BAC Information

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BAC

Clone NameB6Ng01-311F23
Chromosome7 (Build37)
Map Location 20,226,726 - 20,333,065
singlet/doubletdoublet
Overlap geneClptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
Upstream genePsg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb
Downstream geneBcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311F23.bB6Ng01-311F23.g
ACCGA103106GA103107
length838728
definitionB6Ng01-311F23.b B6Ng01-311F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,226,726 - 20,227,558)(20,332,339 - 20,333,065)
sequence
gaattcagcactattcctttgctttgcctgtctcttgctgtgaagttcgt
gctgcctgtgtgggagcatttgagtgtgggcatgtggaggcctgagaaag
acatcagttgcgtttttgtatataccaaggaactagggctcactgggcta
ccttggcacttgacaaggatgctggggacagagactctggtcctcaggtt
aaccactgaaccatctacctacctagctactgttttgtctgagatgtggt
ctggctatatgacctggaatttactgtgtgtgtcctagggtggccttgag
ctcaccatcctctcacctcagccttacaagtgctgggtcagggttactac
cagacgctgctcagtacacttctcaccattaccgtaattaaccaagtggt
ttgtttacttccgcactaagactctgtgcagcaggaaactagaggcacca
cccccatggacaatgctgcccccgcccttaatcactggcttttagaaaaa
agaaggtgccgggcgtggtggcacaggcaggtggatctctgagttcaagg
ccagcctggtctacaaagtgagttccaggacggccagggctaaacagaga
aaccctgtctcgaaaaaacaaaaaacaacaaaacaaaaccccacaaaaaa
aacgaaaaaggaaggctcctttttcttttctttatttctctctcttcttt
tttttttttttccttttggtgatggtatcacacagtccagctggccctga
attctcctaatcagggatgaaaaatgaccttatacatcaggcctccctct
atactcgccaatgttggaatcacaggtttaataccacc
gaattcttagaatccacccgtgtggtacctcatagcagattccacagaac
cccagagcaaaccttgttccccttcccagcctgcgaacggggaaaccgaa
aaggacactctcccaaggttccactcccgtcccttgaaagcctttgaaag
ccagcaacccaatagccaggctgggcaagctccccaaagtgcttcctatt
tcctagacctgtggtgactgtcccttctctgttgaatccctggggggatt
tcctggggctgggccttcccttcgaacgttggggagaggaccttggcctt
tcctaacccatcctactcctatctccacttcctcattccttctctctccc
tctcctttttcttttttcatttccctttccatctctcccttctctctctt
tccgggctctttctcctttctgttctgtttgtccttcctttgctctctcc
atctctcccttgctttccctacatctctttcccctggctctagctgctca
gcctccctgcttcctggcctcctctgggaatggggcttacaccacctgga
cctcctgctggagcctgagcctccctccccactcttccctatctctctct
gctcatctatgtcatccaggcagccccacacagtggcgggggaggggaga
agaggggatggcaggcctggctgtctcttctcgttagggaaggggaactt
gagcagagaagaatggggggagggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20226726_20227558
seq2: B6Ng01-311F23.b_46_883

seq1  GAATTCAGCACTATTCCTTTGCTTTGCCTGTCTCTTGCTGTGAAGTTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTATTCCTTTGCTTTGCCTGTCTCTTGCTGTGAAGTTCGT  50

seq1  GCTGCCTGTGTGGGAGCATTTGAGTGTGGGCATGTGGAGGCCTGAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGTGTGGGAGCATTTGAGTGTGGGCATGTGGAGGCCTGAGAAAG  100

seq1  ACATCAGTTGCGTTTTTGTATATACCAAGGAACTAGGGCTCACTGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTTGCGTTTTTGTATATACCAAGGAACTAGGGCTCACTGGGCTA  150

seq1  CCTTGGCACTTGACAAGGATGCTGGGGACAGAGACTCTGGTCCTCAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCACTTGACAAGGATGCTGGGGACAGAGACTCTGGTCCTCAGGTT  200

seq1  AACCACTGAACCATCTACCTACCTAGCTACTGTTTTGTCTGAGATGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGAACCATCTACCTACCTAGCTACTGTTTTGTCTGAGATGTGGT  250

seq1  CTGGCTATATGACCTGGAATTTACTGTGTGTGTCCTAGGGTGGCCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATATGACCTGGAATTTACTGTGTGTGTCCTAGGGTGGCCTTGAG  300

seq1  CTCACCATCCTCTCACCTCAGCCTTACAAGTGCTGGGTCAGGGTTACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATCCTCTCACCTCAGCCTTACAAGTGCTGGGTCAGGGTTACTAC  350

seq1  CAGACGCTGCTCAGTACACTTCTCACCATTACCGTAATTAACCAAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGCTGCTCAGTACACTTCTCACCATTACCGTAATTAACCAAGTGGT  400

seq1  TTGTTTACTTCCGCACTAAGACTCTGTGCAGCAGGAAACTAGAGGCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTTCCGCACTAAGACTCTGTGCAGCAGGAAACTAGAGGCACCA  450

seq1  CCCCCATGGACAATGCTGCCCCCGCCCTTAATCACTGGCTTTTAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGGACAATGCTGCCCCCGCCCTTAATCACTGGCTTTTAGAAAAA  500

seq1  AGAAGGTGCCGGGCGTGGTGGCACAGGCAGGTGGATCTCTGAGTTCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGCCGGGCGTGGTGGCACAGGCAGGTGGATCTCTGAGTTCAAGG  550

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACGGCCAGGGCTAAACAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAAAGTGAGTTCCAGGACGGCCAGGGCTAAACAGAGA  600

seq1  AACCCTGTCTCGAAAAAACAAAAAACAACAAAACAAAACCCCAC-AAAAA  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACCCTGTCTCGAAAAAACAAAAAACAACAAAACAAAACCCCACAAAAAA  650

seq1  AACGAAAAAGGAAGGCTCC-TTTTCTTTTCTTTATTTCTCTCTCTTCTTT  698
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACGAAAAAGGAAGGCTCCTTTTTCTTTTCTTTATTTCTCTCTCTTCTTT  700

seq1  TTTTTTTTTTCTTTTTTGGTGATGGTATCACACAGTCCAGCTGGCCCTGA  748
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCCTTTTGGTGATGGTATCACACAGTCCAGCTGGCCCTGA  750

seq1  ATTC-CCTAATCAGGGATGAAGAATGACCTTGAACATCAGGTCCTCCC-C  796
      |||| |||||||||||||||| |||||||||  |||||||| |||||| |
seq2  ATTCTCCTAATCAGGGATGAAAAATGACCTTATACATCAGG-CCTCCCTC  799

seq1  TA-CCCCGCCAATGTTGGAATCACAGGTTT-ATACCACC  833
      ||  | |||||||||||||||||||||||| ||||||||
seq2  TATACTCGCCAATGTTGGAATCACAGGTTTAATACCACC  838

seq1: chr7_20332339_20333065
seq2: B6Ng01-311F23.g_67_794 (reverse)

seq1  CTCCCCCTCCCCCATTTCTTCTCTGCTC-AGTTCCCCTTCCCTAACGAGA  49
      |||||||||||||  ||||||||||||| |||||||||||||||||||||
seq2  CTCCCCCTCCCCCCATTCTTCTCTGCTCAAGTTCCCCTTCCCTAACGAGA  50

seq1  AGAGACAGCCAGGCCTGCCATCCCCTCTTCTCCCCTCCCCCGCCACTGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGCCAGGCCTGCCATCCCCTCTTCTCCCCTCCCCCGCCACTGTG  100

seq1  TGGGGCTGCCTGGATGACATAGATGAGCAGAGAGAGATAGGGAAGAGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCCTGGATGACATAGATGAGCAGAGAGAGATAGGGAAGAGTGG  150

seq1  GGAGGGAGGCTCAGGCTCCAGCAGGAGGTCCAGGTGGTGTAAGCCCCATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGCTCAGGCTCCAGCAGGAGGTCCAGGTGGTGTAAGCCCCATT  200

seq1  CCCAGAGGAGGCCAGGAAGCAGGGAGGCTGAGCAGCTAGAGCCAGGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGAGGCCAGGAAGCAGGGAGGCTGAGCAGCTAGAGCCAGGGGAA  250

seq1  AGAGATGTAGGGAAAGCAAGGGAGAGATGGAGAGAGCAAAGGAAGGACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTAGGGAAAGCAAGGGAGAGATGGAGAGAGCAAAGGAAGGACAA  300

seq1  ACAGAACAGAAAGGAGAAAGAGCCCGGAAAGAGAGAGAAGGGAGAGATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGAAAGGAGAAAGAGCCCGGAAAGAGAGAGAAGGGAGAGATGG  350

seq1  AAAGGGAAATGAAAAAAGAAAAAGGAGAGGGAGAGAGAAGGAATGAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAATGAAAAAAGAAAAAGGAGAGGGAGAGAGAAGGAATGAGGAA  400

seq1  GTGGAGATAGGAGTAGGATGGGTTAGGAAAGGCCAAGGTCCTCTCCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATAGGAGTAGGATGGGTTAGGAAAGGCCAAGGTCCTCTCCCCAA  450

seq1  CGTTCGAAGGGAAGGCCCAGCCCCAGGAAATCCCCCCAGGGATTCAACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCGAAGGGAAGGCCCAGCCCCAGGAAATCCCCCCAGGGATTCAACAG  500

seq1  AGAAGGGACAGTCACCACAGGTCTAGGAAATAGGAAGCACTTTGGGGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACAGTCACCACAGGTCTAGGAAATAGGAAGCACTTTGGGGAGC  550

seq1  TTGCCCAGCCTGGCTATTGGGTTGCTGGCTTTCAAAGGCTTTCAAGGGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGCCTGGCTATTGGGTTGCTGGCTTTCAAAGGCTTTCAAGGGAC  600

seq1  GGGAGTGGAACCTTGGGAGAGTGTCCTTTTCGGTTTCCCCGTTCGCAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGAACCTTGGGAGAGTGTCCTTTTCGGTTTCCCCGTTCGCAGGC  650

seq1  TGGGAAGGGGAACAAGGTTTGCTCTGGGGTTCTGTGGAATCTGCTATGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGGGAACAAGGTTTGCTCTGGGGTTCTGTGGAATCTGCTATGAG  700

seq1  GTACCACACGGGTGGATTCTAAGAATTC  727
      ||||||||||||||||||||||||||||
seq2  GTACCACACGGGTGGATTCTAAGAATTC  728