BAC Information

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BAC

Clone NameB6Ng01-304M21
Chromosome7 (Build37)7 (Build37)
Map Location 9,012,895 - 9,014,0677,479,221 - 7,479,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128
Downstream geneEG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M21.bB6Ng01-304M21.g
ACCGA098256GA098257
length1,1701,160
definitionB6Ng01-304M21.b B6Ng01-304M21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,012,895 - 9,014,067)(7,479,221 - 7,479,845)
sequence
gaattcaaaaggataaatagtcaaagcccaactaaaacaaacaaacaaaa
tttgtattttgccatttaattttattttctatatacgagtgtcagcttgc
atatacgcataagcatcgaatatatggagtatttatggaggacagaaaaa
ggcatcagatgccatggaataagagtgacaaatggtgtgtgccacaaggg
gaaactgaacctgggtcctctggaaaagcagcaaatggaactgggtttgg
ttgtggtggtgaacacctttaattcctgcattcttaaggcagaggcaaaa
aaaaattaaagaaatgaaatgacctagctggatgtggcagcttacctctt
taacacaaacacataagctaggtgtggtagctcacctctgtaccacaagc
acctaagctgggtgtggcaactcacttctataccactagcaccctggaat
ctctctctctctcacacatacacatacacacacacacacacacacacaca
cacacacacacacacacacacacaacacacacacacacacacacacacac
acacacacacacacacacacaggatcccaaacaaatgtcaaaaaactata
ccccaccagatctgaactcaatgctaacctggtctacagacagagtttca
tggacagccagggagggctacatggagagatcctacctcaaacaacaaca
aaaacaacacaacatcaaacaaaaatacaatgatggtcagaagacataac
actctagcacagtggttctccacctgtgggtcatgatctcttaggggata
tgtaagaccatcagaaacacaaatatttacactaaggttcatgacagtag
tgaaactacagttatgaagtagaaatgataatttatggctggggatcatc
ataactagaggaactgtgataaagggtcttagattagaagtgtgagcacc
actgctcttgcacatggttgcctaagtgaaattcagcatagtgatatgat
tagagggaagcagctacataaatttaatcattctgatcgacatggtaggt
gaaaaaagtgactttttccaattgtactctgacttgccatagtgtaggaa
catacacaccggcgacaacccttttttaaggtgaagatagaaactcatga
aaattattgctcattacaaa
gaattctcacccgaggaataccgaatggatgagaagcacctgaaaaaata
ttcagcatccttaatcattagggaaatgcaaattaaaagaaccctgagtt
tccacctcaaaccattcagaatggctaagttcaaaaattcaggtaacagc
agatgctggcaaggatgtggagaaacaggaacacccctccattgttggtg
ggattgaaagcttgtacaaacactctggaaatcagtctggcagttcctca
gaaaattggacatagtactactgtaggatcctgcaatacttctcctgggc
atatatccagaaaatgttcgaaccggtaagaaggacacatgctccattat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagtggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaacagaatgaaattatgaaattcctatggaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaat
agaacttacatagtatgtactcaatgataagtggatattagcccagaaac
ttagaataccgaagatataagatacaatttgcaaaacacatgaaactcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaactggga
acaaaatacccatggaaggagttaccgagacaaaatttggacttgagatg
aaaggatggaccatctagagactgccatatccgggcatccatcccataat
cagctttcaaacgctgacagcattgcatacactagcaatattttgctgaa
aggaccctgatatagctgtctcttgtgagactattccatttccagcaaac
agactgcttcatacccatctgtatcccctgttacaggaatctaatgcatt
tagggggctctcacaggcatagtatgtacttagtatcatatatatgtgca
gtcgaatactgacacagaaagcaaacacaacacctaaaaacatatggatt
gcactctatgtagagcattagtgcctacacagagctggttccctaccaaa
gtagtgaccaaatagtcatgagatttaagataaatgatccatttatgcca
agggaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9012895_9014067
seq2: B6Ng01-304M21.b_46_1215

seq1  GAATTCAAAAGGATAAATAGTCAAAGCCCAACTAAAACAAACAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGGATAAATAGTCAAAGCCCAACTAAAACAAACAAACAAAA  50

seq1  TTTGTATTTTGCCATTTAATTTTATTTTCTATATACGAGTGTCAGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTGCCATTTAATTTTATTTTCTATATACGAGTGTCAGCTTGC  100

seq1  ATATACGCATAAGCATCGAATATATGGAGTATTTATGGAGGACAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGCATAAGCATCGAATATATGGAGTATTTATGGAGGACAGAAAAA  150

seq1  GGCATCAGATGCCATGGAATAAGAGTGACAAATGGTGTGTGCCACAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATGCCATGGAATAAGAGTGACAAATGGTGTGTGCCACAAGGG  200

seq1  GAAACTGAACCTGGGTCCTCTGGAAAAGCAGCAAATGGAACTGGGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAACCTGGGTCCTCTGGAAAAGCAGCAAATGGAACTGGGTTTGG  250

seq1  TTGTGGTGGTGAACACCTTTAATTCCTGCATTCTTAAGGCAGAGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGGTGAACACCTTTAATTCCTGCATTCTTAAGGCAGAGGCAAAA  300

seq1  AAAAATTAAAGAAATGAAATGACCTAGCTGGATGTGGCAGCTTACCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAAGAAATGAAATGACCTAGCTGGATGTGGCAGCTTACCTCTT  350

seq1  TAACACAAACACATAAGCTAGGTGTGGTAGCTCACCTCTGTACCACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAACACATAAGCTAGGTGTGGTAGCTCACCTCTGTACCACAAGC  400

seq1  ACCTAAGCTGGGTGTGGCAACTCACTTCTATACCACTAGCACCCTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCTGGGTGTGGCAACTCACTTCTATACCACTAGCACCCTGGAAT  450

seq1  CTCTCTCTCTCTCACACATACACATACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCACACATACACATACACACACACACACACACACACACA  500

seq1  CACACACACACACACACACACACAACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAACACACACACACACACACACACACAC  550

seq1  ACACACACACACACACACACAGGATCCCAAACAAATGTCAAAAAACTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAGGATCCCAAACAAATGTCAAAAAACTATA  600

seq1  CCCCACCAGATCTGAACTCAATGCTAACCTGGTCTACAGACAGAGTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCAGATCTGAACTCAATGCTAACCTGGTCTACAGACAGAGTTTCA  650

seq1  TGGACAGCCAGGGAGGGCTACATGGAGAGATCCTACCTCAAACAACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCCAGGGAGGGCTACATGGAGAGATCCTACCTCAAACAACAACA  700

seq1  AAAACAACACAACATCAAACAAAAATACAATGATGGTCAGAAGACATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACACAACATCAAACAAAAATACAATGATGGTCAGAAGACATAAC  750

seq1  ACTCTAGCACAGTGGTTCTCCACCTGTGGGTCATGATCTCTTAGGGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCACAGTGGTTCTCCACCTGTGGGTCATGATCTCTTAGGGGATA  800

seq1  TGTAAGACCATCAGGAAACACAAATATTTACACTAAGGTTCATGACAGTA  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACCATCA-GAAACACAAATATTTACACTAAGGTTCATGACAGTA  849

seq1  GTGAAACTACAGTTATGAAGTAGAAATGATAATTTATGGCTGGGGATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTACAGTTATGAAGTAGAAATGATAATTTATGGCTGGGGATCAT  899

seq1  CATAACTAGAGGAACTGTGATAAAGGGTCTTAGGATTAGAAAGTGTGAGC  950
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  CATAACTAGAGGAACTGTGATAAAGGGTCTTA-GATTAG-AAGTGTGAGC  947

seq1  ACCACTGCTCTTGCACATGGTTGCCTAAAGTGGAAATTCAGCATAAGTGA  1000
      |||||||||||||||||||||||||| |||| |||||||||||| |||||
seq2  ACCACTGCTCTTGCACATGGTTGCCT-AAGT-GAAATTCAGCAT-AGTGA  994

seq1  TATGATAAGAGGGAAAGCAGCTACATAAATTTAATCA-TCTGAATCGACA  1049
      |||||| |||||| ||||||||||||||||||||||| |||| |||||||
seq2  TATGATTAGAGGG-AAGCAGCTACATAAATTTAATCATTCTG-ATCGACA  1042

seq1  TGGTAGGTGAAAAAAAGTGACTTTTCCAAATTGTACTCTGACTTGCATAA  1099
      ||||||||| ||||||||||||||| | ||||||||||||||||||   |
seq2  TGGTAGGTG-AAAAAAGTGACTTTTTCCAATTGTACTCTGACTTGCCATA  1091

seq1  GTGTAGGGACATACACAC--GCG-CACACCTTTTTT-AGGTGA--GTAAG  1143
      ||||||| ||||||||||  ||| ||  |||||||| ||||||   ||  
seq2  GTGTAGGAACATACACACCGGCGACAACCCTTTTTTAAGGTGAAGATAGA  1141

seq1  AACTCATG-AATTTATTGTCTTCATTACAAA  1173
      |||||||| || ||||||   ||||||||||
seq2  AACTCATGAAAATTATTG--CTCATTACAAA  1170

seq1: chr7_7479221_7479845
seq2: B6Ng01-304M21.g_612_1230

seq1  AATCACAATAGAACTTACATAGTATGTACTCAATGATAAGTGGATATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATAGAACTTACATAGTATGTACTCAATGATAAGTGGATATTAG  50

seq1  CCCAGAAACTTAGAATACCGAAGATATAAGATACAATTTGCAAAACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTTAGAATACCGAAGATATAAGATACAATTTGCAAAACACAT  100

seq1  GAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTA  150

seq1  GAACTGGGAACAAAATACCCATGGAAGGAGTTACCGAGACAAAATTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGAACAAAATACCCATGGAAGGAGTTACCGAGACAAAATTTGGA  200

seq1  CTTGAGACGATAGGATGGACCATCTAGAGACTGCCATATCCGGGCATCCA  250
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATGAAAGGATGGACCATCTAGAGACTGCCATATCCGGGCATCCA  250

seq1  TCCCATAATCAGCTTTCAAACGCTGACAGCATTGCATACACTAGCAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATCAGCTTTCAAACGCTGACAGCATTGCATACACTAGCAATAT  300

seq1  TTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATTCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATTCCATTT  350

seq1  CCAGCAAACAGACTGCTTCATACCCATCTGTATCCCCTGTTACAGGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACAGACTGCTTCATACCCATCTGTATCCCCTGTTACAGGAATC  400

seq1  TAATGCATTTAGGGGGCTCTCACAGGCATTAGTTATGTACTTAGTATTCA  450
      |||||||||||||||||||||||||||| ||| ||||||||||||| |||
seq2  TAATGCATTTAGGGGGCTCTCACAGGCA-TAG-TATGTACTTAGTA-TCA  447

seq1  TATATATGTGCAGTCGAAATACTGACACAAGAAACAAACAACAAACACCT  500
      |||||||||||||||| ||||||||||||  || ||||||   |||||||
seq2  TATATATGTGCAGTCG-AATACTGACACAGAAAGCAAACA--CAACACCT  494

seq1  -AAAACATATGGGTTGCACTCCTATGTAAGAGCATTAGGTGCTACACAGA  549
       ||||||||||| ||||||| |||||| ||||||||||   |||||||||
seq2  AAAAACATATGGATTGCACT-CTATGT-AGAGCATTAGTGCCTACACAGA  542

seq1  GCTGGTCCCCAACAAAAGTAGTGACACAATAGTCATGAAGATTTTATAGT  599
      |||||| ||| || |||||||||||  |||||||||| |||||| | | |
seq2  GCTGGTTCCCTACCAAAGTAGTGACCAAATAGTCATG-AGATTTAAGA-T  590

seq1  AAATGAT-CATTTATCCCAAGG--ACTGC  625
      ||||||| ||||||| ||||||  |||||
seq2  AAATGATCCATTTATGCCAAGGGAACTGC  619