BAC Information

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BAC

Clone NameB6Ng01-299J20
Chromosome7 (Build37)
Map Location 85,080,917 - 85,210,564
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299J20.bB6Ng01-299J20.g
ACCGA094403GA094404
length1,148735
definitionB6Ng01-299J20.b B6Ng01-299J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,209,422 - 85,210,564)(85,080,917 - 85,081,651)
sequence
gaattctctagtgtgttttaaatcaggcctgcaagttcatttggttgtct
ctctatcttggtaatgggagaccctaccatgctgggcttctgcagattaa
aacactcttttcatttatgtttgtgtccagggtatcattttttggtgaat
catggactctatgactagcagctctccaggaatctccaggccttcagcac
caagctggcactgatgaattatccagcctcagaaacaacttggattcttg
gcctctctatggtgagacaactgttgttggactacacagactactgtatc
ctgttcgcctcccaataaatccccttttactactgtattcagtttaccag
gcctgttctgttagagaaccttgattagtacagatagcatcatggcatct
gacttactcaactcaaattcttttaagactcagtgtatatattctttcta
ggaagtcttcccagatccatacctcagttaaacttgatattcatcctctg
tgctcacaaggtattaaaattgtttttcagttttaactggtcattttctt
tgggctcaccaataaaataggtgttttgttaccatatgtcctatcttaat
tggctaaattcaaccaacaccacgccacaggtggttgttcactctccatg
atatgtcaggattttccatattttcaacagtttgtttcttctgcttccag
ctgctgtatatggaatggacaaagctccaatggagggaaggtagtgccca
tctgtccttctcaggccccttcctgtgttgggtatctgccagtagccttc
cacacattcagaaaataagctttcagaatttctcaagcctacctattttt
tttctgtagagatgcccgtttttttttttttcatatattttttattttcc
aacagacatcatttttcttcactctctttaccttctctcaacaaaacatt
ttcctgtggaagttacaaatatatactattatgttcatttagcaggctag
gtagcagtagtgatgacttaagccaaaggtactcatttctagctaggact
cttgcttcaggtaacagtaactggtttatttcgatatttctttcaatatg
ggatgaggggggtacccatgttctctgcctggttagccatttttattt

gaattccatgcaatgaaacatgaccatatttatcctctacactcacactt
caggaccacccccaaacctcccaggaagtagatatacatttcatcctttc
tatagcatccgtagctaaaacactgccctcctacatagaagaaaaacaca
gaaaaattggaaacttgtgagaaggaagacatactggctaggaattcagg
aaaggacagtgggtggatttcatgagatttgttttgctctcacatttgcc
aatgttgggattgaagtgattgccaatcaagaaattacagaaaacctagg
gaggaggtttgtaatataatattattatcaaaatctagtttttaacagga
ataaaaatgatgtgcaaattgcacacagggaatcaatagaaattatctcc
aaggacattttgattttgaattttttaaaggctacaaatcaactactaaa
tatttttttaaaaacttttaaaagggttttacaactaaatgaatgtaaaa
gaacaaggtctttataaaaagagaatatttcaaaagtgatacgtactttg
aaaagaaccaagtagaaatataagcattatgaagaaggaagcaaggatgg
atgaacaggagaaaggaagaaaagagtagttgtggaagagatagatgggg
gaggcaaggagaagagctgaggagaaaagaaacagaaaagaaagagaaga
gaagaggagaggagaggagaggagaggagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85209422_85210564
seq2: B6Ng01-299J20.b_46_1193 (reverse)

seq1  AAATAAAA---GCTTACCA-GCAGAG-ACATGGGTAACACCCCCTCAT-C  44
      ||||||||   ||| |||| |||||| |||||||||   ||||||||| |
seq2  AAATAAAAATGGCTAACCAGGCAGAGAACATGGGTA--CCCCCCTCATCC  48

seq1  CATATGAAAAGGAATATCGAAATAAACAGTTTACTGGTTTACTGAAACCA  94
      |||||  |||| |||||||||||||||   ||||||  ||||   || ||
seq2  CATATTGAAAGAAATATCGAAATAAACCAGTTACTG--TTACCTGAAGCA  96

seq1  AGAGTTCCTAGCTAGAAATGAGTACCTTTGGCTAAAGTCATCACTACTGC  144
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAG-TCCTAGCTAGAAATGAGTACCTTTGGCTTAAGTCATCACTACTGC  145

seq1  TACCTAGCCTGCTAAATGAACATAATAGTATATATTTGTAACTTCCACAG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGCCTGCTAAATGAACATAATAGTATATATTTGTAACTTCCACAG  195

seq1  G-AAATGTTTTGTTGAGAGAAGGTAAAGAGAGTGAAG-AAAATGATGTCT  242
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAAATGTTTTGTTGAGAGAAGGTAAAGAGAGTGAAGAAAAATGATGTCT  245

seq1  GTTGG-AAATAAAAAATATATGAAAAAAAAAAAAACGGGCATCTCTACAG  291
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAATAAAAAATATATGAAAAAAAAAAAAACGGGCATCTCTACAG  295

seq1  -AAAAAAATAGGTAGGCTTGAGAAATTCTGAAAGCTTATTTTCTGAATGT  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAGGTAGGCTTGAGAAATTCTGAAAGCTTATTTTCTGAATGT  345

seq1  GTGGAAGGCTACTGGCAGATACCCAACACAGGAAGGGGCCTGAGAAGGAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGGCTACTGGCAGATACCCAACACAGGAAGGGGCCTGAGAAGGAC  395

seq1  AGATGGGCACTACCTTCCCTCCATTGGAGCTTTGTCCATTCCATATACAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCACTACCTTCCCTCCATTGGAGCTTTGTCCATTCCATATACAG  445

seq1  CAGCTGGAAGCAGAAGAAACAAACTGTTGAAAATATGGAAAATCCTGACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAAGCAGAAGAAACAAACTGTTGAAAATATGGAAAATCCTGACA  495

seq1  TATCATGGAGAGTGAACAACCACCTGTGGCGTGGTGTTGGTTGAATTTAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGAGAGTGAACAACCACCTGTGGCGTGGTGTTGGTTGAATTTAG  545

seq1  CCAATTAAGATAGGACATATGGTAACAAAACACCTATTTTATTGGTGAGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAGATAGGACATATGGTAACAAAACACCTATTTTATTGGTGAGC  595

seq1  CCAAAGAAAATGACCAGTTAAAACTGAAAAACAATTTTAATACCTTGTGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAATGACCAGTTAAAACTGAAAAACAATTTTAATACCTTGTGA  645

seq1  GCACAGAGGATGAATATCAAGTTTAACTGAGGTATGGATCTGGGAAGACT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGGATGAATATCAAGTTTAACTGAGGTATGGATCTGGGAAGACT  695

seq1  TCCTAGAAAGAATATATACACTGAGTCTTAAAAGAATTTGAGTTGAGTAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAAGAATATATACACTGAGTCTTAAAAGAATTTGAGTTGAGTAA  745

seq1  GTCAGATGCCATGATGCTATCTGTACTAATCAAGGTTCTCTAACAGAACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGCCATGATGCTATCTGTACTAATCAAGGTTCTCTAACAGAACA  795

seq1  GGCCTGGTAAACTGAATACAGTAGTAAAAGGGGATTTATTGGGAGGCGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGTAAACTGAATACAGTAGTAAAAGGGGATTTATTGGGAGGCGAA  845

seq1  CAGGATACAGTAGTCTGTGTAGTCCAACAACAGTTGTCTCACCATAGAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACAGTAGTCTGTGTAGTCCAACAACAGTTGTCTCACCATAGAGA  895

seq1  GGCCAAGAATCCAAGTTGTTTCTGAGGCTGGATAATTCATCAGTGCCAGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGAATCCAAGTTGTTTCTGAGGCTGGATAATTCATCAGTGCCAGC  945

seq1  TTGGTGCTGAAGGCCTGGAGATTCCTGGAGAGCTGCTAGTCATAGAGTCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTGAAGGCCTGGAGATTCCTGGAGAGCTGCTAGTCATAGAGTCC  995

seq1  ATGATTCACCAAAAAATGATACCCTGGACACAAACATAAATGAAAAGAGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCACCAAAAAATGATACCCTGGACACAAACATAAATGAAAAGAGT  1045

seq1  GTTTTAATCTGCAGAAGCCCAGCATGGTAGGGTCTCCCATTACCAAGATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATCTGCAGAAGCCCAGCATGGTAGGGTCTCCCATTACCAAGATA  1095

seq1  GAGAGACAACCAAATGAACTTGCAGGCCTGATTTAAAACACACTAGAGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAACCAAATGAACTTGCAGGCCTGATTTAAAACACACTAGAGAA  1145

seq1  TTC  1143
      |||
seq2  TTC  1148


seq1: chr7_85080917_85081651
seq2: B6Ng01-299J20.g_67_801

seq1  GAATTCCATGCAATGAAACATGACCATATTTATCCTCTACACTCACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAATGAAACATGACCATATTTATCCTCTACACTCACACTT  50

seq1  CAGGACCACCCCCAAACCTCCCAGGAAGTAGATATACATTTCATCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCACCCCCAAACCTCCCAGGAAGTAGATATACATTTCATCCTTTC  100

seq1  TATAGCATCCGTAGCTAAAACACTGCCCTCCTACATAGAAGAAAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATCCGTAGCTAAAACACTGCCCTCCTACATAGAAGAAAAACACA  150

seq1  GAAAAATTGGAAACTTGTGAGAAGGAAGACATACTGGCTAGGAATTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGGAAACTTGTGAGAAGGAAGACATACTGGCTAGGAATTCAGG  200

seq1  AAAGGACAGTGGGTGGATTTCATGAGATTTGTTTTGCTCTCACATTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAGTGGGTGGATTTCATGAGATTTGTTTTGCTCTCACATTTGCC  250

seq1  AATGTTGGGATTGAAGTGATTGCCAATCAAGAAATTACAGAAAACCTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGATTGAAGTGATTGCCAATCAAGAAATTACAGAAAACCTAGG  300

seq1  GAGGAGGTTTGTAATATAATATTATTATCAAAATCTAGTTTTTAACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTTTGTAATATAATATTATTATCAAAATCTAGTTTTTAACAGGA  350

seq1  ATAAAAATGATGTGCAAATTGCACACAGGGAATCAATAGAAATTATCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGATGTGCAAATTGCACACAGGGAATCAATAGAAATTATCTCC  400

seq1  AAGGACATTTTGATTTTGAATTTTTTAAAGGCTACAAATCAACTACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATTTTGATTTTGAATTTTTTAAAGGCTACAAATCAACTACTAAA  450

seq1  TATTTTTTTAAAAACTTTTAAAAGGGTTTTACAACTAAATGAATGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAAAAACTTTTAAAAGGGTTTTACAACTAAATGAATGTAAAA  500

seq1  GAACAAGGTCTTTATAAAAAGAGAATATTTCAAAAGTGATACGTACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGTCTTTATAAAAAGAGAATATTTCAAAAGTGATACGTACTTTG  550

seq1  AAAAGAACCAAGTAGAAATATAAGCATTATGAAGAAGGAAGCAAGGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCAAGTAGAAATATAAGCATTATGAAGAAGGAAGCAAGGATGG  600

seq1  ATGAACAGGAGAAAGGAAGAAAAGAGTAGTTGTGGAAGAGATAGATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGGAGAAAGGAAGAAAAGAGTAGTTGTGGAAGAGATAGATGGGG  650

seq1  GAGGCAAGGAGAAGAGCTGAGGAGAAAAGAAACAGAAAAGAAAGAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGGAGAAGAGCTGAGGAGAAAAGAAACAGAAAAGAAAGAGAAGA  700

seq1  GAAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA  735
      |||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA  735


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