BAC Information

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BAC

Clone NameB6Ng01-304I10
Chromosome7 (Build37)
Map Location 109,178,854 - 109,307,656
singlet/doubletdoublet
Overlap geneRnf121, Trpc2, Art5, Art1, Chrna10, Nup98
Upstream geneLOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I10.bB6Ng01-304I10.g
ACCGA098060GA098061
length1,1531,137
definitionB6Ng01-304I10.b B6Ng01-304I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,178,854 - 109,180,010)(109,306,513 - 109,307,656)
sequence
gaattcaacactttttctggtctctccaggctcctgcatgtatacatgca
tgcaaaacattcataaacataagattaaaataaatactcaagttctttaa
atttttttccctcttgttgcagggtatttgattgcactgtataacctgag
cagtcaggactgcttgacttcttcagctcatctgtggcaagagggcctga
aacctggtgtagatcttctagaaggcctatgacaacaggaagcaacaagc
cctcattgctagagctgtgcccttgttaacggaagacatgctgaccagaa
cagtactaaatgaaagaacctacatgaccaacaatggagcaggacttagc
tacccacaggataccattctagaactatttccctgaagtctggcaagcgg
aagggcaggcacacaggcagaactacctgtggactgagaacacacggaac
agaacgtgttcctgaaggagtggggcttccaggacagggtgttgcacaca
ctcatcagtgtggactcagcctctcacccctcggctgtccgactacatga
aggtccctgcagtgctctctgttgtgtttcttctcttgaagctcacaggg
ttctagcctaagaatttgcaaaccttttctgttaaggaccagataaatat
tttatattttatggcccaattagtctctatcacaactattcaactctgtt
gcttgagtgcaaaatcagtttcagacagttaacaaattatatgaatgact
atgtcctaagtgtgatggtacaggcccacagtccctgcactgaggaggct
gagtaggaagaggccaagtctgaggtcagtctggactacaatggaaaaca
gtatttgttttattacaacacatgataggctgatttgaccaaaaggtaaa
gtttgctagtcccaggtctgtacagatgaaatttatgaggaactggtttt
ctgcttactcttgttatactttttgcactgataccaatgttggaaaaata
cagccaaacattgatttgggactcttgcctttgttgatactcagaacatt
tccatgttttctgccacttgggaccatgtctctttctagtaccaaggact
tctagacattccttccctaataccagaaaaatgtaacggcagctactcac
ttg
gaattccaatttagccagggcttcacagagaaaaagaaaagtgaaaggtc
aggttgagaagaatctgcacttctttttaatttcttataagaattgtttc
tggatatagaacaaataatagaatagtttgaaagagataaaataagaaag
aatatggaagaattaatgttaagcataggaaaatccacataaatgatgcg
ttaaactaggcaccattaagttatccatgggaaaggccctgaagcaatgt
cagattgctgacattgagagacgggacatctcaattctgggttgcttatt
ctcgatatgcagttagatagacacaggtaggcacacaaacatttttttaa
aggcagtagtagttttttaattgcaaaagtgtatgttttatttttagttc
cttacttagaattctttgttggtaaatgataagttcattacagctccttt
tcttacaaataaatacgggttgggaaaagctgagtgttggtgcacacctt
tgttccagcacggagggagcagaagcaggtggctctctgtgtgcccagtt
ccaggacaggacagccagggctacacagagaaatctttttttgaaaaaac
aaaataaaaaaggggtcagggtgtgactatagtaggctcagtggtttagt
gcactctttgctcttgaagaggatctaagcagtttcacagctgtctctag
ctatagttgcagaggatccagattcatcttctgactttctttggacatca
ggcatgcacagacaaaacatacacataaaataaagctaacaaaactctta
aaattatgggttgagaactctggtgatggttcactggttaagaccatatg
tacaggcctgggaacctgaattcaaagcccaagcacccacataacaagcc
attcaaagccacatacatgtctatagtattgtagtggtagagacaagaaa
gattgctggcatttttcttgtctgtttgcttacctccagacaaatgaaag
accttgtctgaacaagtaattggaaaatgatccagcaggatactagccac
atcttgcttctacatttgctgatgcacatattctcacatggtgcatactt
cccgccacatatcctataagtatttgcgttgtcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109178854_109180010
seq2: B6Ng01-304I10.b_43_1195

seq1  GAATTCAACACTTTTTCTGGTCTCTCCAGGCTCCTGCATGTATACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTTTTTCTGGTCTCTCCAGGCTCCTGCATGTATACATGCA  50

seq1  TGCAAAACATTCATAAACATAAGATTAAAATAAATACTCAAGTTCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACATTCATAAACATAAGATTAAAATAAATACTCAAGTTCTTTAA  100

seq1  ATTTTTTTCCCTCTTGTTGCAGGGTATTTGATTGCACTGTATAACCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCCTCTTGTTGCAGGGTATTTGATTGCACTGTATAACCTGAG  150

seq1  CAGTCAGGACTGCTTGACTTCTTCAGCTCATCTGTGGCAAGAGGGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGACTGCTTGACTTCTTCAGCTCATCTGTGGCAAGAGGGCCTGA  200

seq1  AACCTGGTGTAGATCTTCTAGAAGGCCTATGACAACAGGAAGCAACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGTAGATCTTCTAGAAGGCCTATGACAACAGGAAGCAACAAGC  250

seq1  CCTCATTGCTAGAGCTGTGCCCTTGTTAACGGAAGACATGCTGACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGCTAGAGCTGTGCCCTTGTTAACGGAAGACATGCTGACCAGAA  300

seq1  CAGTACTAAATGAAAGAACCTACATGACCAACAATGGAGCAGGACTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTAAATGAAAGAACCTACATGACCAACAATGGAGCAGGACTTAGC  350

seq1  TACCCACAGGATACCATTCTAGAACTATTTCCCTGAAGTCTGGCAAGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAGGATACCATTCTAGAACTATTTCCCTGAAGTCTGGCAAGCGG  400

seq1  AAGGGCAGGCACACAGGCAGAACTACCTGTGGACTGAGAACACACGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGCACACAGGCAGAACTACCTGTGGACTGAGAACACACGGAAC  450

seq1  AGAACGTGTTCCTGAAGGAGTGGGGCTTCCAGGACAGGGTGTTGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTGTTCCTGAAGGAGTGGGGCTTCCAGGACAGGGTGTTGCACACA  500

seq1  CTCATCAGTGTGGACTCAGCCTCTCACCCCTCGGCTGTCCGACTACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGTGTGGACTCAGCCTCTCACCCCTCGGCTGTCCGACTACATGA  550

seq1  AGGTCCCTGCAGTGCTCTCTGTTGTGTTTCTTCTCTTGAAGCTCACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTGCAGTGCTCTCTGTTGTGTTTCTTCTCTTGAAGCTCACAGGG  600

seq1  TTCTAGCCTAAGAATTTGCAAACCTTTTCTGTTAAGGACCAGATAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTAAGAATTTGCAAACCTTTTCTGTTAAGGACCAGATAAATAT  650

seq1  TTTATATTTTATGGCCCAATTAGTCTCTATCACAACTATTCAACTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATGGCCCAATTAGTCTCTATCACAACTATTCAACTCTGTT  700

seq1  GCTTGAGTGCAAAATCAGTTTCAGACAGTTAACAAATTATATGAATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTGCAAAATCAGTTTCAGACAGTTAACAAATTATATGAATGACT  750

seq1  ATGTCCTAAGTGTGATGGTACAGGCCCACAGTCCCTGCACTGAGGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTAAGTGTGATGGTACAGGCCCACAGTCCCTGCACTGAGGAGGCT  800

seq1  GAGTAGGAAGAGGCCAAGTCTGAGGTCAGTCTGGACTACAAATGGAAAAC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTAGGAAGAGGCCAAGTCTGAGGTCAGTCTGGACTAC-AATGGAAAAC  849

seq1  AGTATTTGTTTTATTACAACACATGATAGGCTGATTTGACCAAAAGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGTTTTATTACAACACATGATAGGCTGATTTGACCAAAAGGTAA  899

seq1  AGTTTGCTAGTCCCAGGTCTGTACAGATGAAA-TTATGAGGAACTGGTTT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTTTGCTAGTCCCAGGTCTGTACAGATGAAATTTATGAGGAACTGGTTT  949

seq1  TCTGCTTACTCTTGTTATAC-TTTTGCACTGAATACCAAATGTTGG-AAA  997
      |||||||||||||||||||| |||||||||| ||||| |||||||| |||
seq2  TCTGCTTACTCTTGTTATACTTTTTGCACTG-ATACC-AATGTTGGAAAA  997

seq1  ATACAAGCAAAACAATGATTTGGGACTCTTGCCTTTGTTGATACTCAG-A  1046
      |||| ||| ||||| ||||||||||||||||||||||||||||||||| |
seq2  ATAC-AGCCAAACATTGATTTGGGACTCTTGCCTTTGTTGATACTCAGAA  1046

seq1  CA-TTCCATGTTTTCTGCCACTTGGGACCATGTTCTCTTTCTTAGTACCC  1095
      || ||||||||||||||||||||||||||||| |||||||| ||||||| 
seq2  CATTTCCATGTTTTCTGCCACTTGGGACCATG-TCTCTTTC-TAGTACCA  1094

seq1  AGGACTTCTAGACATTCCTCCCCAAATACAAGAAAAATGTAAAGGCAAAG  1145
      ||||||||||||||||||| ||| ||||| |||||||||||| ||||   
seq2  AGGACTTCTAGACATTCCTTCCCTAATACCAGAAAAATGTAACGGCA---  1141

seq1  GGTACTCACTTG  1157
      | ||||||||||
seq2  GCTACTCACTTG  1153

seq1: chr7_109306513_109307656
seq2: B6Ng01-304I10.g_67_1203 (reverse)

seq1  TTGTGACAAAGCAATTTACTTATAGGGATATGT-GCGCGAAGTATGCA-C  48
      ||||||||| ||||  |||||||| |||||||| ||| |||||||||| |
seq2  TTGTGACAACGCAA-ATACTTATA-GGATATGTGGCGGGAAGTATGCACC  48

seq1  ATGTGAGAATATTGGTGCATCAGCAAATGTAGAAGCAAGATGTGGGCCTT  98
      ||||||||||||  |||||||||||||||||||||||||||||||  || 
seq2  ATGTGAGAATAT--GTGCATCAGCAAATGTAGAAGCAAGATGTGG--CT-  93

seq1  AGGTATCCTGCTGGATCATTTTCCAATTTACTTTGTTCAGACAAGGTCTT  148
        |||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  -AGTATCCTGCTGGATCATTTTCCAA-TTAC-TTGTTCAGACAAGGTCTT  140

seq1  TCATTTGTCTTGGAGGTAAGCAAACAGACAAG-AAAATGCCAGCAATCTT  197
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  TCATTTGTC-TGGAGGTAAGCAAACAGACAAGAAAAATGCCAGCAATCTT  189

seq1  TC-TGTCTCTACCACTACAATACTATAGACATGTATGTGGCTTTGAATGG  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTCTACCACTACAATACTATAGACATGTATGTGGCTTTGAATGG  239

seq1  CTTGTTATGTGGGTGCTTGGGCTTTGAATTCAGGTTCCCAGGCCTGTACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGTGGGTGCTTGGGCTTTGAATTCAGGTTCCCAGGCCTGTACA  289

seq1  TATGGTCTTAACCAGTGAACCATCACCAGAGTTCTCAACCCATAATTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTTAACCAGTGAACCATCACCAGAGTTCTCAACCCATAATTTTA  339

seq1  AGAGTTTTGTTAGCTTTATTTTATGTGTATGTTTTGTCTGTGCATGCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGTTAGCTTTATTTTATGTGTATGTTTTGTCTGTGCATGCCTG  389

seq1  ATGTCCAAAGAAAGTCAGAAGATGAATCTGGATCCTCTGCAACTATAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAAGAAAGTCAGAAGATGAATCTGGATCCTCTGCAACTATAGCT  439

seq1  AGAGACAGCTGTGAAACTGCTTAGATCCTCTTCAAGAGCAAAGAGTGCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGCTGTGAAACTGCTTAGATCCTCTTCAAGAGCAAAGAGTGCAC  489

seq1  TAAACCACTGAGCCTACTATAGTCACACCCTGACCCCTTTTTTATTTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACTGAGCCTACTATAGTCACACCCTGACCCCTTTTTTATTTTGT  539

seq1  TTTTTCAAAAAAAGATTTCTCTGTGTAGCCCTGGCTGTCCTGTCCTGGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAAAAAGATTTCTCTGTGTAGCCCTGGCTGTCCTGTCCTGGAA  589

seq1  CTGGGCACACAGAGAGCCACCTGCTTCTGCTCCCTCCGTGCTGGAACAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACACAGAGAGCCACCTGCTTCTGCTCCCTCCGTGCTGGAACAAA  639

seq1  GGTGTGCACCAACACTCAGCTTTTCCCAACCCGTATTTATTTGTAAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCACCAACACTCAGCTTTTCCCAACCCGTATTTATTTGTAAGAAA  689

seq1  AGGAGCTGTAATGAACTTATCATTTACCAACAAAGAATTCTAAGTAAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGTAATGAACTTATCATTTACCAACAAAGAATTCTAAGTAAGGA  739

seq1  ACTAAAAATAAAACATACACTTTTGCAATTAAAAAACTACTACTGCCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATAAAACATACACTTTTGCAATTAAAAAACTACTACTGCCTTT  789

seq1  AAAAAAATGTTTGTGTGCCTACCTGTGTCTATCTAACTGCATATCGAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTTTGTGTGCCTACCTGTGTCTATCTAACTGCATATCGAGAA  839

seq1  TAAGCAACCCAGAATTGAGATGTCCCGTCTCTCAATGTCAGCAATCTGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAACCCAGAATTGAGATGTCCCGTCTCTCAATGTCAGCAATCTGAC  889

seq1  ATTGCTTCAGGGCCTTTCCCATGGATAACTTAATGGTGCCTAGTTTAACG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCAGGGCCTTTCCCATGGATAACTTAATGGTGCCTAGTTTAACG  939

seq1  CATCATTTATGTGGATTTTCCTATGCTTAACATTAATTCTTCCATATTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTATGTGGATTTTCCTATGCTTAACATTAATTCTTCCATATTCT  989

seq1  TTCTTATTTTATCTCTTTCAAACTATTCTATTATTTGTTCTATATCCAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTATCTCTTTCAAACTATTCTATTATTTGTTCTATATCCAGA  1039

seq1  AACAATTCTTATAAGAAATTAAAAAGAAGTGCAGATTCTTCTCAACCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCTTATAAGAAATTAAAAAGAAGTGCAGATTCTTCTCAACCTGA  1089

seq1  CCTTTCACTTTTCTTTTTCTCTGTGAAGCCCTGGCTAAATTGGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACTTTTCTTTTTCTCTGTGAAGCCCTGGCTAAATTGGAATTC  1137