BAC Information

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BAC

Clone NameB6Ng01-307A09
Chromosome7 (Build37)
Map Location 24,310,237 - 24,311,364
singlet/doubletsinglet
Overlap geneLOC667651
Upstream geneEG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032
Downstream geneLOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307A09.bB6Ng01-307A09.g
ACCGA099906GA099907
length1,131903
definitionB6Ng01-307A09.b B6Ng01-307A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaccaatttggtgaggcaggttccatccaagccccaactggt
actatggtctggttcctctcagccagcactgccaaaatgtcctggctctt
tgtggaatttaaatccagggccaattttgtgggattccgaggcttcttga
ggggcaccatacctcctggcattgacttctgtgaagcctggagcatgtcg
cgatcctgaccatctcacacaaagactcaaactctgcgggctgctatgca
aaggacaaacagcgaactctgcatttttttttaaatggagtaattgtgtg
tcctgtttgatagtgaaagaaaagagaaacagggactgctatctctcttt
ctttgtggatgggagaggaaaaagctgtgatttatcacggtgatatgcct
atctttgtaactaagtggtgtctaaatctgtattgaaagggaaagaacgt
gggttggaacacagggcttatacagtaccccctccaagagtatatgagga
ggtggtggtgactacatggctttgatttcctgtttagggtcaataaaatc
tggattacagtggtctttatggtcatgatcttcagactcacctactgtga
gaacttaacatttgctgtgggtctgttctaaatgatcatatgcatgggtg
ggttgctactattctaacaatgagcatttatgttgtcaccctagctcaca
aaaataaaaatgacacggtgacttatgttcataatacctaggcctcgagc
taggcttcttcccactacttcattactcaattattacattgatactaatc
taagttctgccaggtgatgagttaccactgctcagatttatagttcaaat
ttctccagatctttgtggtgaatcatatgactgactctttctcaaagttc
tgatttttgtccagaaagttgcaacttactattctgctttttgctatgaa
cctggacttttaaactcaggaagaatattcatttttctcttcaggtgacc
tcttctaagtgggtccagccagaagtacacagctgtgcaaattcagcaga
gaccattgacaggtccttctgccttcatctggcacccagagtttgggaat
ggttctgcagaactctgtatactattcctgc
gaattccttgttttctccatctatggtaattgagtgttttgctgggttat
agtagcctgggctggcatttgtgttctcttgggtctgtatgatatatgcc
taggatcttctggctttcatagtctctggggagaagtcaggtgtaattct
gataggtctgcctttatatgttacttaacctttttcccttactgctttta
atattctttcattgttttgtgcatttggtgttttgattattatgtgacag
gaggaatttcttttcttgtccaaactatttggagttttgtagacttcttg
ttgtatgttcataggcatctctttctttaggttggggaagttttcttcta
cagttttgaagatatttactggccctttaagttaggaatcttccttcttg
tctatacctattatccttagattttttcttctcattgtatcctggatttc
ctggatgttttgggtttggatatttttgcattttctttgattgttgtgtc
aatgttttctatggtatcttgtgcacctgagagtctctttatctttttta
ttctgttggtgatgcttgcatccatggcttctgacttctttcctaggttt
tctatttctagagttgtctccctttgtgatttctttattgtttctacttc
catttttagatcctggatggttttattcaattctttctcttgtttagatg
tgttttcctgtaactctttaagggatttttgtgtttcttctttaaggggt
tctacttgtttacctgtgttctcctttatttctttaagagttatttatgt
ccttatagtcctctatcatcatcatgaaaagtgactttagatccatatgt
ttatttttctagtgtgatgatatatccaggagtagctatggtgggagaat
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24310237_24311364
seq2: B6Ng01-307A09.b_47_1177 (reverse)

seq1  GCAGGAATAGTATACAGAGTCCTGCAGAAC--ATCCCAACCTCCTGGGTG  48
      |||||||||||||||||||| |||||||||   |||||| || |||||||
seq2  GCAGGAATAGTATACAGAGTTCTGCAGAACCATTCCCAAACT-CTGGGTG  49

seq1  -CAGATGGAGGCAGAAGGACCCTGTTCCAACTG-CTCTGCTGATTTTGCA  96
       |||||| ||||||||||| |||||  |||  | ||||||||| ||||||
seq2  CCAGATGAAGGCAGAAGGA-CCTGT--CAATGGTCTCTGCTGAATTTGCA  96

seq1  -GCCTGTGTACTTCTGGCTGGACCCACCTTAG-AGA-GTCA-CTGGAGAG  142
         ||||||||||||||||||||||| ||||| ||| |||| ||| ||||
seq2  CAGCTGTGTACTTCTGGCTGGACCCA-CTTAGAAGAGGTCACCTGAAGAG  145

seq1  -AAAATGATTATCTTCCCTGAGTTTTAAAAGTCCAGGGTTCATAGCAAAA  191
       ||||||| |||  | |||||| |||||||||||| ||||||||||||||
seq2  AAAAATGAATATTCTTCCTGAG-TTTAAAAGTCCA-GGTTCATAGCAAAA  193

seq1  AGCAGAATAGTAAGTTGCAAC-TTCTGGACAAAAATCAGAACTTTGAGAA  240
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAGAATAGTAAGTTGCAACTTTCTGGACAAAAATCAGAACTTTGAGAA  243

seq1  AGAGTCAGTCATATGATTCACCACAAAGATCTGGAGAAATTTGAACTATA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTCATATGATTCACCACAAAGATCTGGAGAAATTTGAACTATA  293

seq1  AATCTGAGCAGTGGTAACTCATCACCTGGCAGAACTTAGATTAGTATCAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGCAGTGGTAACTCATCACCTGGCAGAACTTAGATTAGTATCAA  343

seq1  TGTAATAATTGAGTAATGAAGTAGTGGGAAGAAGCCTAGCTCGAGGCCTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATTGAGTAATGAAGTAGTGGGAAGAAGCCTAGCTCGAGGCCTA  393

seq1  GGTATTATGAACATAAGTCACCGTGTCATTTTTATTTTTGTGAGCTAGGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATGAACATAAGTCACCGTGTCATTTTTATTTTTGTGAGCTAGGG  443

seq1  TGACAACATAAATGCTCATTGTTAGAATAGTAGCAACCCACCCATGCATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACATAAATGCTCATTGTTAGAATAGTAGCAACCCACCCATGCATA  493

seq1  TGATCATTTAGAACAGACCCACAGCAAATGTTAAGTTCTCACAGTAGGTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTAGAACAGACCCACAGCAAATGTTAAGTTCTCACAGTAGGTG  543

seq1  AGTCTGAAGATCATGACCATAAAGACCACTGTAATCCAGATTTTATTGAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGATCATGACCATAAAGACCACTGTAATCCAGATTTTATTGAC  593

seq1  CCTAAACAGGAAATCAAAGCCATGTAGTCACCACCACCTCCTCATATACT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGGAAATCAAAGCCATGTAGTCACCACCACCTCCTCATATACT  643

seq1  CTTGGAGGGGGTACTGTATAAGCCCTGTGTTCCAACCCACGTTCTTTCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGGGTACTGTATAAGCCCTGTGTTCCAACCCACGTTCTTTCCC  693

seq1  TTTCAATACAGATTTAGACACCACTTAGTTACAAAGATAGGCATATCACC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATACAGATTTAGACACCACTTAGTTACAAAGATAGGCATATCACC  743

seq1  GTGATAAATCACAGCTTTTTCCTCTCCCATCCACAAAGAAAGAGAGATAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATCACAGCTTTTTCCTCTCCCATCCACAAAGAAAGAGAGATAG  793

seq1  CAGTCCCTGTTTCTCTTTTCTTTCACTATCAAACAGGACACACAATTACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTGTTTCTCTTTTCTTTCACTATCAAACAGGACACACAATTACT  843

seq1  CCATTTAAAAAAAAATGCAGAGTTCGCTGTTTGTCCTTTGCATAGCAGCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAAAAAAATGCAGAGTTCGCTGTTTGTCCTTTGCATAGCAGCC  893

seq1  CGCAGAGTTTGAGTCTTTGTGTGAGATGGTCAGGATCGCGACATGCTCCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGTTTGAGTCTTTGTGTGAGATGGTCAGGATCGCGACATGCTCCA  943

seq1  GGCTTCACAGAAGTCAATGCCAGGAGGTATGGTGCCCCTCAAGAAGCCTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACAGAAGTCAATGCCAGGAGGTATGGTGCCCCTCAAGAAGCCTC  993

seq1  GGAATCCCACAAAATTGGCCCTGGATTTAAATTCCACAAAGAGCCAGGAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCCACAAAATTGGCCCTGGATTTAAATTCCACAAAGAGCCAGGAC  1043

seq1  ATTTTGGCAGTGCTGGCTGAGAGGAACCAGACCATAGTACCAGTTGGGGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCAGTGCTGGCTGAGAGGAACCAGACCATAGTACCAGTTGGGGC  1093

seq1  TTGGATGGAACCTGCCTCACCAAATTGGTTTGGAATTC  1128
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGGAACCTGCCTCACCAAATTGGTTTGGAATTC  1131