BAC Information

Click to search

BAC

Clone NameB6Ng01-304H19
Chromosome7 (Build37)
Map Location 38,969,654 - 39,094,725
singlet/doubletdoublet
Overlap gene1600014C10Rik, Plekhf1, Pop4
Upstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1
Downstream geneLOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H19.bB6Ng01-304H19.g
ACCGA098032GA098033
length1,031896
definitionB6Ng01-304H19.b B6Ng01-304H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,093,707 - 39,094,725)(38,969,654 - 38,970,539)
sequence
gaattcctttttgtaaatacccaggggtggtattacctgggccatatgtt
agatttattttaaattattggaagagcctctcctccactgtgtttctgct
gtgtagtaattctagtaattctagcaaacactcacggacacttttttttg
tgtgtgacagagtttcacaggatagccctagctgttctggaactcacttt
gtagaccaggctggcctcgaactctgaaatccaccagcctcttcctcccg
agtgctgggattaaaggcgtgcaccaccaagcccagctttcctggacaca
tttaaaggtcaatagaatgtctgtacttctggtctgcagctccctcagaa
acttgtggaaatcatgtagccctgaatctcactacctttggacaattctt
taaagatttgtttattttatgtatgtgagtatgctatctacatgtacatc
tacataccagagaacgtatcaaatcccattatagatggttttgagcctcc
atgattttgctgggaattgaactcaggacctctggaagatcacccagtgc
tcttaaccactgagccatctttctagcctgactttggagttttaagcaca
aaaactatatcttgagctgacacattttcagttatcagtaagagttatca
agatgcagaactatagaagtaaaaaggcaaggctaatacatttaggggct
tttcctggatccaggaactatgttcctaggtgtttgatggttaagccttt
cttgtcattttttggcaggtgtaagggtctacatgctggattctaaggtc
agtatggtgtttccagcatggtctcagtttgtgctaaagtctggggccct
gttacaactcctatacatgatgtaaaatctatatccttaccaggtgatac
agaagagttttctccaaactttgacagttgttgccatttctggactcaat
tagtgccaatgaatcacttggtcctttagcttggtgggtagtaattggaa
aggcatacataaccttcagtgaaacacagcc
gaattccagacaggggagtcaaatattgctatttggccaaagacctgttt
tccactcagtttctgtttgtttctccctgcagcctccccttacccacccc
ctacccctgacacatttcctccctctactctggggatttgaatcccagct
tcgtctaagattgctataaagaacatggagccccctgttactctgaggcc
tcctcctctgttcctcacaacttgattggactcaggtcaggctgctgtcc
aaaggtttgagtttttcacctcctctgtgtatgggagccctgctgtcatc
ttccctccagtctgggtgactataggacatcagggctcccagttagcttt
tgtcttccctatggctggcagatggacttccggtgaacaggacctgtttt
gaggacagcattattgaagtcgttctgctcccgtgggaaggtcctgtctt
ctgcgccccccatctcttcctcgcagacagacagaggtggcccctggaaa
gaggagaatggggcgtgttacctttcaatttcttgagcctgaagaattca
gaaagtgaaagctttcacatagactccaggtcccaaacctttctttcacc
acaaaagcctgttgctgccataacttctggaattactcttcaggaaacct
aggccagccttgccttgccttggagactgcagaagcccagctggggcgga
acctttcttgcccggctctcctgccccctgacacttgctaaggagcctgg
cttgtcttctggcaaaggcttgtctgggcgtggtagagattgagaatggc
atgtgcatgtttggaacttttttctttttctgcctccatgggcttttgac
ttaatgttaattcaaacaaattcttggaaggttagataattctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_39093707_39094725
seq2: B6Ng01-304H19.b_46_1076 (reverse)

seq1  GGCTGTGTTTC-CTGAAGGTTATGTA-GCCTTCCCAATTACTA-CCACC-  46
      ||||||||||| |||||||||||||| ||||| |||||||||| ||||| 
seq2  GGCTGTGTTTCACTGAAGGTTATGTATGCCTTTCCAATTACTACCCACCA  50

seq1  AGCTAAA-GAACAAGTGA-TCAATGGCACTAATTGAGTCAAGAAATGGCA  94
      ||||||| || ||||||| ||| |||||||||||||||| ||||||||||
seq2  AGCTAAAGGACCAAGTGATTCATTGGCACTAATTGAGTCCAGAAATGGCA  100

seq1  AACACTGTC-AAGTTTGGAGAAAACTCTTCTGTATCA-CTGGTAAGGATA  142
      |  |||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ACAACTGTCAAAGTTTGGAGAAAACTCTTCTGTATCACCTGGTAAGGATA  150

seq1  TAAGATTTTACATCATGTATAGGAGTTGTAACA-GGCCCCAGACCTTAGC  191
      | ||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  T-AGATTTTACATCATGTATAGGAGTTGTAACAGGGCCCCAGACTTTAGC  199

seq1  AC-AACTGAGACCATGCTGGAAACACCATACTGACCTTAGAATCCAGCAT  240
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAGACCATGCTGGAAACACCATACTGACCTTAGAATCCAGCAT  249

seq1  GTAGACCCTTACACCTGCC-AAAAATGACAAGAAAGGCTTAACCATCAAA  289
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGACCCTTACACCTGCCAAAAAATGACAAGAAAGGCTTAACCATCAAA  299

seq1  CACCTAGG-ACATAGTTCCTGGATCCAGGAAAAGCCCCTAAATGTATTAG  338
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGAACATAGTTCCTGGATCCAGGAAAAGCCCCTAAATGTATTAG  349

seq1  CCTTGCCTTTTTACTTCTATAGTTCTGCATCTTGATAACTCTTACTGATA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTTTTACTTCTATAGTTCTGCATCTTGATAACTCTTACTGATA  399

seq1  ACTG-AAATGTGTCAGCTCAAGATATAGTTTTTGTGCTTAAAACTCCAAA  437
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATGTGTCAGCTCAAGATATAGTTTTTGTGCTTAAAACTCCAAA  449

seq1  GTCAGGCTAGAAAGATGGCTCAGTGGTTAAGAGCACTGGGTGATCTTCCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTAGAAAGATGGCTCAGTGGTTAAGAGCACTGGGTGATCTTCCA  499

seq1  GAGGTCCTGAGTTCAATTCCCAGCAAAATCATGGAGGCTCAAAACCATCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGAGTTCAATTCCCAGCAAAATCATGGAGGCTCAAAACCATCT  549

seq1  ATAATGGGATTTGATACGTTCTCTGGTATGTAGATGTACATGTAGATAGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGATTTGATACGTTCTCTGGTATGTAGATGTACATGTAGATAGC  599

seq1  ATACTCACATACATAAAATAAACAAATCTTTAAAGAATTGTCCAAAGGTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACATACATAAAATAAACAAATCTTTAAAGAATTGTCCAAAGGTA  649

seq1  GTGAGATTCAGGGCTACATGATTTCCACAAGTTTCTGAGGGAGCTGCAGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTCAGGGCTACATGATTTCCACAAGTTTCTGAGGGAGCTGCAGA  699

seq1  CCAGAAGTACAGACATTCTATTGACCTTTAAATGTGTCCAGGAAAGCTGG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTACAGACATTCTATTGACCTTTAAATGTGTCCAGGAAAGCTGG  749

seq1  GCTTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGAAGAGGCTGGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGTGCACGCCTTTAATCCCAGCACTCGGGAGGAAGAGGCTGGT  799

seq1  GGATTTCAGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCAGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACA  849

seq1  GCTAGGGCTATCCTGTGAAACTCTGTCACACACAAAAAAAAGTGTCCGTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCTATCCTGTGAAACTCTGTCACACACAAAAAAAAGTGTCCGTG  899

seq1  AGTGTTTGCTAGAATTACTAGAATTACTACACAGCAGAAACACAGTGGAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGCTAGAATTACTAGAATTACTACACAGCAGAAACACAGTGGAG  949

seq1  GAGAGGCTCTTCCAATAATTTAAAATAAATCTAACATATGGCCCAGGTAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTCTTCCAATAATTTAAAATAAATCTAACATATGGCCCAGGTAA  999

seq1  TACCACCCCTGGGTATTTACAAAAAGGAATTC  1019
      ||||||||||||||||||||||||||||||||
seq2  TACCACCCCTGGGTATTTACAAAAAGGAATTC  1031

seq1: chr7_38969654_38970539
seq2: B6Ng01-304H19.g_70_965

seq1  GAATTCCAGACAGGGGAG-CAAATATTGCTATTTGGCCAAAGACCTGTTT  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGGGGAGTCAAATATTGCTATTTGGCCAAAGACCTGTTT  50

seq1  TCCACTCAGTTTCTGTTTGTTTCTCCCTGCAGCCTCCCCTTACCCACCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCAGTTTCTGTTTGTTTCTCCCTGCAGCCTCCCCTTACCCACCCC  100

seq1  CTACCCCTGACACATTTCCTCCCTCTACTCTGGGGATTTGAATCCCAGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTGACACATTTCCTCCCTCTACTCTGGGGATTTGAATCCCAGCT  150

seq1  TCGTCTAAGATTGCTATAAAGAACATGGAGCCCCCTGTTACTCTGAGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTAAGATTGCTATAAAGAACATGGAGCCCCCTGTTACTCTGAGGCC  200

seq1  TCCTCCTCTGTTCCTCACAACTTGATTGGACTCAGGTCAGGCTGCTGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGTTCCTCACAACTTGATTGGACTCAGGTCAGGCTGCTGTCC  250

seq1  AAAGGTTTGAGTTTTTCACCTCCTCTGTGTATGGGAGCCCTGCTGTCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTGAGTTTTTCACCTCCTCTGTGTATGGGAGCCCTGCTGTCATC  300

seq1  TTCCCTCCAGTCTGGGTGACTATAGGACATCAGGGCTCCCAGTTAGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCAGTCTGGGTGACTATAGGACATCAGGGCTCCCAGTTAGCTTT  350

seq1  TGTCTTCCCTATGGCTGGCAGATGGACTTCCGGTGAACAGGACCTGTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCTATGGCTGGCAGATGGACTTCCGGTGAACAGGACCTGTTTT  400

seq1  GAGGACAGCATTATTGAAGTCGTTCTGCTCCCGTGGGAAGGTCCTGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGCATTATTGAAGTCGTTCTGCTCCCGTGGGAAGGTCCTGTCTT  450

seq1  CTGCGCCCCCCATCTCTTCCTCGCAGACAGACAGAGGTGGCCCCTGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCCCCCATCTCTTCCTCGCAGACAGACAGAGGTGGCCCCTGGAAA  500

seq1  GAGGAGAATGGGGCGTGTTACCTTTCAATTTCTTGAGCCTGAAGAATTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATGGGGCGTGTTACCTTTCAATTTCTTGAGCCTGAAGAATTCA  550

seq1  GAAAGTGAAAGCTTTCACATAGACTCCAGGTCCCAAACCTTTCTTTCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAAAGCTTTCACATAGACTCCAGGTCCCAAACCTTTCTTTCACC  600

seq1  ACAAAAGCCTGTTGCTGCCATAACTTCTGGAATTACTCTTCAGGAAACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCTGTTGCTGCCATAACTTCTGGAATTACTCTTCAGGAAACCT  650

seq1  AGGCCAGCCTTGCCTTGCCTTGGAGACTGCAGAAGCCCAGCTGGGGCGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTTGCCTTGCCTTGGAGACTGCAGAAGCCCAGCTGGGGCGGA  700

seq1  ACCTTTCTTGCCCGGCTCTCCTGCCCCCTGACACTTGCTAAGGAGCCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTGCCCGGCTCTCCTGCCCCCTGACACTTGCTAAGGAGCCTGG  750

seq1  CTTGTCTTCTGGCAAAGGCTTGTCTGGGCGTGGTAGAGATTGAGAATGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCTGGCAAAGGCTTGTCTGGGCGTGGTAGAGATTGAGAATGGC  800

seq1  ATGTGCATG-TTGGAACCTTTT--CTTTTCTG-CTCCATGGGC-TTTGAC  844
      ||||||||| ||||||| ||||   ||||||| |||||||||| ||||||
seq2  ATGTGCATGTTTGGAACTTTTTTCTTTTTCTGCCTCCATGGGCTTTTGAC  850

seq1  TTAATGTT-ATTCAGAGCAAATC-TGGA--GGTAGATAATTCTTTG  886
      |||||||| ||||| |  || || ||||  | ||||||||||||||
seq2  TTAATGTTAATTCAAACAAATTCTTGGAAGGTTAGATAATTCTTTG  896