BAC Information

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BAC

Clone NameB6Ng01-301M10
Chromosome7 (Build37)2 (Build37)
Map Location 63,949,081 - 63,949,643158,165,152 - 158,166,265
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
Downstream geneLOC100040839, Gabrg3, Gabra5, Gabrb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M10.bB6Ng01-301M10.g
ACCGA096001GA096002
length1,0361,116
definitionB6Ng01-301M10.b B6Ng01-301M10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,949,081 - 63,949,643)(158,165,152 - 158,166,265)
sequence
gaattcctggcgtctccccttcccgcctcttgaaagcagggtcctttaca
aatatcattgcataggaggagcaatatctggcaggtcctgtgtacacagc
tctgtgtttcttccgatgtttggaaggcaatgtctcctagctgggcagat
agcgtgaggatctgcttacaaaaaattgatgagggaaaaaaaaggaagga
aggaaggaagaaagaaaggaaacaaggaaagaaggaagaaaggaaatgag
ccctcaggaggataggaggatcccgatttttagacttccataaaatccag
gggattggggtggggcgtgagaaaccttgagcctctgaagtccacccccc
tctgttcaccatggagaccgggccactcccactcggggcctgaggctgct
gcagaacttcacagccctgcatgcaaagctgaactacattgcaggagggg
agggatgggggtgctgatttcttcatcttttactttattctggttatttt
cctcattctctcttgctgtggtggtgaaaagtcctctgtagtaatgcatt
atattaaaaatatttcttatattttaacagaatgatacttttgctgaacc
ttcctcaatattacaccttgaggtcacttatgacttaagtctgctattcc
attgtatactgagcctgctttttaaaacctgtctttaagagaacaatcaa
gtttactttacttggattccccatgtaatcaactttttataacctaagct
aatgcatagttggtaatcttaaggacttaaggtactcttccatgcccctg
acccaagaacaatacttctagaaaacaaaataggttaaaaccagtattat
taaatgaagatccattcataaatgttaaaagcaaaatatagaattatttt
ttgataaacaatgatgtttgcatactgtttgttatcagggttagttgggg
gtcagttggcacgagaaactttcaccccataactgtaaaagatttatgta
aaatattaacttttcctcttccatgtattgcctttc
gaattcaactcataaggacataaagagagcagcaaaatatatgtgagaaa
agacggattgaaaacaggaagaaacgaatgaatcccggtccttcactaaa
ataaataagattaactgaagagctgcgttctgggccacagcctctagagg
gcgccacgaggcagcctaaggagggccaaaacaatatactcagaggaagt
ccaattagcatggaggacagaagaataaacacaagacagttaatatgcat
tttaattgcataaataatgcatgggtgcatatttactggagatagaagtc
aaataaaaagaataggcagagcaaaatgcagaggccctctttacagggtc
tccagggccgccatggcagattgccccaacctgggtgattggtgactaga
agcagagatggaggccttggaagggacccattcttcagaggccgctctcc
ttggcctcatgctgttgtctccctgggcgtaagcacccgggtgtctctgc
tcacctgtatttcctctactcctgcttggtgagattggaccaggtgcccc
gattgctggattttaattcagtcaaattcccaaaggctatatgtctccaa
tcacagtcccattctgaggtgcacggtggaggtgggcagaggggtgaggc
cagagcttccacttggaagatcacagatcagctagtgacactgtcttcca
cggggatcgcttcgacttctagaaatctttccaggagtcacgtgattgtc
cacatccgtggggccagcacagtcaaaccaatggctaggtgggttcagca
tcacccgttcctatgtctaagtactatggtcaaatcctgctaagcaacac
tgttctcttagtcaagcaagcgtgttttggtagagaactggaaactagag
tacttaaaacaatgtaatgcgggctggagaggtggctcagcggttaagag
cactgactgctcttcagaggtcctgagttcaaatcacagcaacccatgac
gactgaacaccattttatacctgggatctgatgtctctttctgaccacat
agtgccacatgcagaatagagtacggtatatacattcattaaataaatcc
gaaagaactcattgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63949081_63949643
seq2: B6Ng01-301M10.b_504_1074

seq1  CTGATTTCTTCATCTTTTACTTTATTCTGGTTATTTTCCTCATTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTTCATCTTTTACTTTATTCTGGTTATTTTCCTCATTCTCTCT  50

seq1  TGCTGTGGTGGTGAAAAGTCCTCTGTAGTAATGCATTATATTAAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTGGTGAAAAGTCCTCTGTAGTAATGCATTATATTAAAAATAT  100

seq1  TTCTTATATTTTAACAGAATGATACTTTTGCTGAACCTTCCTCAATATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATTTTAACAGAATGATACTTTTGCTGAACCTTCCTCAATATTA  150

seq1  CACCTTGAGGTCACTTATGACTTAAGTCTGCTATTCCATTGTATACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGGTCACTTATGACTTAAGTCTGCTATTCCATTGTATACTGAG  200

seq1  CCTGCTTTTTAAAACCTGTCTTTAAGAGAACAATCAAGTTTACTTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTTAAAACCTGTCTTTAAGAGAACAATCAAGTTTACTTTACTT  250

seq1  GGATTCCCCATGTAATCAAC-TTTTATAACCTAAGCTAATGCATAGTTGG  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATTCCCCATGTAATCAACTTTTTATAACCTAAGCTAATGCATAGTTGG  300

seq1  TAATCTTAAGGACTTAAGGTACTCTTCCATGCCCCTGACCCAAGAACAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAAGGACTTAAGGTACTCTTCCATGCCCCTGACCCAAGAACAAT  350

seq1  ACTTCTAG-AAACAAAATAGGTTAAAACCAGTATTA-TAAATGAAGATCC  397
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTCTAGAAAACAAAATAGGTTAAAACCAGTATTATTAAATGAAGATCC  400

seq1  A-TCATAAATGTTAAAAGCAAAATATAG-ATTA-TTTTTGATAAACAATG  444
      | |||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  ATTCATAAATGTTAAAAGCAAAATATAGAATTATTTTTTGATAAACAATG  450

seq1  ATGTTTGCAATACTGTTTGTTATCAGGGTTAGTT-GGGGTCAGTTGGCAC  493
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTTTGC-ATACTGTTTGTTATCAGGGTTAGTTGGGGGTCAGTTGGCAC  499

seq1  GAGAAAC-TTCACCCCATAACTGTTAAAGATTTATGTAAAATATTTACTA  542
      ||||||| |||||||||||||||| |||||||||||||||||||| ||| 
seq2  GAGAAACTTTCACCCCATAACTGTAAAAGATTTATGTAAAATATTAACTT  549

seq1  TTCCTCTT-CATGTATTGCTTT  563
      |||||||| |||||||||| ||
seq2  TTCCTCTTCCATGTATTGCCTT  571

seq1: chr2_158165152_158166265
seq2: B6Ng01-301M10.g_66_1181 (reverse)

seq1  AGCATTGAGTTTCTTTTTCGATTTATTTATTGTATGTATATA-CGTACTC  49
      |||| ||||||   |||  |||||||||| || ||||||||| |||||||
seq2  AGCAATGAGTT--CTTTCGGATTTATTTAATGAATGTATATACCGTACTC  48

seq1  TA-TCTGCATGT-GCACTAATGT-GTCAGAAGAGGACATCAGAT-CCAGT  95
      || ||||||||| ||||| |||| |||||||   |||||||||| |||| 
seq2  TATTCTGCATGTGGCACT-ATGTGGTCAGAAAGAGACATCAGATCCCAGG  97

seq1  TAT-AAATGGTTGTCAGTCGTCATGGGTTGCTGTGATTTGAACTCAGGAC  144
      ||| |||||||  |||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGGTGTTCAGTCGTCATGGGTTGCTGTGATTTGAACTCAGGAC  147

seq1  CTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCACCTCTCCAGCCC  194
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCT-GAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCACCTCTCCAGCCC  196

seq1  GCATTACATTGTTTTAAGTACTCTAGTTTTCCAGTTCTCTACCAAAACAT  244
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GCATTACATTGTTTTAAGTACTCTAG-TTTCCAGTTCTCTACCAAAACAC  245

seq1  GCTTGCTTGGCTAAGAGAACAGTGTTGCCTAGTAGGATTTGACCATAGTA  294
      ||||||||| |||||||||||||||||| ||| |||||||||||||||||
seq2  GCTTGCTTGACTAAGAGAACAGTGTTGCTTAGCAGGATTTGACCATAGTA  295

seq1  CTTAGACATAGGAAGGGGTGATGCTGAACCCACCTAGCC-TTGGTTTGAC  343
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CTTAGACATAGGAACGGGTGATGCTGAACCCACCTAGCCATTGGTTTGAC  345

seq1  TGTGCTGGCCCCACGGACGTGGACAATCACGTGACTCCTGGAAAGAATTC  393
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TGTGCTGGCCCCACGGATGTGGACAATCACGTGACTCCTGGAAAGATTTC  395

seq1  TAGAAGTTGAAGCGATCCCCGTGGAAGACAGTGTCACTAGCTGATCTGTG  443
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCGAAGCGATCCCCGTGGAAGACAGTGTCACTAGCTGATCTGTG  445

seq1  ATCTTCCAAGTGGAAGCTCTGGCCTCACCCCTCTGCCCACCTCCACCCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCTTCCAAGTGGAAGCTCTGGCCTCACCCCTCTGCCCACCTCCACCGTG  495

seq1  CACCTCAGAATGGGACTGTGATTGGAGACATATAGCCTTTGGGAATTTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAATGGGACTGTGATTGGAGACATATAGCCTTTGGGAATTTGA  545

seq1  CTGAATTAAAATCCAGCAATCGGGGCACCTGGTCCAATCTCACCAAGCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAAAATCCAGCAATCGGGGCACCTGGTCCAATCTCACCAAGCAG  595

seq1  GAGTAGAGGAAATACAGGTGAGCAGAGACACCCGGGTGCTTACGCCCAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGGAAATACAGGTGAGCAGAGACACCCGGGTGCTTACGCCCAGG  645

seq1  GAGACAACAGCATGAGGCCAAGGAGAGCGGCCTCTGAAGAATGGGTCCCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAACAGCATGAGGCCAAGGAGAGCGGCCTCTGAAGAATGGGTCCCT  695

seq1  TCCAAGGCCTCCATCTCTGCTTCTAGTCACCAATCACCCAGGCTGGGGCA  743
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCAAGGCCTCCATCTCTGCTTCTAGTCACCAATCACCCAGGTTGGGGCA  745

seq1  ATCTGCCATGGCGGCCCTGGAGACCCTGTAAAGAGGGCCTCTGCATTTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCATGGCGGCCCTGGAGACCCTGTAAAGAGGGCCTCTGCATTTTG  795

seq1  CTCTGCCTATTCTTTTTATTTGACTTCTATCTCCAGTAAATATGCACCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTATTCTTTTTATTTGACTTCTATCTCCAGTAAATATGCACCCA  845

seq1  TGCATTATTTATGCAATTAAAATGCATATTAACTGTCTTGTGCTTATTCT  893
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCATTATTTATGCAATTAAAATGCATATTAACTGTCTTGTGTTTATTCT  895

seq1  TCTGTCCTCCATGCTAATTGGACTTCCTCTGAGTATATTGTTTTGGCCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCCATGCTAATTGGACTTCCTCTGAGTATATTGTTTTGGCCCT  945

seq1  CCTTAGGCTGCCTCGTGGCGCCCTCTAGAGGCTGTGGCCCAGAACGCAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCTGCCTCGTGGCGCCCTCTAGAGGCTGTGGCCCAGAACGCAGC  995

seq1  TCTTCAGTTAATCTTATTTATTTTAGTGAAGGACCGGGATTCATTCGTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTTAATCTTATTTATTTTAGTGAAGGACCGGGATTCATTCGTTT  1045

seq1  CTTCCTGTTTTCAATCCGTCTTTTCTCACATCTATTTTGCTGCTCTCTTT  1093
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCCTGTTTTCAATCCGTCTTTTCTCACATATATTTTGCTGCTCTCTTT  1095

seq1  ATGTCTTTATGAGTTGAATTC  1114
      ||||| |||||||||||||||
seq2  ATGTCCTTATGAGTTGAATTC  1116