BAC Information

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BAC

Clone NameB6Ng01-304O02
Chromosome7 (Build37)
Map Location 5,852,870 - 5,965,151
singlet/doubletdoublet
Overlap geneLOC100041666, V1rd6
Upstream geneLOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
Downstream geneEG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304O02.bB6Ng01-304O02.g
ACCGA098312GA098313
length1,0851,129
definitionB6Ng01-304O02.b B6Ng01-304O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,964,065 - 5,965,151)(5,852,870 - 5,854,005)
sequence
gaattcaatggtggtataatgcaatgtgatggctcttttccattgtttgt
tcattccccgtcgttgagaagctttttacatttacagtttgtctaatttg
gcatgttttctttgatactctactaacatgatttttttgttcaacttgtt
agattcttaaataattttactaattaaagtgtaaatccaaagaagtaact
cacaatttttattttatattttggttaccatgaagagatcacccaaaatt
ctagtttcaatggtataaatacacattaatgtactcacataaaataaaaa
aaatgtgatataaagaattaaataacactggaagaacactatagatttat
gagcccctcctgtcttaacaggtggtaacaattaccttctgttccatttt
cctctcttgattttgcagagagaagggaggtgtgactctctaaaccaatt
cagtcctctcatgacacacaatacaaatcacaacctgctttggaatttct
atagaaattatagatattcaggtctcatgcacctattctcagaagttctt
aaccaatgatccacactgtattctctcaagtatgtagaaaacaaattgct
tgacatccactaccatcttagattttctggtgattttatcctgttatcta
attttgtcagcctatccactctcttcacctaaacagaagatttttagact
gtctccatcacacacgtgttaaatcttatactttatttattgtgctttag
atgcttgtaccatgtgtacttagatacatgtgccattgcacccatgtgga
gatcagaggacaagttgaggaactaatttctccactgataccatgtaact
gaaagaaataactaaagttcttgaggtttagataatattatacgtttgga
ttttagttatttgaaaaaataggtattccattgactcctgattgctgctt
gctaccttagtaagccctagtctcagtacagcccagcctttacctcacta
agcccagtccacagtgacattagagtagtgcaaagggatttgatgtccct
ctgaacttgaacagatggatgtctatatttggaga
gaattccactctctgtgccaagatccaccgtactattcctgcttttgaaa
tggcccatactcactttattttaaccaatcagaagatactttaggcaggc
aaggatggatagagatacatcttcaatagtgtataataaacattatccct
ataagcaatggtaggcggaaagaggagggaagtaattctgccttttgtgt
gtctctgtgctgagttagattagtgactctagatccatgaatcagaattg
tatttattatgagtggccataaatggtgttattgtatgatttcctcccaa
aaggaagacgcttggttttgttgagttttatacaggaatttaagaggcca
tgtatttgcctaatttgaagttctttaaaaacagtgatgagatgtttccc
atgagaaaaaaagaacaggaaccaccttgaatgttcctgcagctgtctta
gaacatcagcctgaccacaggtgtaagaactccagcaaccatgctagcag
tagttactgactgctgtgtaagcagtgttttctttcttcaggagaaaaag
atacaaggttttggacaatgcctgggcgggctctcagagttcaggcagat
atgtgaagacctcctaccaacactagtgagagccatgccaacaggtttca
gttgtcctttcaatatttctgaatgcaatttgatggtgtgaatgaaaaac
acaagaaggatagagtgcaagccctcagagtgaggaggcttagggacttt
ccaatgatgccaaaggctaggagtgcactcaccctatcctatgttaacca
gaaatcatgttgaaccattataatgagtaatgttcaattcagtagaccct
gtggattctagtctggagaagagaactttcagcagaaatctaaacttgca
catttcacacctgcttagtactagcaaagttggggttgctgagattaggc
cagcacctgaacagttactgtagaaagatagccttgggtttcctatctgt
tggacggctgcagcttctcatgttcagattcgagcctgggagcatcttgt
agctggaaagaaaaagtactagcagacgaagaagagatgcaacaagacag
atcctggatcagatcaatgtttataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5964065_5965151
seq2: B6Ng01-304O02.b_46_1130 (reverse)

seq1  TCTCTCAAATATAGACAT-CATCTGTTCATG-TCAGA-GGACATTCAAAA  47
      |||| ||||||||||||| |||||||||| | ||||| ||||| ||||| 
seq2  TCTC-CAAATATAGACATCCATCTGTTCAAGTTCAGAGGGACA-TCAAAT  48

seq1  CCCTTTCCACTACTCTAATGTCACTGTGGACTGGG-TTAGTGAGGTTAAA  96
      |||||| |||||||||||||||||||||||||||| ||||||||| ||||
seq2  CCCTTTGCACTACTCTAATGTCACTGTGGACTGGGCTTAGTGAGG-TAAA  97

seq1  GGCTGGGCTGTCCCTGAGACTAGGGCTTACCTAAGGTAGCAAGCAGCAAT  146
      |||||||||||  |||||||||||||||| ||||||||||||||||||||
seq2  GGCTGGGCTGT-ACTGAGACTAGGGCTTA-CTAAGGTAGCAAGCAGCAAT  145

seq1  CAGGAGTCAATGGAATACCCTATTTTTTTAAATAACTAAAATCCAAACCT  196
      ||||||||||||||||| |||||||||| ||||||||||||||||||| |
seq2  CAGGAGTCAATGGAATA-CCTATTTTTTCAAATAACTAAAATCCAAACGT  194

seq1  ATAATATTATCTAAACCTCAAGAACTTTAGTTATTTCTTTCAGTTACATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTATCTAAACCTCAAGAACTTTAGTTATTTCTTTCAGTTACATG  244

seq1  GTATCAGTGGAGAAATTAGTTCCTCAACTTGTCCTCTGATCTCCACATGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTGGAGAAATTAGTTCCTCAACTTGTCCTCTGATCTCCACATGG  294

seq1  GTGCAATGGCACATGTATCTAAGTACACATGGTACAAGCATCTAAAGCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGGCACATGTATCTAAGTACACATGGTACAAGCATCTAAAGCAC  344

seq1  AATAAATAAAGTATAAGATTTAAAACGTGTGTGATGGAGACAGTCTAAAA  396
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAAATAAAGTATAAGATTTAACACGTGTGTGATGGAGACAGTCTAAAA  394

seq1  ATCTTCTGTTTAGGTGAAGAGAGTGGATAGGCTGACAAAATTAGATAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTTTAGGTGAAGAGAGTGGATAGGCTGACAAAATTAGATAACA  444

seq1  GGATAAAATCACCAGAAAATCTAAGATGGTAGTGGATGTCAAGCAATTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAATCACCAGAAAATCTAAGATGGTAGTGGATGTCAAGCAATTTG  494

seq1  TTTTCTACATACTTGAGAGAATACAGTGTGGATCATTGGTTAAGAACTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACATACTTGAGAGAATACAGTGTGGATCATTGGTTAAGAACTTC  544

seq1  TGAGAATAGGTGCATGAGACCTGAATATCTATAATTTCTATAGAAATTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAGGTGCATGAGACCTGAATATCTATAATTTCTATAGAAATTCC  594

seq1  AAAGCAGGTTGTGATTTGTATTGTGTGTCATGAGAGGACTGAATTGGTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTTGTGATTTGTATTGTGTGTCATGAGAGGACTGAATTGGTTT  644

seq1  AGAGAGTCACACCTCCCTTCTCTCTGCAAAATCAAGAGAGGAAAATGGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCACACCTCCCTTCTCTCTGCAAAATCAAGAGAGGAAAATGGAA  694

seq1  CAGAAGGTAATTGTTACCACCTGTTAAGACAGGAGGGGCTCATAAATCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTAATTGTTACCACCTGTTAAGACAGGAGGGGCTCATAAATCTA  744

seq1  TAGTGTTCTTCCAGTGTTATTTAATTCTTTATATCACATTTTTTTTATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCTTCCAGTGTTATTTAATTCTTTATATCACATTTTTTTTATTT  794

seq1  TATGTGAGTACATTAATGTGTATTTATACCATTGAAACTAGAATTTTGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTACATTAATGTGTATTTATACCATTGAAACTAGAATTTTGGG  844

seq1  TGATCTCTTCATGGTAACCAAAATATAAAATAAAAATTGTGAGTTACTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTTCATGGTAACCAAAATATAAAATAAAAATTGTGAGTTACTTC  894

seq1  TTTGGATTTACACTTTAATTAGTAAAATTATTTAAGAATCTAACAAGTTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTACACTTTAATTAGTAAAATTATTTAAGAATCTAACAAGTTG  944

seq1  AACAAAAAAATCATGTTAGTAGAGTATCAAAGAAAACATGCCAAATTAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAATCATGTTAGTAGAGTATCAAAGAAAACATGCCAAATTAGA  994

seq1  CAAACTGTAAATGTAAAAAGCTTCTCAACGATGGGGAATGAACAAACAAT  1046
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAACTGTAAATGTAAAAAGCTTCTCAACGACGGGGAATGAACAAACAAT  1044

seq1  GGAAAAGAGCCATCACATTGCATTATACCACCATTGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGCCATCACATTGCATTATACCACCATTGAATTC  1085

seq1: chr7_5852870_5854005
seq2: B6Ng01-304O02.g_66_1194

seq1  GAATTCCACTCTCTGTGCCAAGATCCACCGTACTATTCCTGCTTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTCTGTGCCAAGATCCACCGTACTATTCCTGCTTTTGAAA  50

seq1  TGGCCCATACTCACTTTATTTTAACCAATCAGAAGATACTTTAGGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATACTCACTTTATTTTAACCAATCAGAAGATACTTTAGGCAGGC  100

seq1  AAGGATGGATAGAGATACATCTTCAATAGTGTATAATAAACATTATCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGATAGAGATACATCTTCAATAGTGTATAATAAACATTATCCCT  150

seq1  ATAAGCAATGGTAGGCGGAAAGAGGAGGGAAGTAATTCTGCCTTTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAATGGTAGGCGGAAAGAGGAGGGAAGTAATTCTGCCTTTTGTGT  200

seq1  GTCTCTGTGCTGAGTTAGATTAGTGACTCTAGATCCATGAATCAGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGCTGAGTTAGATTAGTGACTCTAGATCCATGAATCAGAATTG  250

seq1  TATTTATTATGAGTGGCCATAAATGGTGTTATTGTATGATTTCCTCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATGAGTGGCCATAAATGGTGTTATTGTATGATTTCCTCCCAA  300

seq1  AAGGAAGACGCTTGGTTTTGTTGAGTTTTATACAGGAATTTAAGAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGACGCTTGGTTTTGTTGAGTTTTATACAGGAATTTAAGAGGCCA  350

seq1  TGTATTTGCCTAATTTGAAGTTCTTTAAAAACAGTGATGAGATGTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGCCTAATTTGAAGTTCTTTAAAAACAGTGATGAGATGTTTCCC  400

seq1  ATGAGAAAAAAAGAACAGGAACCACCTTGAATGTTCCTGCAGCTGTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAAAAAGAACAGGAACCACCTTGAATGTTCCTGCAGCTGTCTTA  450

seq1  GAACATCAGCCTGACCACAGGTGTAAGAACTCCAGCAACCATGCTAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCAGCCTGACCACAGGTGTAAGAACTCCAGCAACCATGCTAGCAG  500

seq1  TAGTTACTGACTGCTGTGTAAGCAGTGTTTTCTTTCTTCAGGAGAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTGACTGCTGTGTAAGCAGTGTTTTCTTTCTTCAGGAGAAAAAG  550

seq1  ATACAAGGTTTTGGACAATGCCTGGGCGGGCTCTCAGAGTTCAGGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGTTTTGGACAATGCCTGGGCGGGCTCTCAGAGTTCAGGCAGAT  600

seq1  ATGTGAAGACCTCCTACCAACACTAGTGAGAGCCATGCCAACAGGTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGACCTCCTACCAACACTAGTGAGAGCCATGCCAACAGGTTTCA  650

seq1  GTTGTCCTTTCAATATTTCTGAATGCAATTTGATGGTGTGAATGAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTTTCAATATTTCTGAATGCAATTTGATGGTGTGAATGAAAAAC  700

seq1  AAAAGAAGGATAGAGTGCAAGCCCTCAGAGTGAGGAGGCTTAGGGACTTT  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGGATAGAGTGCAAGCCCTCAGAGTGAGGAGGCTTAGGGACTTT  750

seq1  CCAATGATGCCAAAGGCTAGGAGTGCACTCACCCTATCCTATGTTAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGATGCCAAAGGCTAGGAGTGCACTCACCCTATCCTATGTTAACCA  800

seq1  GAAATCATGTTGAACCATTATAATGAGTAATGTTCAATTCAGTAGACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGTTGAACCATTATAATGAGTAATGTTCAATTCAGTAGACCCT  850

seq1  GTGGATTCTAGTCTGGAGAAGAGAACTTTCAGCAGAAATCTAAACTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCTAGTCTGGAGAAGAGAACTTTCAGCAGAAATCTAAACTTGCA  900

seq1  CATTTCACACCTGCTTAGTACTAGCAAAGTTGGGGTTGCTGAGATTAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACACCTGCTTAGTACTAGCAAAGTTGGGGTTGCTGAGATTAGGC  950

seq1  CAGCACCTGAACAGTTACTGTAGAAAGATAGCCCTGGG-TTCCTATCTGT  999
      ||||||||||||||||||||||||||||||||| |||| |||||||||||
seq2  CAGCACCTGAACAGTTACTGTAGAAAGATAGCCTTGGGTTTCCTATCTGT  1000

seq1  TGGGGCCGGCCTGCAGC-TCTCATGTCCAGATTCGAGCCTGGGAGGCATC  1048
      |  || ||| ||||||| |||||||| ||||||||||||||||| |||||
seq2  T--GGACGG-CTGCAGCTTCTCATGTTCAGATTCGAGCCTGGGA-GCATC  1046

seq1  TTGTAGCT-GAAAGAAAAGGAAACTAGGCAGACGAGAGAGAGATGGAACC  1097
      |||||||| ||||||||| |  |||| ||||||||   ||||||| || |
seq2  TTGTAGCTGGAAAGAAAAAG-TACTA-GCAGACGAAGAAGAGATGCAA-C  1093

seq1  AAGACAGGATTCT-GATCAAGGATCAATGTTTAATAATAA  1136
      |||||| ||| || |||||  ||||||||||| |||||||
seq2  AAGACA-GATCCTGGATCA--GATCAATGTTT-ATAATAA  1129