BAC Information

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BAC

Clone NameB6Ng01-306O22
Chromosome7 (Build37)
Map Location 49,195,009 - 49,373,613
singlet/doubletdoublet
Overlap geneGprc2a-rs1, EG628444, EG434174, EG637913, EG434175
Upstream gene4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422
Downstream geneLOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O22.bB6Ng01-306O22.g
ACCGA099838GA099839
length1,0931,152
definitionB6Ng01-306O22.b B6Ng01-306O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,195,009 - 49,196,095)(49,372,442 - 49,373,613)
sequence
gaattctatctttgacataattaagaaagatgactcttttcattaactaa
ctgatataaggataacactttattttaaagttagctttgcatattctaca
tcttgcatcagtgatatcgtgaattttaaattgttaccatgtgtgttttc
actataatttgccttacgtattgcttagaaatatactcactaaaatcaaa
ttgagcagcattttgtatccatgactaaagttctattctgtgcatactga
aaatgtccctagttgtaccatataccttaagtacagtaaagagatatttt
tcaagagagtatttcatatctgttactatgagtacacaaggaatttcatg
gtggtaggaattaatatcacataaggatgaactcaatgctgccattgagc
ttagtctacttattgtcaaaacccatctaaatgtttggttttatgtagat
caacacgtgacaccctcagccttactccaagaatcctatcttcactatta
tctgatgaaagcgaagatatatgagtatagaagatcacgaattaagtgaa
gccttaatccctatttataagcaagtactttatacctattaattttaagg
tatagtggaaataaagtcacagtggtgataagatgaatactgagagtttc
ttgcttccaggcaatgcatgctttgttaaaggaactctcaacaagtaaag
ctggtttttcacttggttctgcattagcctgggttgcaaaaaaaatgatg
actttttttttatccttccttgcaactatatcctgcaaaaatagtcaaag
atagaagtgaactatctttgactttcacttgtataacaactgatgataca
ttattttcacaagtatagtctaagcccaagggtcatgatgatgatcatca
ttaaacccaatgggaggagctagaaaaagtactcaaggagctgaaggagt
ctgcaaccttatagtggaacaacaatatgaattaaacagtacccccagag
ctcatatctctagctgcatattgtagcagaagatagcctaggtcagccat
tattggaaaagaagtccccttggtcttaacaaatttttatatg
gaattcaataaagtagacaccacattgatacttctcagaaaatgaacaca
gcccaaatacatgatagacctccttaaaaagatttagagtatattcaatg
accattgtaactgtgtatgaaggaaagatcacagggctgcaattcacgga
tatagagacctcaattataatgtcacaggcaagagtggagaaatgtactc
aggataaagatatatttaggggtagaactattttcactgctaatacatgg
aaggataaaatggacaaatcaatcttggatcacttttagacaccagagca
atgtcctagaaaacttccagcaactccatttttctattcttttacttggg
aaaatataacacaaatatgagtgtatgcagaaaaacatgtctgtgaattt
gataagacaagatcgttaatatttaatagtgaaaatacccttttctagta
atggacatgtttgattttacttttgattatataaacttagactataaaaa
taaactttataaaaatatagtttttacttctgaacatatttctttgtctg
ctgtctttgatctattttactaaacaccacaccaaggatttaacaattac
acagcaatgtcacactgagcacaattcacattcataagtatgttttcttc
ctgtcttcttatccattatcttcctactgattttctcatatgttcacaga
tattgacaagatctattttctacatcatgctcttttaccattgatccata
gagattccagatataaactttgtataagtacactctatctcttctgtaaa
aagaaagaacttaatacttgtcattactttcctaagaaatcagacttttg
tgaagctattttttaatattgcaaatttcaaaaaactctaacatgctctg
aagtggccatcctgcaagatagtgtatttaggagcacatacacataaagg
agggaaacactagaaacatatgggagcagataattttacattctgtctga
agagttaaaagtttagacacccaccccccaaaacatttagtgaaaaaaga
aagaaattgaaaagacgttgtttgatcagacgtgctaccattttattgcg
acagccttcctctaaatcagctgtggttaaaatgtccagaattggtcact
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49195009_49196095
seq2: B6Ng01-306O22.b_45_1137

seq1  GAATTCTATCTTTGACATAATTAAGAAAGATGACTCTTTTCATTAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTTTGACATAATTAAGAAAGATGACTCTTTTCATTAACTAA  50

seq1  CTGATATAAGGATAACACTTTATTTTAAAGTTAGCTTTGCATATTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATAAGGATAACACTTTATTTTAAAGTTAGCTTTGCATATTCTACA  100

seq1  TCTTGCATCAGTGATATCGTGAATTTTAAATTGTTACCATGTGTGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATCAGTGATATCGTGAATTTTAAATTGTTACCATGTGTGTTTTC  150

seq1  ACTATAATTTGCCTTACGTATTGCTTAGAAATATACTCACTAAAATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTGCCTTACGTATTGCTTAGAAATATACTCACTAAAATCAAA  200

seq1  TTGAGCAGCATTTTGTATCCATGACTAAAGTTCTATTCTGTGCATACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGCATTTTGTATCCATGACTAAAGTTCTATTCTGTGCATACTGA  250

seq1  AAATGTCCCTAGTTGTACCATATACCTTAAGTACAGTAAAGAGATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCTAGTTGTACCATATACCTTAAGTACAGTAAAGAGATATTTT  300

seq1  TCAAGAGAGTATTTCATATCTGTTACTATGAGTACACAAGGAATTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGTATTTCATATCTGTTACTATGAGTACACAAGGAATTTCATG  350

seq1  GTGGTAGGAATTAATATCACATAAGGATGAACTCAATGCTGCCATTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGAATTAATATCACATAAGGATGAACTCAATGCTGCCATTGAGC  400

seq1  TTAGTCTACTTATTGTCAAAACCCATCTAAATGTTTGGTTTTATGTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTACTTATTGTCAAAACCCATCTAAATGTTTGGTTTTATGTAGAT  450

seq1  CAACACGTGACACCCTCAGCCTTACTCCAAGAATCCTATCTTCACTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGTGACACCCTCAGCCTTACTCCAAGAATCCTATCTTCACTATTA  500

seq1  TCTGATGAAAGCGAAGATATATGAGTATAGAAGATCACGAATTAAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGAAAGCGAAGATATATGAGTATAGAAGATCACGAATTAAGTGAA  550

seq1  GCCTTAATCCCTATTTATAAGCAAGTACTTTATACCTATTAATTTTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAATCCCTATTTATAAGCAAGTACTTTATACCTATTAATTTTAAGG  600

seq1  TATAGTGGAAATAAAGTCACAGTGGTGATAAGATGAATACTGAGAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGGAAATAAAGTCACAGTGGTGATAAGATGAATACTGAGAGTTTC  650

seq1  TTGCTTCCAGGCAATGCATGCTTTGTTAAAGGAACTCTCAACAAGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAGGCAATGCATGCTTTGTTAAAGGAACTCTCAACAAGTAAAG  700

seq1  CTGGTTTTTCACTTGGTTCTGCATTAGCCTGGGTTGCAAAAAAAATGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTCACTTGGTTCTGCATTAGCCTGGGTTGCAAAAAAAATGATG  750

seq1  AC--TTTTTTTATCCTTCCTTGCAACTATATCCTGCAAAAATAGTCAAAG  798
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTATCCTTCCTTGCAACTATATCCTGCAAAAATAGTCAAAG  800

seq1  ATAGAAGTGAACTATCTTTGACTTTCACTTGTATAACAACTGATGATACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGAACTATCTTTGACTTTCACTTGTATAACAACTGATGATACA  850

seq1  TTATTTTCACAAGTATAGTCTAAGCCCAAGGGTCATGATGATGATCATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCACAAGTATAGTCTAAGCCCAAGGGTCATGATGATGATCATCA  900

seq1  TTAAACCCAAT-GGAGGAGCTAGAAAAAGTACTCAAGGAGCTGAAGGAGT  947
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCAATGGGAGGAGCTAGAAAAAGTACTCAAGGAGCTGAAGGAGT  950

seq1  CTGCAACCTTATAGGTGGAACAACAATATGAATTAAACAGTACCCCCAGA  997
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCTTATA-GTGGAACAACAATATGAATTAAACAGTACCCCCAGA  999

seq1  GCTCATATCTCTAGCTGCATA-TGTAGCAGAAGATAGCCTA-GTCAGCCA  1045
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GCTCATATCTCTAGCTGCATATTGTAGCAGAAGATAGCCTAGGTCAGCCA  1049

seq1  TTATTGGGAATAGAGTCCCCTTGGTCTT-ACAAA-TTTTATATG  1087
      ||||||| ||   ||||||||||||||| ||||| |||||||||
seq2  TTATTGGAAAAGAAGTCCCCTTGGTCTTAACAAATTTTTATATG  1093

seq1: chr7_49372442_49373613
seq2: B6Ng01-306O22.g_66_1217 (reverse)

seq1  AGAGTGACATATCCTGACTATTTTATACACAGCTGATTTTAGAGGAAGGC  50
      ||||||||  || |||   ||||||  ||||||||| |||||||||||||
seq2  AGAGTGACCAATTCTGGACATTTTAACCACAGCTGA-TTTAGAGGAAGGC  49

seq1  TGTCGCCATTAAAATTTGTAAGCACTTTCTGATCTATACACGTCTTTTTC  100
      |||||| || |||   ||  |||||  ||||||| |   ||||| |||||
seq2  TGTCGCAATAAAA---TGGTAGCAC-GTCTGATCAAACAACGTC-TTTTC  94

seq1  TATTTTTCTTTCTTTTTTCACTTAATTGTATTTTGTGTGTGTGTGTTGTC  150
       |  ||||||||||||||||| ||| ||| ||| | | ||| ||||    
seq2  AA--TTTCTTTCTTTTTTCAC-TAAATGT-TTTGGGGGGTGGGTGT----  136

seq1  CTAAACTTTTTAACTC-TCAGACAG-ATGTAAAAATTTTATCTGCTTCCC  198
      |||||| ||||||||| |||||||| ||||||||   |||||||| ||||
seq2  CTAAAC-TTTTAACTCTTCAGACAGAATGTAAAA---TTATCTGC-TCCC  181

seq1  ATATGTTTCTAGTGTTTTCCCTCCTTTATGTGTATGTGCTCCTAAAATAC  248
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  ATATGTTTCTAGTG-TTTCCCTCCTTTATGTGTATGTGCTCCT-AAATAC  229

seq1  ACTATCTTGCAGGATGGCCACTTCAGAGCATTGTTAGAGTTTTTTGAAAT  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTATCTTGCAGGATGGCCACTTCAGAGCA-TGTTAGAGTTTTTTGAAAT  278

seq1  TTGCAATATTAAAAAATAGCTTCACAAAAGTCTGATTTCTTAGGAAAGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATATTAAAAAATAGCTTCACAAAAGTCTGATTTCTTAGGAAAGTA  328

seq1  ATGACAAGTATTAAGTTCTTTCTTTTTACAGAAGAGATAGAGTGTACTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGTATTAAGTTCTTTCTTTTTACAGAAGAGATAGAGTGTACTTA  378

seq1  TACAAAGTTTATATCTGGAATCTCTATGGATCAATGGTAAAAGAGCATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTTTATATCTGGAATCTCTATGGATCAATGGTAAAAGAGCATGA  428

seq1  TGTAGAAAATAGATCTTGTCAATATCTGTGAACATATGAGAAAATCAGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAATAGATCTTGTCAATATCTGTGAACATATGAGAAAATCAGTA  478

seq1  GGAAGATAATGGATAAGAAGACAGGAAGAAAACATACTTATGAATGTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAATGGATAAGAAGACAGGAAGAAAACATACTTATGAATGTGAA  528

seq1  TTGTGCTCAGTGTGACATTGCTGTGTAATTGTTAAATCCTTGGTGTGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCAGTGTGACATTGCTGTGTAATTGTTAAATCCTTGGTGTGGTG  578

seq1  TTTAGTAAAATAGATCAAAGACAGCAGACAAAGAAATATGTTCAGAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAAATAGATCAAAGACAGCAGACAAAGAAATATGTTCAGAAGTA  628

seq1  AAAACTATATTTTTATAAAGTTTATTTTTATAGTCTAAGTTTATATAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATATTTTTATAAAGTTTATTTTTATAGTCTAAGTTTATATAATC  678

seq1  AAAAGTAAAATCAAACATGTCCATTACTAGAAAAGGGTATTTTCACTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAATCAAACATGTCCATTACTAGAAAAGGGTATTTTCACTATT  728

seq1  AAATATTAACGATCTTGTCTTATCAAATTCACAGACATGTTTTTCTGCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAACGATCTTGTCTTATCAAATTCACAGACATGTTTTTCTGCAT  778

seq1  ACACTCATATTTGTGTTATATTTTCCCAAGTAAAAGAATAGAAAAATGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATATTTGTGTTATATTTTCCCAAGTAAAAGAATAGAAAAATGGA  828

seq1  GTTGCTGGAAGTTTTCTAGGACATTGCTCTGGTGTCTAAAAGTGATCCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGAAGTTTTCTAGGACATTGCTCTGGTGTCTAAAAGTGATCCAA  878

seq1  GATTGATTTGTCCATTTTATCCTTCCATGTATTAGCAGTGAAAATAGTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTTGTCCATTTTATCCTTCCATGTATTAGCAGTGAAAATAGTTC  928

seq1  TACCCCTAAATATATCTTTATCCTGAGTACATTTCTCCACTCTTGCCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTAAATATATCTTTATCCTGAGTACATTTCTCCACTCTTGCCTGT  978

seq1  GACATTATAATTGAGGTCTCTATATCCGTGAATTGCAGCCCTGTGATCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATAATTGAGGTCTCTATATCCGTGAATTGCAGCCCTGTGATCTT  1028

seq1  TCCTTCATACACAGTTACAATGGTCATTGAATATACTCTAAATCTTTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATACACAGTTACAATGGTCATTGAATATACTCTAAATCTTTTTA  1078

seq1  AGGAGGTCTATCATGTATTTGGGCTGTGTTCATTTTCTGAGAAGTATCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCTATCATGTATTTGGGCTGTGTTCATTTTCTGAGAAGTATCAA  1128

seq1  TGTGGTGTCTACTTTATTGAATTC  1172
      ||||||||||||||||||||||||
seq2  TGTGGTGTCTACTTTATTGAATTC  1152