BAC Information

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BAC

Clone NameB6Ng01-302E14
Chromosome3 (Build37)7 (Build37)
Map Location 94,664,260 - 94,664,9137,607,779 - 7,607,908
singlet/doubletsingletsinglet
Overlap genePogz
Upstream geneEG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
Downstream genePsmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E14.bB6Ng01-302E14.g
ACCGA096375GA096376
length654940
definitionB6Ng01-302E14.b B6Ng01-302E14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,664,260 - 94,664,913)(7,607,779 - 7,607,908)
sequence
gaattcaaagtcccactcacctgggtagtgatgaagataggttgtgaggc
cacaggggagctagtcacatgattggcattctgcatgacctggacaggtc
tcaatactggttgagtaaccattgttcccagacctggtgctgggttttgg
gtgaggatgagtggctgtccaccttgctggaccaaagtattaccagctaa
agggtaaaaggcagacaacacaaaggaaaacagaacaagaaagggatgtt
agaaacattgctaaatttgtattaataagaaacattattatttcagctaa
gaaacagtgtctcagatatcaaaaccatttaactgctactactcacctca
gcttacggcaccaaactcactccaacttaagcgtcacccaactctacagc
taacacaagacaagtgagtcagggtagttcactaacccacccatgccttg
cctaaggctgaaaggcaccagttcctagcttcacactaatgagctaagtt
accacatacttctctcccccgaatcagcagagccaaaaagggaagacttt
ccatattttaagtaaaatctttttgtaagaaggtaatttgttgttagcta
atcctcttttaaactttttttttacatttactgataaatgtgtgtgtgtg
tgta
gaattccatacaagtacttgcatctaccagggcattcctttcagtcatag
ggcctggcagagcagaatgagcccgaatatgctgaataaaaaattttact
tttcctattccaaatcaagttttgtaattctaacaaaatggcacatacag
ggctggtagatttgatgggtcctgcaacttccaatgcttttactgcattc
actacatatgctaaatcagacactaaattaaaggaattttcaaacctctt
aaatacttctaatacgattttacattcatctagttgctgggtgccaggat
catattgtaataaaacagggttttgataattaaccacataagcgccaaca
cctgttttagaaccatctgtataaatatccaattcacctggtatgggttt
agatgctgtaacctttggaaaaaaatcactggatgttcagtaaaaaattg
taataaaggatctttaggataatgattatctaattccccatcataactac
aacgcaacagagcccattcatcaactaaagagctcagggtctgtatttgg
ttagcattatatggtgtaataattttttttgggggggggctccaaaatgt
tgaatgcatgacttaatgcccaagattgctaaatgggctacagcggtggg
ataatattcaagagttttattaggagacacatgaggataaatccacaata
gtggacctgattgccacaatactccggtcggttggtgaaatgtcttcagg
acacacaaatgtatgtcctctccttctttccatctacataatttagcttt
ttctaagcacctctctacctttcctaaaggcaactcgggcctcaggagtg
agggcacgggggggatgacaattgagggtcaccttttcagcatagcaaag
agtggagttaattcagaatttggtagccttcatatatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94664260_94664913
seq2: B6Ng01-302E14.b_46_699 (reverse)

seq1  TACACACACACACACATTTATCAGTAAATGTAAAAAAAAAGTTTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACATTTATCAGTAAATGTAAAAAAAAAGTTTAAAAGA  50

seq1  GGATTAGCTAACAACAAATTACCTTCTTACAAAAAGATTTTACTTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGCTAACAACAAATTACCTTCTTACAAAAAGATTTTACTTAAAAT  100

seq1  ATGGAAAGTCTTCCCTTTTTGGCTCTGCTGATTCGGGGGAGAGAAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTCTTCCCTTTTTGGCTCTGCTGATTCGGGGGAGAGAAGTATG  150

seq1  TGGTAACTTAGCTCATTAGTGTGAAGCTAGGAACTGGTGCCTTTCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTTAGCTCATTAGTGTGAAGCTAGGAACTGGTGCCTTTCAGCCT  200

seq1  TAGGCAAGGCATGGGTGGGTTAGTGAACTACCCTGACTCACTTGTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGGCATGGGTGGGTTAGTGAACTACCCTGACTCACTTGTCTTGT  250

seq1  GTTAGCTGTAGAGTTGGGTGACGCTTAAGTTGGAGTGAGTTTGGTGCCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGTAGAGTTGGGTGACGCTTAAGTTGGAGTGAGTTTGGTGCCGT  300

seq1  AAGCTGAGGTGAGTAGTAGCAGTTAAATGGTTTTGATATCTGAGACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGGTGAGTAGTAGCAGTTAAATGGTTTTGATATCTGAGACACTG  350

seq1  TTTCTTAGCTGAAATAATAATGTTTCTTATTAATACAAATTTAGCAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCTGAAATAATAATGTTTCTTATTAATACAAATTTAGCAATGT  400

seq1  TTCTAACATCCCTTTCTTGTTCTGTTTTCCTTTGTGTTGTCTGCCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACATCCCTTTCTTGTTCTGTTTTCCTTTGTGTTGTCTGCCTTTTA  450

seq1  CCCTTTAGCTGGTAATACTTTGGTCCAGCAAGGTGGACAGCCACTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGCTGGTAATACTTTGGTCCAGCAAGGTGGACAGCCACTCATCC  500

seq1  TCACCCAAAACCCAGCACCAGGTCTGGGAACAATGGTTACTCAACCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAAACCCAGCACCAGGTCTGGGAACAATGGTTACTCAACCAGTA  550

seq1  TTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCC  600

seq1  TGTGGCCTCACAACCTATCTTCATCACTACCCAGGTGAGTGGGACTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCACAACCTATCTTCATCACTACCCAGGTGAGTGGGACTTTGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654

seq1: chr7_7607779_7607908
seq2: B6Ng01-302E14.g_66_198

seq1  GAATTCCATATGAGTACTTGCATCTACCAGGGTATTCCTTTCAGTCATAG  50
      ||||||||||  |||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCATACAAGTACTTGCATCTACCAGGGCATTCCTTTCAGTCATAG  50

seq1  GGCCTGGCAGAGTAGAATGAACCGGAATATGCTGGATAAAAAA-TTTACT  99
      |||||||||||| ||||||| || |||||||||| |||||||| ||||||
seq2  GGCCTGGCAGAGCAGAATGAGCCCGAATATGCTGAATAAAAAATTTTACT  100

seq1  TTTCCTATTCCAA--CAAGTTTTGTAATTCTAA  130
      |||||||||||||  ||||||||||||||||||
seq2  TTTCCTATTCCAAATCAAGTTTTGTAATTCTAA  133