BAC Information

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BAC

Clone NameB6Ng01-310M03
Chromosome7 (Build37)
Map Location 53,290,056 - 53,509,536
singlet/doubletdoublet
Overlap geneNomo1, Kcnj11, Abcc8, Ush1c, Otog
Upstream genePrr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6
Downstream geneMyod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310M03.bB6Ng01-310M03.g
ACCGA102649GA102650
length999944
definitionB6Ng01-310M03.b B6Ng01-310M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,508,966 - 53,509,536)(53,290,056 - 53,290,990)
sequence
gaattcacagggacactcagctggtgacatgcagcctccatcctcaaaga
tcagccctagggtgacagcaaagacccactcaccactgcctctgctcaca
agcccctatggtggatgcctgaactcttagataaaggtccccatactcag
agccatttctctactgagcccactttcttcctttctttaattgtatattt
tctttatttacatttaaaatgtttttcccttccccaatattcccctggag
gccctctatcccatccctcctccccctgcttctatgagggtgctcaccca
ccgacccactctcacttccctgccctagcattcccctacactggggcatt
gagccttcccaggaccaagaacctctcctcccagtgatgcccaacaaggc
catcctctgctacatacgcagctggagccatgggtccctctgtgtgtact
ctttggttagtggtttagtccctgggagctctagggggtctggttggttc
atattgttgttcttcatatggggttgcaaaccccttcagttccttcagtc
ctttctctaactgctccattggggacccaatgctcagtccagtggttggc
tgcgagcatcctcatctgtattggtcaggctctggcagagcctctcagga
gacagccgcatcaggctgctggcagcatgcgcttcttgctgagttcactt
tcaaactctcctctaaatcctggctcaggcagggcaccaacccccttctg
ggcagactttactccatgtatcaccccaaaattgcacaccacctctcaaa
ccctgccattctgtctccactgcctccggagacctttcctggcttcccta
cattgcacgaatccccagagctcttcttttctgactccctgagcccggcc
ttcacctcaccgtagcttgggctggagtgtcacatccctcaaagcagctc
tgttgcttaaaatcaaagcctgtcactttgctttgttgagacagggtcc
gaattcctgtgggcgtagcctttcttcaaactacctttcttctaggtggg
gttagaggtggtgtaagatttcccgacgcggagaatcaactgtcatcttc
caggctttctctgtagagtccctctacctcgttggttgatttataattga
ttttccaattttttgagacacagtatggccttagatttacaatataccca
aggctggctttgaactctggacactcttgcctctgtttcccacagtgctg
gattacaggagtatgtcctggttccatgtcaccaggggccgtgccaccta
ctggctttgtagcattgggcatctcagaagctgccctggaaggcttttca
gcttgagctttctgcagctttgagaggaaggagaggacagtcaggggtgt
cagaggacagtcacctcacccctaagcactaacagggattacgagagcag
agagtaggttttgtggtccattgtgaactgtggtgctccagccttagggc
tccttgtcctcctctctgaagcaacccatccttttgtaatctctgcttac
aacatcagacatctcatgcatgttatctccacggagggttttctgagctg
tacttcacaaaagacttgtactgcatggtccagagagaagtatggcagcc
atgcttttgattttgaattaatgggcttcttaaatacatgtatagtgaga
gtttgagtttttttttttttatcacaaaaaatattatatgttgtcatttt
taatccccatgtgtgggacatggggctgcctcagattgtcccccagtatc
tgatgatgatctccctcaggcactagcaggacaatattttgccaagctgc
agatagtttctgtgagtgtgtgacatttgggaattctggggactcttcag
agggaatataaatgctagggccctgagagggtgggggtgttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53508966_53509536
seq2: B6Ng01-310M03.b_49_619 (reverse)

seq1  CAATGGAGCAGTTAGAGAAAGGACTGAAGGAACTGAAGGGGTTTGCAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGCAGTTAGAGAAAGGACTGAAGGAACTGAAGGGGTTTGCAACC  50

seq1  CCATATGAAGAACAACAATATGAACCAACCAGACCCCCTAGAGCTCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGAAGAACAACAATATGAACCAACCAGACCCCCTAGAGCTCCCAG  100

seq1  GGACTAAACCACTAACCAAAGAGTACACACAGAGGGACCCATGGCTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAACCACTAACCAAAGAGTACACACAGAGGGACCCATGGCTCCAG  150

seq1  CTGCGTATGTAGCAGAGGATGGCCTTGTTGGGCATCACTGGGAGGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTATGTAGCAGAGGATGGCCTTGTTGGGCATCACTGGGAGGAGAGG  200

seq1  TTCTTGGTCCTGGGAAGGCTCAATGCCCCAGTGTAGGGGAATGCTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCCTGGGAAGGCTCAATGCCCCAGTGTAGGGGAATGCTAGGGC  250

seq1  AGGGAAGTGAGAGTGGGTCGGTGGGTGAGCACCCTCATAGAAGCAGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGAGAGTGGGTCGGTGGGTGAGCACCCTCATAGAAGCAGGGGG  300

seq1  AGGAGGGATGGGATAGAGGGCCTCCAGGGGAATATTGGGGAAGGGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGATGGGATAGAGGGCCTCCAGGGGAATATTGGGGAAGGGAAAAA  350

seq1  CATTTTAAATGTAAATAAAGAAAATATACAATTAAAGAAAGGAAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATGTAAATAAAGAAAATATACAATTAAAGAAAGGAAGAAAGT  400

seq1  GGGCTCAGTAGAGAAATGGCTCTGAGTATGGGGACCTTTATCTAAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGTAGAGAAATGGCTCTGAGTATGGGGACCTTTATCTAAGAGTT  450

seq1  CAGGCATCCACCATAGGGGCTTGTGAGCAGAGGCAGTGGTGAGTGGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCCACCATAGGGGCTTGTGAGCAGAGGCAGTGGTGAGTGGGTCT  500

seq1  TTGCTGTCACCCTAGGGCTGATCTTTGAGGATGGAGGCTGCATGTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCACCCTAGGGCTGATCTTTGAGGATGGAGGCTGCATGTCACCA  550

seq1  GCTGAGTGTCCCTGTGAATTC  571
      |||||||||||||||||||||
seq2  GCTGAGTGTCCCTGTGAATTC  571

seq1: chr7_53290056_53290990
seq2: B6Ng01-310M03.g_68_1011

seq1  GAATTCCTGTGGGCGTAGCCTTTCTTCAAACTACCTTTCTTCTAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGGCGTAGCCTTTCTTCAAACTACCTTTCTTCTAGGTGGG  50

seq1  GTTAGAGGTGGTGTAAGATTTCCCGACGCGGAGAATCAACTGTCATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGTGGTGTAAGATTTCCCGACGCGGAGAATCAACTGTCATCTTC  100

seq1  CAGGCTTTCTCTGTAGAGTCCCTCTACCTCGTTGGTTGATTTATAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCTCTGTAGAGTCCCTCTACCTCGTTGGTTGATTTATAATTGA  150

seq1  TTTTCCAATTTTTTGAGACACAGTATGGCCTTAGATTTACAATATACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATTTTTTGAGACACAGTATGGCCTTAGATTTACAATATACCCA  200

seq1  AGGCTGGCTTTGAACTCTGGACACTCTTGCCTCTGTTTCCCACAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTTTGAACTCTGGACACTCTTGCCTCTGTTTCCCACAGTGCTG  250

seq1  GATTACAGGAGTATGTCCTGGTTCCATGTCACCAGGGGCCGTGCCACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGGAGTATGTCCTGGTTCCATGTCACCAGGGGCCGTGCCACCTA  300

seq1  CTGGCTTTGTAGCATTGGGCATCTCAGAAGCTGCCCTGGAAGGCTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGTAGCATTGGGCATCTCAGAAGCTGCCCTGGAAGGCTTTTCA  350

seq1  GCTTGAGCTTTCTGCAGCTTTGAGAGGAAGGAGAGGACAGTCAGGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCTTTCTGCAGCTTTGAGAGGAAGGAGAGGACAGTCAGGGGTGT  400

seq1  CAGAGGACAGTCACCTCACCCCTAAGCACTAACAGGGATTACGAGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAGTCACCTCACCCCTAAGCACTAACAGGGATTACGAGAGCAG  450

seq1  AGAGTAGGTTTTGTGGTCCATTGTGAACTGTGGTGCTCCAGCCTTAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGTTTTGTGGTCCATTGTGAACTGTGGTGCTCCAGCCTTAGGGC  500

seq1  TCCTTGTCCTCCTCTCTGAAGCAACCCATCCTTTTGTAATCTCTGCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTCCTCTCTGAAGCAACCCATCCTTTTGTAATCTCTGCTTAC  550

seq1  AACATCAGACATCTCATGCATGTTATCTCCACGGAGGGTTTTCTGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGACATCTCATGCATGTTATCTCCACGGAGGGTTTTCTGAGCTG  600

seq1  TACTTCACAAAAGACTTGTACTGCATGGTCCAGAGAGAAGTATGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAAAAGACTTGTACTGCATGGTCCAGAGAGAAGTATGGCAGCC  650

seq1  ATGCTTTTGATTTTGAATTAATGGGCTTCTTAAATACATGTATAGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTGATTTTGAATTAATGGGCTTCTTAAATACATGTATAGTGAGA  700

seq1  GTTTGAG-TTTTTTTTTTTTATCACAAAAAATATTATATGTTGTCA-TTT  748
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTGAGTTTTTTTTTTTTTATCACAAAAAATATTATATGTTGTCATTTT  750

seq1  TAAT-CCCATGTGTGGGACATGGGGCTGCCTCAGATTGT-CCCCAGTATC  796
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATCCCCATGTGTGGGACATGGGGCTGCCTCAGATTGTCCCCCAGTATC  800

seq1  TGATGATGATCTCCCTCAGGCACTAGCAGGACAA-ATTTTGCC-AGCTGC  844
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGATGATGATCTCCCTCAGGCACTAGCAGGACAATATTTTGCCAAGCTGC  850

seq1  AGATAGTTTCTGTGAGTGTGTGACATTT-GGAATTCTGGGGACTCTTCAG  893
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGATAGTTTCTGTGAGTGTGTGACATTTGGGAATTCTGGGGACTCTTCAG  900

seq1  AGGGAATATAAATGCTAGGGCCCTGAGAGG--TGGGGTGTTGGT  935
      ||||||||||||||||||||||||||||||   |||||||||||
seq2  AGGGAATATAAATGCTAGGGCCCTGAGAGGGTGGGGGTGTTGGT  944