BAC Information

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BAC

Clone NameB6Ng01-304E02
Chromosome7 (Build37)
Map Location 70,415,749 - 70,416,951
singlet/doubletsinglet
Overlap genenone
Upstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
Downstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304E02.bB6Ng01-304E02.g
ACCGA097857GA097858
length1,1841,181
definitionB6Ng01-304E02.b B6Ng01-304E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggctatttcaaggcaacaaacaaacaaaaatcccaataaaat
caaccaaccaaccaaacaaaacacacttgacaaaaaaaaaaaaaaaaaaa
acattctagagatgactttggtgcccactgtcttttcccaggagcacaca
ggactgggagaaggtgaacctggcctaaccacactcttggtttagcctct
gtacacctaaccatgggaggaacccttcattggctcactagtcccattct
gtttctgtcttcccagatgtgacctttgtggtaaaccttggtgctgagca
gagaagccaaacactaggaaaactgcttgtgaagtgctactcctgcttac
ggccagaagataacaaaagagaaacttggtttctacagttagttcacttt
cttcccttcaagtttctggacatattccccactatttttcttggttttcg
gtgtgcattaaatacgttttttctaaatgaaacagaaaaccgagtcataa
caaatgttcaggtaagttagcaatgattgcaagtcaaatgcagttgccac
agcagccatctaggaaatgctctgaagtgaccctttaaagttcctccaaa
gctcaaccaaagcgcatccctctaagtgaataacgcgccgtgctgattca
atgaaggcttctttgcatttcttccttgttttgccctccaagtaagtaca
cacactcagtactacactataaatctgtttcttctttcaaattgctctta
tttagtgaacttttagctcctctttctctttctcataactgatctattaa
agaatctgggcttctctgcctgtggagtttcctcctgtgtaggttacaag
tgcattgtgcagctcaatacaatctcctgccttgtcaacagtctacaaaa
ggacagctggattcagaggctcagtcggcctgggatcaaacccacccaac
acactgaagttgtgctttgggcctctcatcattattgtagctagattctg
tctttttctgtttctaaattcacatgatactcatgtctggactcatacta
gattgactttacaaaagcatatagacattttacattttgattgtatctta
tgcaataatatgcctttatggctcgaatattgaatctaatttgtgagata
ggcttataattgaagactgttgttctggcctatt
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccacctttctgcatatatttcttactcatattttgtgatat
ttgtgtgtatattatttttttggtgttactataatttgatttttttcccc
atgctggagatcaaatcaaggatgttgcacatgctgcacaattgctgtac
tactgagcttcattcccaatcattggctccctttaaggataagtttcccc
atgcagctcagggtagtctcttacactgccatgcttctgtttcctgattg
atgagatcataggtacaggccgccatgctctatttataaatgatgttttt
aggtttcaatttctcaatgttggatgtaggaaaatagttgacatatatca
atttgtatcttgtggccttgatatactttctcttaagttttggaattgtt
ttgtgaatccacaaaacatacaggatatccatcttctaatgaaatcagta
cctgtttcatttctctttttttcttgttatattgaatcaagtggaatttc
tgatacgatatagaatatacaggtataatgaggtagaatattcttgcctt
gatactaatattaggaggaaacatacagtttcttgtcactaactatgatg
ttgtctatagagttttttaacattccttattaagctgagaaattcctagt
tttctggaaggcatttttcatcaatcacaaatgactgtttaattccagca
atttttcataattatgtatttaattatgcattaaattatagatttttaat
tcagtttattgatgtatggattacatagattaatagaagttttcagtagc
tacacgtgtaaataaatattatttgatcatgctgaacctgcttttatgcg
ttgttaccctcaacttgctagtagtattgtgaatttcttgcaccttgtac
aaatgggaagctaaataagctgctttctaccagtttgtgcaaaggccttt
atctcatttcgaagtggggaaatgctgatatcatagataaggagggtttc
ctgcaatttctatttctggaagaatattctataaaaggtaacacatttcc
ttcgctaaacattgaatgattacctagtgaacatctgtcctctaggaatt
ggaattttggggaaacaggacccattctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_70415749_70416951
seq2: B6Ng01-304E02.b_41_1224

seq1  GAATTCCAGGCTATTTCAAGGCAACAAACAAACAAAAATCCCAATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTATTTCAAGGCAACAAACAAACAAAAATCCCAATAAAAT  50

seq1  CAACCAACCAACCAAACAAAACACACTTGACAAAAAAAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACCAACCAAACAAAACACACTTGACAAAAAAAAAAAAAAAAAAA  100

seq1  ACATTCTAGAGATGACTTTGGTGCCCACTGTCTTTTCCCAGGAGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAGAGATGACTTTGGTGCCCACTGTCTTTTCCCAGGAGCACACA  150

seq1  GGACTGGGAGAAGGTGAACCTGGCCTAACCACACTCTTGGTTTAGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGAGAAGGTGAACCTGGCCTAACCACACTCTTGGTTTAGCCTCT  200

seq1  GTACACCTAACCATGGGAGGAACCCTTCATTGGCTCACTAGTCCCATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTAACCATGGGAGGAACCCTTCATTGGCTCACTAGTCCCATTCT  250

seq1  GTTTCTGTCTTCCCAGATGTGACCTTTGTGGTAAACCTTGGTGCTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTCTTCCCAGATGTGACCTTTGTGGTAAACCTTGGTGCTGAGCA  300

seq1  GAGAAGCCAAACACTAGGAAAACTGCTTGTGAAGTGCTACTCCTGCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCAAACACTAGGAAAACTGCTTGTGAAGTGCTACTCCTGCTTAC  350

seq1  GGCCAGAAGATAACAAAAGAGAAACTTGGTTTCTACAGTTAGTTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAAGATAACAAAAGAGAAACTTGGTTTCTACAGTTAGTTCACTTT  400

seq1  CTTCCCTTCAAGTTTCTGGACATATTCCCCACTATTTTTCTTGGTTTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCAAGTTTCTGGACATATTCCCCACTATTTTTCTTGGTTTTCG  450

seq1  GTGTGCATTAAATACGTTTTTTCTAAATGAAACAGAAAACCGAGTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATTAAATACGTTTTTTCTAAATGAAACAGAAAACCGAGTCATAA  500

seq1  CAAATGTTCAGGTAAGTTAGCAATGATTGCAAGTCAAATGCAGTTGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCAGGTAAGTTAGCAATGATTGCAAGTCAAATGCAGTTGCCAC  550

seq1  AGCAGCCATCTAGGAAATGCTCTGAAGTGACCCTTTAAAGTTCCTCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATCTAGGAAATGCTCTGAAGTGACCCTTTAAAGTTCCTCCAAA  600

seq1  GCTCAACCAAAGCGCATCCCTCTAAGTGAATAACGCGCCGTGCTGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACCAAAGCGCATCCCTCTAAGTGAATAACGCGCCGTGCTGATTCA  650

seq1  ATGAAGGCTTCTTTGCATTTCTTCCTTGTTTTGCCCTCCAAGTAAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTTCTTTGCATTTCTTCCTTGTTTTGCCCTCCAAGTAAGTACA  700

seq1  CACACTCAGTACTACACTATAAATCTGTTTCTTCTTTCAAATTGCTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAGTACTACACTATAAATCTGTTTCTTCTTTCAAATTGCTCTTA  750

seq1  TTTAGTGAACTTTTAGCTCCTCTTTCTCTTTCTCATAACTGATCTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAACTTTTAGCTCCTCTTTCTCTTTCTCATAACTGATCTATTAA  800

seq1  AGAATCTGGGCTTCTCTGCCTGTGGAGTTTCCTCCTGTGTAGGTTACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGGGCTTCTCTGCCTGTGGAGTTTCCTCCTGTGTAGGTTACAAG  850

seq1  TGCATTGTGCAGCTCAATACAATCTCCTGCCTTGTCAACAGTCTACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGCAGCTCAATACAATCTCCTGCCTTGTCAACAGTCTACAAAA  900

seq1  GGACAGCTGGATTCAGAGGCTCAGTCGGCCTGGGATCAAACCCACCCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGGATTCAGAGGCTCAGTCGGCCTGGGATCAAACCCACCCAAC  950

seq1  AACACTGAAAGTTGTGCTTT-GGCCTCTCATCATTATTGTAGCTAGATTC  999
       |||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  -ACACTG-AAGTTGTGCTTTGGGCCTCTCATCATTATTGTAGCTAGATTC  998

seq1  TTGTCTTTTTCTGTTTCTAAATTCACCAATGATACTCAATGTCTGGACTC  1049
       |||||||||||||||||||||||||  ||||||||| ||||||||||||
seq2  -TGTCTTTTTCTGTTTCTAAATTCAC--ATGATACTC-ATGTCTGGACTC  1044

seq1  ATTACTAGATTGAACCTTACAAAAAGCCAATATAGACATGTTACAATTTT  1099
      | |||||||||| || |||| ||||||  |||||||||| |||| |||||
seq2  A-TACTAGATTG-ACTTTAC-AAAAGC--ATATAGACATTTTAC-ATTTT  1088

seq1  GGTTTGTTATCTTAAATGCAATAAATATG-CTTTATGGCTCCAGAATAT-  1147
      | ||   ||||||  ||||||| |||||| |||||||||||  |||||| 
seq2  GATT--GTATCTT--ATGCAAT-AATATGCCTTTATGGCTC--GAATATT  1131

seq1  -GATCTATTTTGGTGAAGATAAGTATATAAAATTGGAAGACTGTGTGTTC  1196
        ||||| ||| ||| ||||| |  |||||   | ||||||||| |||||
seq2  GAATCTAATTT-GTG-AGATAGGCTTATAA---TTGAAGACTGT-TGTTC  1175

seq1  TG--CTATT  1203
      ||  |||||
seq2  TGGCCTATT  1184