BAC Information

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BAC

Clone NameB6Ng01-310P12
Chromosome7 (Build37)
Map Location 4,597,915 - 4,719,550
singlet/doubletdoublet
Overlap geneSaps1, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik
Upstream geneCnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, EG628211
Downstream geneIl11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310P12.bB6Ng01-310P12.g
ACCGA102805GA102806
length1,1561,041
definitionB6Ng01-310P12.b B6Ng01-310P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,597,915 - 4,599,077)(4,719,034 - 4,719,550)
sequence
gaattcaaggctagcctacagcaagttctagcatagccaaggcaatacag
agaaatcctgtctgaagaaaaacaaaaaaaaaacaaaacaaaacaaccca
aactgaacaaaaacaaataaaagcaaaaactgagaacaacaaactagaaa
aaaaggttaacaataaaatgaaagtgagataatgtggctccctgttgagg
tttgaagggcgagtaggacttatcccaaggctttatatttgatctatcta
gagaaccttatcatacacaacttttacaagaactgaaccatgaagagatg
agctgtgatcctttaaagggcttggccctccctccctgcctcacttccta
gtcccccacgttcagttactgagtagaggtgagagaaggactcacttgta
gcgtagccgctcctccccactggctgggggctcctgggtaacccaggcca
ccatggcctgcaggtgggacggctgtagcaggaagtctaggagcttccga
ttgaccaccttgcactcctgcagcacatcctcctcatccagcagctcagg
caggctcaggtcctccttctccagcagtgtgtccaggtgagagcttgtgt
gcagatcaaacttccaaaacatggcgccctgcaagcatgggcataatcaa
cttgtcacacacatctagctgaatgaggcactgtcacagtgaccaagcac
aaacaccccttctaggcccgacagattcctcacaagtctgccctgcacag
gggctgcacaggtatagcacatatactgtgaacagtcctcagtcctgcta
aggaacccagagcccaccatctcagcctccaagctgcctcccctgcagta
taaaaagccactttatcagtctcagcttaaggcctggtgaagttctcagt
gtggaccatccagggcctacaaggaaagctaagtggcagcagtgaccttg
gcccatccctcagtggcctgtgtccactctcctttatctgggccaagata
ccatttgaacgtctagcttcagattcattttatttgctgaacaaatttca
aatactcccatgacctctagtgcacagctgctgcccatgctagcaaatca
ccaggtcttgtagtgtgggttggtgtcggcaagcagtgagagaggagtat
gctcat
gaattctataaagtcattaattcatccaaacagcattaattcatgaaagt
tcatcttcatgttgatctgcaggaaatctgcccactagtgtatgctgatg
cccaggaaccattaggctatgtaatagtgacaggaaaggcatatcagcag
tgagaagcaatcctgagatgaagtctctaaggaccgtgcatctacgagct
tacccatcacagaccatgaaaacagtgggccatctccagaaaattttact
tgtgtgtcttagcctttcctagatggcttctgacatctcctcccttaaaa
caaaatgaagtgttaatctctctgttacggagattgtacagcagatccta
ggtttctttttcttttcttttcttttcttttcttttcttttcttttcttt
tcttttcttttcttttcttttctttctttcttttctttctttctttcttc
cttccttctttcctttctttctttctttctttctttctttctttctttct
tcctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttcttgttgttgttgttttttcaagaaagggtttct
ctgtatagccctggctgtcctggaattcattttgtagaccaggctggcct
cgaactcagaaatccacctgcctctgcctcccaagtgctgtgattaaagg
cgtgcgccgccaccgcccggcgatcctagatttttgaagatgattggaaa
aagaaacagaagcaaagaaatctgtaaacttgtaaggaaattccataggg
aggttttttttttttaattatttattttatgtatatgagtataccatcgc
tgtcttcagccacaccagaagagggcatcaggatcttgttggtcttgagc
cacatgtggttgctgagatttgaactctggtcctctggaagagctgtcat
tgcttttaatagctgagccattccttcagcctggggagtttttgttttgt
ttttgtttttgtttttttaaccaaattttaactgaattcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4597915_4599077
seq2: B6Ng01-310P12.b_50_1205

seq1  GAATTCAAGGCTAGCCTACAGCAAGTTCTAGCATAGCCAAGGCAATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGCCTACAGCAAGTTCTAGCATAGCCAAGGCAATACAG  50

seq1  AGAAATCCTGTCTGAAGAAAAACAAAAAAAAAACAAAACAAAACAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCTGTCTGAAGAAAAACAAAAAAAAAACAAAACAAAACAACCCA  100

seq1  AACTGAACAAAAACAAATAAAAGCAAAAACTGAGAACAACAAACTAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACAAAAACAAATAAAAGCAAAAACTGAGAACAACAAACTAGAAA  150

seq1  AAAAGGTTAACAATAAAATGAAAGTGAGATAATGTGGCTCCCTGTTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTAACAATAAAATGAAAGTGAGATAATGTGGCTCCCTGTTGAGG  200

seq1  TTTGAAGGGCGAGTAGGACTTATCCCAAGGCTTTATATTTGATCTATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGGCGAGTAGGACTTATCCCAAGGCTTTATATTTGATCTATCTA  250

seq1  GAGAACCTTATCATACACAACTTTTACAAGAACTGAACCATGAAGAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTTATCATACACAACTTTTACAAGAACTGAACCATGAAGAGATG  300

seq1  AGCTGTGATCCTTTAAAGGGCTTGGCCCTCCCTCCCTGCCTCACTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGATCCTTTAAAGGGCTTGGCCCTCCCTCCCTGCCTCACTTCCTA  350

seq1  GTCCCCCACGTTCAGTTACTGAGTAGAGGTGAGAGAAGGACTCACTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCACGTTCAGTTACTGAGTAGAGGTGAGAGAAGGACTCACTTGTA  400

seq1  GCGTAGCCGCTCCTCCCCACTGGCTGGGGGCTCCTGGGTAACCCAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGCCGCTCCTCCCCACTGGCTGGGGGCTCCTGGGTAACCCAGGCCA  450

seq1  CCATGGCCTGCAGGTGGGACGGCTGTAGCAGGAAGTCTAGGAGCTTCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCTGCAGGTGGGACGGCTGTAGCAGGAAGTCTAGGAGCTTCCGA  500

seq1  TTGACCACCTTGCACTCCTGCAGCACATCCTCCTCATCCAGCAGCTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACCTTGCACTCCTGCAGCACATCCTCCTCATCCAGCAGCTCAGG  550

seq1  CAGGCTCAGGTCCTCCTTCTCCAGCAGTGTGTCCAGGTGAGAGCTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAGGTCCTCCTTCTCCAGCAGTGTGTCCAGGTGAGAGCTTGTGT  600

seq1  GCAGATCAAACTTCCAAAACATGGCGCCCTGCAAGCATGGGCATAATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCAAACTTCCAAAACATGGCGCCCTGCAAGCATGGGCATAATCAA  650

seq1  CTTGTCACACACATCTAGCTGAATGAGGCACTGTCACAGTGACCAAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACACACATCTAGCTGAATGAGGCACTGTCACAGTGACCAAGCAC  700

seq1  AAACACCCCTTCTAGGCCCGACAGATTCCTCACAAGTCTGCCCTGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCCCTTCTAGGCCCGACAGATTCCTCACAAGTCTGCCCTGCACAG  750

seq1  GGGCTGCACAGGTATAGCACATATACTGTGAACAGTCCTCAGTCCTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCACAGGTATAGCACATATACTGTGAACAGTCCTCAGTCCTGCTA  800

seq1  AGGAACCCAGAGCCCACCATCTCAGCCTCCAAGCTGCCTCCCCTGCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCCAGAGCCCACCATCTCAGCCTCCAAGCTGCCTCCCCTGCAGTA  850

seq1  TAAAAAGCCACTTTATCAGTCTCAGCTTAAGGCCTGGTGAAGTTCTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCACTTTATCAGTCTCAGCTTAAGGCCTGGTGAAGTTCTCAGT  900

seq1  GTGGACCATCCAGGGCCTACAAGGAAAAGCTAAGTGGCAGGCAGTGACCT  950
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GTGGACCATCCAGGGCCTACAAGG-AAAGCTAAGTGGCA-GCAGTGACCT  948

seq1  TGGCCCATCCCTCAGTGGCCTGTGTCCACTCTCCTTTATCTGGGCAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  TGGCCCATCCCTCAGTGGCCTGTGTCCACTCTCCTTTATCTGGGCCAAGA  998

seq1  TACCATTTGAACGTCTAGCTTCAGATTCATTTTATTTGCTGAACAAA-TT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACCATTTGAACGTCTAGCTTCAGATTCATTTTATTTGCTGAACAAATTT  1048

seq1  CAAATACTCCCATGACCTCTAGTGCACAGCTGCTGCCCATGCTAGCAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTCCCATGACCTCTAGTGCACAGCTGCTGCCCATGCTAGCAAAT  1098

seq1  CACCCAAGGTCTCTGGTGAGGTGTGGGGTGGTGGCGGC-AGCCGGGAGAG  1148
      ||||  ||||||    ||  ||||||| ||||| |||| ||| | |||||
seq2  CACC--AGGTCT----TGTAGTGTGGGTTGGTGTCGGCAAGCAGTGAGAG  1142

seq1  AGGAAGTATGCTCAT  1163
      ||| |||||||||||
seq2  AGG-AGTATGCTCAT  1156

seq1: chr7_4719034_4719550
seq2: B6Ng01-310P12.g_592_1109 (reverse)

seq1  TCGAATTCAGTTAAAATTTGTTTAAAAAAACAAAAACAAAAACAAAAACA  50
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  TCGAATTCAGTTAAAATTTGGTTAAAAAAACAAAAACAAAAAC-AAAACA  49

seq1  AAAACT-CCCAGGCTGAAGGAATGGCTCAGCTATTAAAAGCAATGACAGC  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCCCAGGCTGAAGGAATGGCTCAGCTATTAAAAGCAATGACAGC  99

seq1  TCTTCCAGAGGACCAGAGTTCAAATCTCAGCAACCACATGGTGGCTCAAG  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTCCAGAGGACCAGAGTTCAAATCTCAGCAACCACAT-GTGGCTCAAG  148

seq1  ACCAAC-AGATCCTGATGCCCTCTTCTGGTGTGGCTGAAGACAGCGATGG  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAAGATCCTGATGCCCTCTTCTGGTGTGGCTGAAGACAGCGATGG  198

seq1  TATACTCATATACATAAAATAAATAATT-AAAAAAAAAAACCTCCCTATG  247
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATACTCATATACATAAAATAAATAATTAAAAAAAAAAAACCTCCCTATG  248

seq1  GAATTTCCTTACAAGTTTACAGATTTCTTTGCTTCTGTTTCTTTTTCCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTTACAAGTTTACAGATTTCTTTGCTTCTGTTTCTTTTTCCAA  298

seq1  TCATCTTCAAAAATCTAGGATCGCCGGGCGGTGGCGGCGCACGCCTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCAAAAATCTAGGATCGCCGGGCGGTGGCGGCGCACGCCTTTAA  348

seq1  TCACAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAG  398

seq1  CCTGGTCTACAAAATGAATTCCAGGACAGCCAGGGCTATACAGAGAAACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAATGAATTCCAGGACAGCCAGGGCTATACAGAGAAACC  448

seq1  CTTTCTTGAAAAAACAACAACAACAAGAAAGAAAGAAAGAAAGAAAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGAAAAAACAACAACAACAAGAAAGAAAGAAAGAAAGAAAGAAA  498

seq1  GAAAGAAAGAAAGAAAGAAA  517
      ||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAA  518