagtgtcatctctgctctt
cattttaataaatctctgtagcagttttttttaagttggcagtatatctc
aagctgagattcataaaattaatttgtagggttaatagcagtattaaaag
gacacggaacagaacatcttcacttatgtctctcataagtgaagacacca
tcaaatctagctgtgtgatgtaaaggtgagtgctatcttgttaaactttt
taaaatgtccttggtgtctatgtatgcatgccattgtgaggtattcacga
cggaaaacactttcttattcttaccatggtaaaagtacttacggagcatg
ctatagcttgccatctctaagtcacccaatgcatgggacacaggtaaaag
gtgaaagctgtgatatagtagtgtctttatgaactaggcatgatggtgca
tgcctgccatcccagggcttgagaagcagaggcagataatcaagactata
tttcactatatagtgagtctgaagccaggacgggcgactttcactctcca
ctcatgctttgaaacatctttgacgctttccaattgtccggtaccatttt
caatcctgtcatcgttcttaagaaaaccagtcagggtcatacggcatctt
acgttattagagagggaaaggtcatataaagaagctttcaaggagaagtt
atatcagctgcaggagtatacagggaaaggaagagagggaaatgactaag
ggataagtggacctgacgagaatcaatggaggagaaagtattgtagtgaa
gattacagtcgctagtttcagaatcacgttcagctccttagggagttcag
tgaggagactaccagggtacagtctcaggatccatccaggcctcagtcac
gagcacacagctccaagggccaattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6420371_6421547
seq2: B6Ng01-299B01.g_67_1244

seq1  GAATTCAAGGTTATCTGTGAAACCAGAAAGAACATGGGAGAATAGATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTATCTGTGAAACCAGAAAGAACATGGGAGAATAGATCAG  50

seq1  CTGGCTGGGTGTGTGTGTGGAAAAATAAAGGGACAAAATGGAAGAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGGTGTGTGTGTGGAAAAATAAAGGGACAAAATGGAAGAGGTGA  100

seq1  ATATGTTTAAACCTCATATTCAAAAGCAATTGCCTATGTTTATCTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTAAACCTCATATTCAAAAGCAATTGCCTATGTTTATCTCAATA  150

seq1  CTGTGAAATAATTATATACCCATAAGATATTTTTAAAAAGAAAAAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATAATTATATACCCATAAGATATTTTTAAAAAGAAAAAAATAG  200

seq1  GCAACAACTTCATTCTGGAGACAAATATATTAGTTTTGTAATTCCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACTTCATTCTGGAGACAAATATATTAGTTTTGTAATTCCAGGAC  250

seq1  CTATGCAGACAGTAATGGATAAGAACCTGCTTAGTGTCATCTCTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGACAGTAATGGATAAGAACCTGCTTAGTGTCATCTCTGCTCTT  300

seq1  CATTTTAATAAATCTCTGTAGCAGTTTTTTTTAAGTTGGCAGTATATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATAAATCTCTGTAGCAGTTTTTTTTAAGTTGGCAGTATATCTC  350

seq1  AAGCTGAGATTCATAAAATTAATTTGTAGGGTTAATAGCAGTATTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGATTCATAAAATTAATTTGTAGGGTTAATAGCAGTATTAAAAG  400

seq1  GACACGGAACAGAACATCTTCACTTATGTCTCTCATAAGTGAAGACACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGAACAGAACATCTTCACTTATGTCTCTCATAAGTGAAGACACCA  450

seq1  TCAAATCTAGCTGTGTGATGTAAAGGTGAGTGCTATCTTGTTAAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTAGCTGTGTGATGTAAAGGTGAGTGCTATCTTGTTAAACTTTT  500

seq1  TAAAATGTCCTTGGTGTCTATGTATGCATGCCATTGTGAGGTATTCACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTCCTTGGTGTCTATGTATGCATGCCATTGTGAGGTATTCACGA  550

seq1  CGGAAAACACTTTCTTATTCTTACCATGGTAAAAGTACTTACGGAGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAACACTTTCTTATTCTTACCATGGTAAAAGTACTTACGGAGCATG  600

seq1  CTATAGCTTGCCATCTCTAAGTCACCCAATGCATGGGACACAGGTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTTGCCATCTCTAAGTCACCCAATGCATGGGACACAGGTAAAAG  650

seq1  GTGAAAGCTGTGATATAGTAGTGTCTTTATGAACTAGGCATGATGGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCTGTGATATAGTAGTGTCTTTATGAACTAGGCATGATGGTGCA  700

seq1  TGCCTGCCATCCCAGGGCTTGAGAAGCAGAGGCAGATAATCAAGACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCATCCCAGGGCTTGAGAAGCAGAGGCAGATAATCAAGACTATA  750

seq1  TTTCACTATATAGTGAGTCTGAAGCCAGGACGGGCGACTTTCACTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTATATAGTGAGTCTGAAGCCAGGACGGGCGACTTTCACTCTCCA  800

seq1  CTCATGCTTTGAAACATCTTTGACGCTTTCCAATTGTCCGGTACCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTTTGAAACATCTTTGACGCTTTCCAATTGTCCGGTACCATTTT  850

seq1  CAATCCTGTCATCGTTCTTAAGAAAACCAGTCAGGGTCATACGGCATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGTCATCGTTCTTAAGAAAACCAGTCAGGGTCATACGGCATCTT  900

seq1  ACGTTATTAGAGAGGG-AAGGTCATATAAAGAAGCTTTC-AGGAGAAGTT  948
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  ACGTTATTAGAGAGGGAAAGGTCATATAAAGAAGCTTTCAAGGAGAAGTT  950

seq1  ATATCAGCTGCAGGGAGTATACAAGGGAAAGGAAGAGAGGGAAATGACCA  998
      |||||||||||| ||||||||| ||||||||||||||||||||||||| |
seq2  ATATCAGCTGCA-GGAGTATAC-AGGGAAAGGAAGAGAGGGAAATGACTA  998

seq1  AGGGATAAGTGGACCTGACGAGGAAATCAATGGAGGAGGAAAAGTA-TGT  1047
      ||||||||||||||||||||||  ||||||||||||||  |||||| |||
seq2  AGGGATAAGTGGACCTGACGAG--AATCAATGGAGGAG--AAAGTATTGT  1044

seq1  AGTGGAAGATTAACAGGCGCTAGTTTCAGAACCACGGTCAGCTC--TA-G  1094
      ||| ||||||| |||| |||||||||||||| |||| |||||||  || |
seq2  AGT-GAAGATT-ACAGTCGCTAGTTTCAGAATCACGTTCAGCTCCTTAGG  1092

seq1  GAGTCCAGTGAGG-GGCTACAAGGCACCAGTCTCAGGAACCCAACACGGC  1143
      |||| |||||||| | |||| |||   |||||||||| | ||| |  |||
seq2  GAGTTCAGTGAGGAGACTACCAGGGTACAGTCTCAGG-ATCCATCCAGGC  1141

seq1  TTCAG-CAACAG-ACACAGCTCC-AGGGCCCATTGAA  1177
       |||| ||  || |||||||||| |||||| ||||||
seq2  CTCAGTCACGAGCACACAGCTCCAAGGGCCAATTGAA  1178