BAC Information

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BAC

Clone NameB6Ng01-299N11
Chromosome7 (Build37)
Map Location 38,259,289 - 38,330,479
singlet/doubletdoublet
Overlap geneZfp536
Upstream geneTshz3, LOC100043874
Downstream geneLOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299N11.bB6Ng01-299N11.g
ACCGA094572GA094573
length3851,107
definitionB6Ng01-299N11.b B6Ng01-299N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,259,289 - 38,259,679)(38,329,388 - 38,330,479)
sequence
caggaacctatgaggctctgaccttgtatttcacagtcgtctttccagac
gactttcctgtgcactgactgtggcatggtgacatgaggaaacacaactt
tccatcacactgctggaaagtaagactggaaccaccttagtgctaaaggg
acaagggcaacttaaaggccttgggccgtgcccgtgcttcttcgtaatac
cttccactggatactcatctgatctgggggcgtctgccccaggcgcttag
gtgtctgccatcttaattcctccctgcacttctgtcggtggaggagaaac
atctgttgtaaaagataagccacagctgttccatctcttttgcctgtggt
gttgtgaggagatgggaaggggtacctccctgtgc

gaattcacctggagtgctgggccaggagcccctctccgactttggagaag
aggaggccaggactgtgtcctcggggattctgacatctctgctgtgtcct
gctgggcacagtctccccatcccctgagctccatggatggcagaaaggat
ttctgcaaagtagagaattcccagtcctcatcatggtcaaggacagtggt
gatagaaatgtgactcttgcccttcactccagagcactgtctgctgcagg
aggagtctgatgtcagccaggtgcatagtcttcctccataaataccatgc
cgtaagacatagtagtagaggctggacatcttggcactggggtggttgag
gcaggagaatcactgtgagtctgaggctttcctaggcaacataggatgac
tgtctcaaaaacaaacaaacaaacaaacaaacaaacaaacaaacacctgt
ctaccgcattaaccaaagaaaaatagccagttttactaatacgtttaaaa
taagttggtttactcatactgccttcctctgtcccaccatctctagtcct
gggcgtctccagtcttgaaaggggctgaagaacagaggatcatgtgtagt
tagggttcacattgaccacgcccccaaggagctgtttctgtggagatccc
tcatgtggtccccatctcttccagagaaagttttatccctgatcctgtga
attagacgccaagaaatatatggtatgaagtcatttgagctgatttaatc
taaacgtcctgtgtgctccaggcacaggtttcagggttggaggatatgag
gtgtatcccagcctcgctctgggctcctggcttctatctgtacctgtctg
cctcaggtgggctgtccgtcccttcctgaggggccagtgaaaggtctaga
gagctctcatcctagaaaatccttgcacatagaggtctcaaggaagtcag
ctggctctgatctcatcatctgaagggatgcagtagagaagccagtttct
tcatgttttaccctcagaataacagtgttcaatacaattcgattgggaag
aataaatgaccactgtccctccaacttaaaaagcccaggttagtgtatat
agcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38259289_38259679
seq2: B6Ng01-299N11.b_46_436

seq1  GAATTCCAGGAACCTATGAGGCTCTGACCTTGTATTTCACAGTCGTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAACCTATGAGGCTCTGACCTTGTATTTCACAGTCGTCTTT  50

seq1  CCAGACGACTTTCCTGTGCACTGACTGTGGCATGGTGACATGAGGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACGACTTTCCTGTGCACTGACTGTGGCATGGTGACATGAGGAAACA  100

seq1  CAACTTTCCATCACACTGCTGGAAAGTAAGACTGGAACCACCTTAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCCATCACACTGCTGGAAAGTAAGACTGGAACCACCTTAGTGCT  150

seq1  AAAGGGACAAGGGCAACTTAAAGGCCTTGGGCCGTGCCCGTGCTTCTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACAAGGGCAACTTAAAGGCCTTGGGCCGTGCCCGTGCTTCTTCG  200

seq1  TAATACCTTCCACTGGATACTCATCTGATCTGGGGGCGTCTGCCCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTTCCACTGGATACTCATCTGATCTGGGGGCGTCTGCCCCAGGC  250

seq1  GCTTAGGTGTCTGCCATCTTAATTCCTCCCTGCACTTCTGTCGGTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGTGTCTGCCATCTTAATTCCTCCCTGCACTTCTGTCGGTGGAGG  300

seq1  AGAAACATCTGTTGTAAAAGATAAGCCACAGCTGTTCCATCTCTTTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCTGTTGTAAAAGATAAGCCACAGCTGTTCCATCTCTTTTGCC  350

seq1  TGTGGTGTTGTGAGGAGATGGGAAGGGGTACCTCCCTGTGC  391
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTTGTGAGGAGATGGGAAGGGGTACCTCCCTGTGC  391


seq1: chr7_38329388_38330479
seq2: B6Ng01-299N11.g_67_1173 (reverse)

seq1  ATTTGC--TATACACTA--CT-GGCTTTTTA--GTGGA-GGACAGTGGTC  42
      ||||||  |||||||||  || |||||||||   |||| |||||||||||
seq2  ATTTGCTATATACACTAACCTGGGCTTTTTAAGTTGGAGGGACAGTGGTC  50

seq1  ATTTAATCCTCCC-ATCG-ATTGTATTG-ACACTGTTATTCTGAGG--TA  87
      ||||| || |||| |||| ||||||||| |||||||||||||||||   |
seq2  ATTTATTCTTCCCAATCGAATTGTATTGAACACTGTTATTCTGAGGGTAA  100

seq1  AACATGAAGAAACT-GCCTCTCTACTGCATCCC-TCAGATGATGAGATCA  135
      |||||||||||||| || ||||||||||||||| ||||||||||||||||
seq2  AACATGAAGAAACTGGCTTCTCTACTGCATCCCTTCAGATGATGAGATCA  150

seq1  GAGCCAGCTGACTTCCCTGAGACCTCTATGTGCAAGGATTTTCTAGGATG  185
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTGACTTCCTTGAGACCTCTATGTGCAAGGATTTTCTAGGATG  200

seq1  AGAGCTCTCTAGACCTTTCACTGGCCCCTCAGGAAGGGACGGACAGCCCA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTCTAGACCTTTCACTGGCCCCTCAGGAAGGGACGGACAGCCCA  250

seq1  CCTGAGGCAGACAGGTACAGATAGAAGCCAGGAGCCCAGAGCGAGGCTGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGCAGACAGGTACAGATAGAAGCCAGGAGCCCAGAGCGAGGCTGG  300

seq1  GATACACCTCATATCCTCCAACCCTGAAACCTGTGCCTGGAGCACACAGG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACCTCATATCCTCCAACCCTGAAACCTGTGCCTGGAGCACACAGG  350

seq1  ACGTTTAGATTAAATCAGCTCAAATGACTTCATACCATATATTTCTTGGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAGATTAAATCAGCTCAAATGACTTCATACCATATATTTCTTGGC  400

seq1  GTCTAATTCACAGGATCAGGGATAAAACTTTCTCTGGAAGAGATGGGGAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTCACAGGATCAGGGATAAAACTTTCTCTGGAAGAGATGGGGAC  450

seq1  CACATGAGGGATCTCCACAGAAACAGCTCCTTGGGGGCGTGGTCAATGTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGGGATCTCCACAGAAACAGCTCCTTGGGGGCGTGGTCAATGTG  500

seq1  AACCCTAACTACACATGATCCTCTGTTCTTCAGCCCCTTTCAAGACTGGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAACTACACATGATCCTCTGTTCTTCAGCCCCTTTCAAGACTGGA  550

seq1  GACGCCCAGGACTAGAGATGGTGGGACAGAGGAAGGCAGTATGAGTAAAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCCAGGACTAGAGATGGTGGGACAGAGGAAGGCAGTATGAGTAAAC  600

seq1  CAACTTATTTTAAACGTATTAGTAAAACTGGCTATTTTTCTTTGGTTAAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTATTTTAAACGTATTAGTAAAACTGGCTATTTTTCTTTGGTTAAT  650

seq1  GCGGTAGACAGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTAGACAGGTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTT  700

seq1  TGAGACAGTCATCCTATGTTGCCTAGGAAAGCCTCAGACTCACAGTGATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTCATCCTATGTTGCCTAGGAAAGCCTCAGACTCACAGTGATT  750

seq1  CTCCTGCCTCAACCACCCCAGTGCCAAGATGTCCAGCCTCTACTACTATG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCAACCACCCCAGTGCCAAGATGTCCAGCCTCTACTACTATG  800

seq1  TCTTACGGCATGGTATTTATGGAGGAAGACTATGCACCTGGCTGACATCA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACGGCATGGTATTTATGGAGGAAGACTATGCACCTGGCTGACATCA  850

seq1  GACTCCTCCTGCAGCAGACAGTGCTCTGGAGTGAAGGGCAAGAGTCACAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCCTGCAGCAGACAGTGCTCTGGAGTGAAGGGCAAGAGTCACAT  900

seq1  TTCTATCACCACTGTCCTTGACCATGATGAGGACTGGGAATTCTCTACTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACCACTGTCCTTGACCATGATGAGGACTGGGAATTCTCTACTT  950

seq1  TGCAGAAATCCTTTCTGCCATCCATGGAGCTCAGGGGATGGGGAGACTGT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATCCTTTCTGCCATCCATGGAGCTCAGGGGATGGGGAGACTGT  1000

seq1  GCCCAGCAGGACACAGCAGAGATGTCAGAATCCCCGAGGACACAGTCCTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAGGACACAGCAGAGATGTCAGAATCCCCGAGGACACAGTCCTG  1050

seq1  GCCTCCTCTTCTCCAAAGTCGGAGAGGGGCTCCTGGCCCAGCACTCCAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTTCTCCAAAGTCGGAGAGGGGCTCCTGGCCCAGCACTCCAGG  1100

seq1  TGAATTC  1092
      |||||||
seq2  TGAATTC  1107


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