BAC Information

Click to search

BAC

Clone NameB6Ng01-299M24
Chromosome7 (Build37)
Map Location 35,117,192 - 35,203,214
singlet/doubletdoublet
Overlap geneLsm14a
Upstream geneAbpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734
Downstream geneLOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M24.bB6Ng01-299M24.g
ACCGA094552GA094553
length478176
definitionB6Ng01-299M24.b B6Ng01-299M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,117,192 - 35,117,669)(35,203,041 - 35,203,214)
sequence
gaattcaattactagcaaccacatggtggctcacaatcatctgcaatggg
atgccctcttccagtgtgtctgaaaacagcaacagcatcttcacatatat
aaaataaatcttgaaaaaaaaaggcatgcaccgccactacttgcctaaaa
taaatattttaaaccagctgtggttgcaaaggcaggtgggaagtggatgc
tcacagtcatctattggatggaacacagggcccccaatggaggagctaga
gaaagctcccaaggagctgaaggggtccgcaccctataggtagaacaaca
atatgaactaaccagtaacccccagagctcatgtctctagctgcatatgt
agcagaagatggcctagtcagccatcattgggaagagaggccccttggtc
ttgcaaactttatatgccccagtacaggggaatgccagggccaagaagta
ggagtgggtagataggggagtgggtggg
gaattcctagaggttttggcacctgtttcaacctaactacgtcttctgtc
tggtggcactgtccacctccaccacaaaaaatatttgtttttattatttt
taggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagag
agagagagaatgagagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_35117192_35117669
seq2: B6Ng01-299M24.b_44_521

seq1  GAATTCAATTACTAGCAACCACATGGTGGCTCACAATCATCTGCAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTACTAGCAACCACATGGTGGCTCACAATCATCTGCAATGGG  50

seq1  ATGCCCTCTTCCAGTGTGTCTGAAAACAGCAACAGCATCTTCACATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTCCAGTGTGTCTGAAAACAGCAACAGCATCTTCACATATAT  100

seq1  AAAATAAATCTTGAAAAAAAAAGGCATGCACCGCCACTACTTGCCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATCTTGAAAAAAAAAGGCATGCACCGCCACTACTTGCCTAAAA  150

seq1  TAAATATTTTAAACCAGCTGTGGTTGCAAAGGCAGGTGGGAAGTGGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTAAACCAGCTGTGGTTGCAAAGGCAGGTGGGAAGTGGATGC  200

seq1  TCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCATCTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGA  250

seq1  GAAAGCTCCCAAGGAGCTGAAGGGGTCCGCACCCTATAGGTAGAACAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCCCAAGGAGCTGAAGGGGTCCGCACCCTATAGGTAGAACAACA  300

seq1  ATATGAACTAACCAGTAACCCCCAGAGCTCATGTCTCTAGCTGCATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTAACCAGTAACCCCCAGAGCTCATGTCTCTAGCTGCATATGT  350

seq1  AGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTC  400

seq1  TTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTA  450

seq1  GGAGTGGGTAGATAGGGGAGTGGGTGGG  478
      ||||||||||||||||||||||||||||
seq2  GGAGTGGGTAGATAGGGGAGTGGGTGGG  478

seq1: chr7_35203041_35203214
seq2: B6Ng01-299M24.g_64_239 (reverse)

seq1  CTCTCTCTCTCTCTC--TCTCTCTCTCTCTCTCTCTCTCTCACACACACA  48
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCATTCTCTCTCTCTCTCTCTCTCTCTCACACACACA  50

seq1  CACACACACACACACACACACTCCTAAAAATAATAAAAACAAATATTTTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACTCCTAAAAATAATAAAAACAAATATTTTT  100

seq1  TGTGGTGGAGGTGGACAGTGCCACCAGACAGAAGACGTAGTTAGGTTGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGAGGTGGACAGTGCCACCAGACAGAAGACGTAGTTAGGTTGAA  150

seq1  ACAGGTGCCAAAACCTCTAGGAATTC  174
      ||||||||||||||||||||||||||
seq2  ACAGGTGCCAAAACCTCTAGGAATTC  176