BAC Information

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BAC

Clone NameB6Ng01-311H04
Chromosome7 (Build37)
Map Location 79,660,729 - 79,762,449
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665535, Mctp2, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311H04.bB6Ng01-311H04.g
ACCGA103163GA103164
length1,1671,096
definitionB6Ng01-311H04.b B6Ng01-311H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,761,273 - 79,762,449)(79,660,729 - 79,661,830)
sequence
gaattccagttttgtttccagggcatccacttctgaatgaatacacaaga
aagctttaggaaaggacgaggttccagaacacaagaacccaagcacctta
tactcaagaaaagtgtacttaaattaaaaataccaatgttgttctatgat
gtcaccaagaaatatatctataatatattatgcaacagaaatttcaaata
ttgtcttccaccacaatatgagtcctgatttgttttctattgtggtgaaa
taacaatctcattaaaaaaaaaaaacttggggaggaaagagtttatttga
ctgacatttccatgtcacagttcatcactgagggaagttggggcaggaaa
tcatgcaggaacttggagacaagaaatgatgaagaggacatggaggggtg
ctatttactggcttgctccctgtggtttgcttgctcagcctggtttttca
tataacctagcaccactttcccagggtgccaccaactactgtgagctgga
ttatctatatcaatcattacccaggaaaatacccccagagaattgtctga
tggagacattttctcaattgacattccctcttcctaaatgaccctggctt
gtgtcaactttaaaaacacaaatccacatgatatattaaaagttacggtt
atgcataaccccaaacacatgcaaaaaattccatcataaaggaattacag
actatattattgcagtgatacgaagtaccaagggaggtgaaagtaatagg
aaaatatcagaaaacatgttgcttctggagggttaaagtaggatttcact
ggtaagaggtctaggagaactttcgggataatttaccattttatgtcttt
atcagagattgagtcttcaaaatttcaaaagttgacaaatacaagctaga
aaatgtgttataccttgttcataaaagccactaaaggaacagctattaac
aagcatctcacagtagtgaggtctgtgtgatgaactagagacctgtcaat
aatgcttcagaatacatagaagatgatcacacagagtttatagattactt
tctgattagaagagttcaacagtaccaaacatttcaggttaggaatgaga
atgagtgggaacctgaccagtctctttcctccttaatctcctcatgtcca
taatttgaatgatagac
gaattcatgtagctcaggcttgtctggaactcagtatgtacctaaggatg
atactgaatttatgatcctcctgcctctacctacaaagggctgggataac
aagtgtcttctggcaagagcaagagtgagcccaggatcttcgtgcacact
cgctaagcagtcttccaattaggctatattcccaaccccatatatatttt
gctcctatttatgtacttgtaactatttgcattgtttgagctgtttggct
gaaacatggtaggatagggagcgacaatgccagtcttcttatcccagcct
acttaccatcaatggcatcaaatcagaggcctacagccaaccctcagtga
catcaaatcagaggcctacagccaaccctcagtgacatcaaatcagaggc
ctacagccaacctcagtgacatcaaatgagaggcctacagccaacctcag
tgacatcaaatcagaggcctacagccaacctcagtgacatcaaaccagag
gccgacagcctacctcagtgcttgtacactgaggattgtcaaatgccaaa
atacaagcttggtttactattttgtttgttgtctgcacttaagaaaactg
gtatggagaaaacatttttaattcacagtaaatctaagttctgtagttac
tacattaacaattttataaaatgtattgatgagtttgtgtgcattctatt
cacctaaataaaaaacatctacgatggttcacactgagggaaacctggtc
agacataagatcactctgaggaaaaccacaaaacatgatttacaatgacg
atatttgtaaaatttaatccttggttgtcaatattttgctaaatagcctt
taatattgatttatataggaatatagagttcataaaaaatacggacatgt
acacaggcatgtggattttagtgttttttaaagttacactttccttactt
attttgtgttgtatgtggatgtttgtggatgcagccagtggaggtcagag
gacaaactgcaggattgcaattctctctattctgtgggtccagagactga
cctcaagttgagcacagtgtcttggctgcctggcaatcttactggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_79761273_79762449
seq2: B6Ng01-311H04.b_45_1211 (reverse)

seq1  GTCTATCAATCCAATTATAGACATGAGTGAAAGATTTAGGAGGAAAGAGA  50
      |||||||| || |||||| ||||||||    ||||| |||||||||||||
seq2  GTCTATCATTCAAATTATGGACATGAG---GAGATTAAGGAGGAAAGAGA  47

seq1  CTGGGTTCAAGTT-CCACTCATTCTCATTCTTAAACTG-AATGTTTGGTT  98
      ||||  ||| ||| |||||||||||||||| ||| ||| ||||||||| |
seq2  CTGG--TCAGGTTCCCACTCATTCTCATTCCTAACCTGAAATGTTTGG-T  94

seq1  ACTG-TGAACTCTTCTTAATTCAGAAGTTTATCTATAAACTCTGTGTGAT  147
      |||| |||||||||||  | ||||||  | ||||||||||||||||||| 
seq2  ACTGTTGAACTCTTCT--AATCAGAAAGTAATCTATAAACTCTGTGTGA-  141

seq1  TCATCTTTTCTATGTATTTCTGAAGCATTATTGACAGGTCTCTAGTTCAT  197
      |||||  ||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATC--TTCTATGTA-TTCTGAAGCATTATTGACAGGTCTCTAGTTCAT  188

seq1  CACACAGACCTCACTACTGTGAGATGCTTGTTAATAGCTGTTCCTTTAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACCTCACTACTGTGAGATGCTTGTTAATAGCTGTTCCTTTAGT  238

seq1  GGCTTTTATGAACAAGGTATAACACATTTTCTAGCTTTGTATTTGTCAAC  297
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCTTTTATGAACAAGGTATAACACATTTTCTAGC-TTGTATTTGTCAAC  287

seq1  TTTTGAAATTTTGAAGACTCAATCTCTGATAAAGACATAAAATGGTAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATTTTGAAGACTCAATCTCTGATAAAGACATAAAATGGTAAAT  337

seq1  TATCCCGAAAGTTCTCCTAGACCTCTTACCAGTGAAATCCTACTTTAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGAAAGTTCTCCTAGACCTCTTACCAGTGAAATCCTACTTTAACC  387

seq1  CTCCAGAAGCAACATGTTTTCTGATATTTTCCTATTACTTTCACCTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGCAACATGTTTTCTGATATTTTCCTATTACTTTCACCTCCCT  437

seq1  TGGTACTTCGTATCACTGCAATAATATAGTCTGTAATTCCTTTATGATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTCGTATCACTGCAATAATATAGTCTGTAATTCCTTTATGATGG  487

seq1  AATTTTTTGCATGTGTTTGGGGTTATGCATAACCGTAACTTTTAATATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTGCATGTGTTTGGGGTTATGCATAACCGTAACTTTTAATATAT  537

seq1  CATGTGGATTTGTGTTTTTAAAGTTGACACAAGCCAGGGTCATTTAGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGATTTGTGTTTTTAAAGTTGACACAAGCCAGGGTCATTTAGGAA  587

seq1  GAGGGAATGTCAATTGAGAAAATGTCTCCATCAGACAATTCTCTGGGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGTCAATTGAGAAAATGTCTCCATCAGACAATTCTCTGGGGGT  637

seq1  ATTTTCCTGGGTAATGATTGATATAGATAATCCAGCTCACAGTAGTTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGGGTAATGATTGATATAGATAATCCAGCTCACAGTAGTTGGT  687

seq1  GGCACCCTGGGAAAGTGGTGCTAGGTTATATGAAAAACCAGGCTGAGCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTGGGAAAGTGGTGCTAGGTTATATGAAAAACCAGGCTGAGCAA  737

seq1  GCAAACCACAGGGAGCAAGCCAGTAAATAGCACCCCTCCATGTCCTCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCACAGGGAGCAAGCCAGTAAATAGCACCCCTCCATGTCCTCTTC  787

seq1  ATCATTTCTTGTCTCCAAGTTCCTGCATGATTTCCTGCCCCAACTTCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTTGTCTCCAAGTTCCTGCATGATTTCCTGCCCCAACTTCCCT  837

seq1  CAGTGATGAACTGTGACATGGAAATGTCAGTCAAATAAACTCTTTCCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGAACTGTGACATGGAAATGTCAGTCAAATAAACTCTTTCCTCC  887

seq1  CCAAGTTTTTTTTTTTTAATGAGATTGTTATTTCACCACAATAGAAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTTTTTTTTTAATGAGATTGTTATTTCACCACAATAGAAAACA  937

seq1  AATCAGGACTCATATTGTGGTGGAAGACAATATTTGAAATTTCTGTTGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGACTCATATTGTGGTGGAAGACAATATTTGAAATTTCTGTTGCA  987

seq1  TAATATATTATAGATATATTTCTTGGTGACATCATAGAACAACATTGGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTATAGATATATTTCTTGGTGACATCATAGAACAACATTGGTA  1037

seq1  TTTTTAATTTAAGTACACTTTTCTTGAGTATAAGGTGCTTGGGTTCTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTAAGTACACTTTTCTTGAGTATAAGGTGCTTGGGTTCTTGT  1087

seq1  GTTCTGGAACCTCGTCCTTTCCTAAAGCTTTCTTGTGTATTCATTCAGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAACCTCGTCCTTTCCTAAAGCTTTCTTGTGTATTCATTCAGAA  1137

seq1  GTGGATGCCCTGGAAACAAAACTGGAATTC  1177
      ||||||||||||||||||||||||||||||
seq2  GTGGATGCCCTGGAAACAAAACTGGAATTC  1167

seq1: chr7_79660729_79661830
seq2: B6Ng01-311H04.g_64_1159

seq1  GAATTCATGTAGCTCAGGCTTGTCTGGAACTCAGTATGTACCTAAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGCTCAGGCTTGTCTGGAACTCAGTATGTACCTAAGGATG  50

seq1  ATACTGAATTTATGATCCTCCTGCCTCTACCTACAAAGGGCTGGGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAATTTATGATCCTCCTGCCTCTACCTACAAAGGGCTGGGATAAC  100

seq1  AAGTGTCTTCTGGCAAGAGCAAGAGTGAGCCCAGGATCTTCGTGCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTTCTGGCAAGAGCAAGAGTGAGCCCAGGATCTTCGTGCACACT  150

seq1  CGCTAAGCAGTCTTCCAATTAGGCTATATTCCCAACCCCATATATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAGCAGTCTTCCAATTAGGCTATATTCCCAACCCCATATATATTTT  200

seq1  GCTCCTATTTATGTACTTGTAACTATTTGCATTGTTTGAGCTGTTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATTTATGTACTTGTAACTATTTGCATTGTTTGAGCTGTTTGGCT  250

seq1  GAAACATGGTAGGATAGGGAGCGACAATGCCAGTCTTCTTATCCCAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGGTAGGATAGGGAGCGACAATGCCAGTCTTCTTATCCCAGCCT  300

seq1  ACTTACCATCAATGGCATCAAATCAGAGGCCTACAGCCAACCCTCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCATCAATGGCATCAAATCAGAGGCCTACAGCCAACCCTCAGTGA  350

seq1  CATCAAATCAGAGGCCTACAGCCAACCCTCAGTGACATCAAATCAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATCAGAGGCCTACAGCCAACCCTCAGTGACATCAAATCAGAGGC  400

seq1  CTACAGCCAACCTCAGTGACATCAAATGAGAGGCCTACAGCCAACCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCAACCTCAGTGACATCAAATGAGAGGCCTACAGCCAACCTCAG  450

seq1  TGACATCAAATCAGAGGCCTACAGCCAACCTCAGTGACATCAAACCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAAATCAGAGGCCTACAGCCAACCTCAGTGACATCAAACCAGAG  500

seq1  GCCGACAGCCTACCTCAGTGCTTGTACACTGAGGATTGTCAAATGCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACAGCCTACCTCAGTGCTTGTACACTGAGGATTGTCAAATGCCAAA  550

seq1  ATACAAGCTTGGTTTACTATTTTGTTTGTTGTCTGCACTTAAGAAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCTTGGTTTACTATTTTGTTTGTTGTCTGCACTTAAGAAAACTG  600

seq1  GTATGGAGAAAACATTTTTAATTCACAGTAAATCTAAGTTCTGTAGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGAAAACATTTTTAATTCACAGTAAATCTAAGTTCTGTAGTTAC  650

seq1  TACATTAACAATTTTATAAAATGTATTGATGAGTTTGTGTGCATTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAACAATTTTATAAAATGTATTGATGAGTTTGTGTGCATTCTATT  700

seq1  CACCTAAATAAAAAACATCTACGATGGTTCACACTGAGGGAAACCTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAATAAAAAACATCTACGATGGTTCACACTGAGGGAAACCTGGTC  750

seq1  AGACATAAGATCACTCTGAGGAAAACCACAAAACATGATTTACAATGACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAGATCACTCTGAGGAAAACCACAAAACATGATTTACAATGACG  800

seq1  ATATTTGTAAAATTTAATCCTTGGTTGTCAATATTTTGCTAAATAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAAAATTTAATCCTTGGTTGTCAATATTTTGCTAAATAGCCTT  850

seq1  TAATATTGATTTATATAGGAATATAGAGTTCATAAAAAATACGGACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGATTTATATAGGAATATAGAGTTCATAAAAAATACGGACATGT  900

seq1  ACACAGGCATGTGGATTTTAGTGTTTTTTAAAGTTACACTTTCCTTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGCATGTGGATTTTAGTGTTTTTTAAAGTTACACTTTCCTTACTT  950

seq1  ATTTTGTGTTTGTATGTGGATGTTTGTGGATGCAGGCCAGTGGAGGTCAG  1000
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTGTG-TTGTATGTGGATGTTTGTGGATGCA-GCCAGTGGAGGTCAG  998

seq1  AGGACAAACTGCAGGA-TGCAATTCTCTCCTATTCTGTGGGTCCCAGAGA  1049
      |||||||||||||||| ||||||||||| ||||||||||||| |||||||
seq2  AGGACAAACTGCAGGATTGCAATTCTCT-CTATTCTGTGGGT-CCAGAGA  1046

seq1  CTGGACTCAGGTTTGAGCACAGGTGCCCTTGGCTGCTGAGCCATCTTACT  1099
      |||  |||| | ||||||||| |||  |||||||||   || ||||||||
seq2  CTGACCTCAAG-TTGAGCACA-GTG-TCTTGGCTGCCTGGCAATCTTACT  1093

seq1  GGT  1102
      |||
seq2  GGT  1096