BAC Information

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BAC

Clone NameB6Ng01-311H22
Chromosome7 (Build37)
Map Location 6,719,066 - 6,719,908
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneLOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311H22.bB6Ng01-311H22.g
ACCGA103198GA103199
length1,229845
definitionB6Ng01-311H22.b B6Ng01-311H22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcgaatggctgagaggcacctgaaaaaatg
ttcaacaacatccttaatcatcagggaaatgcaaatcaaaacaatgctga
gattccacctctcacccgtcagaatggataagatcagaaattcatgtgat
agcagattctggcaaggatgtagagaaagaggaacactcctccattgttg
gtgggattgcaagcttgtacaaccactctggaaatcagtctggtggttcc
tcagaaaattggacatagtactactggaggatccagcaatacctctcctg
ggaatatatccagaagatgttccaactggtaataagaacacatgcttcac
tatgttcataacacccttatttagaataaccagaagctggaaagaaccca
gatgtccctcaacagaggaatggatacagaaaatgtggcacatttaaaca
atggaatactactcagctattaaaaacaatgaatttatgcaattcccagg
caaatggatggatctggagggtttcatcctgagtgaggtaaccgaatcac
aaaagaactcacatgacatgcactcactgataagtggatattagcacaga
aacttaaaatacccaagatacaatttgcaaaacacctgaaactcaagaat
aagaaagaccaaagtgtggatacttcaccccttgttagaactgggaacaa
aaatacccatggaaggagttacagagacaaagtttggagctaagacgaaa
ggatggaccatccagagactgccccacccggggatccatgccataatcaa
acaccaaaagcagacactaatgtatacgccagcaagattttgctgaaagg
accctgatatagttgtctcatgtgaggctatgccagtgcctgggcaaaca
cagaagtggatgctcacagtcacctattggatggaatacaaggcccccaa
tggagggagctagagaaagtactcaaggagctgaaagagtttgcaaccta
tagtgaaacacaatatgaactaaccagtaccccagagctcatgttctctt
atcttggttagaagtatgctgatattatttaatattcaaggcttatgacc
gactccgaagctgaacagttaccccaaggtcttcaggaagaatgttagtg
ccacaggcatggaatccatctgggatttaagtatggaaacctcagtgaga
accatcgtgcccccatttgtgcacttggc
ggaactttgaactatgcttacaaaacagcccttaaagattcctctgctaa
gactctgtacagacgatctccttcaagatacaatctctgtgtgtttgtat
ataggggtggtagagctgagggtgcccttgggtgcacatgttcatggaag
ccaaagggcaaactcagatgctattctcagtcactattcaccttaaaagg
aaaaaaagaaaaaaagaaaaaagaaaaaaacacagaatctctcagtggcc
tagaactcaacaagtaggttaggctacctggccaaagatccctactgctc
tattttggcagcactggggttacaagtgcacagcacccgcctctcctccc
cccaccccccaacccccagattttgttggtctgtttgcttgtttgtcatt
aacatagttctgggcattgaactcatgttctcctgattctgaagcaagcc
ctttgactgaggcaggaactcttagaatatccattccactggggcttagg
aagatgaaataaactgatgttggggaaaccaataacagaggaggttgatg
gcctactggacagtcaggcgaatgctgagaggcgtggtcttcagtctaat
gggcactggccagtttcaagcaaggaggtgatgccctccaattttcctct
ttgagaagatccctgtggctgccaagtgctgagtttcatcagaggccact
caagtcggggagtgagggagacacagggttgaccaggaacacaggtacag
ccatggagacatggagatgaagggcatgggggagacctgttcatggaaca
gctgagttactgtgtaggacgttagggctgatggcagatgggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6719066_6719908
seq2: B6Ng01-311H22.g_74_918 (reverse)

seq1  CTTCCCATCCTGCCATCAGCCCT-ACGTCCTACACAGTAACTCAGCTGTT  49
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCCCAT-CTGCCATCAGCCCTAACGTCCTACACAGTAACTCAGCTGTT  49

seq1  CCCTGTACAGGTCTCCCCCATGCCCCTTCATCTCCATGTCTCCATGGCTG  99
      || || |||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATGAACAGGTCTCCCCCATG-CCCTTCATCTCCATGTCTCCATGGCTG  98

seq1  TACCTGTGTTCCTGGTC-ACCCTGTGTCTCCCTCACTCCCCGACTTGAGT  148
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACCTGTGTTCCTGGTCAACCCTGTGTCTCCCTCACTCCCCGACTTGAGT  148

seq1  GGCCTCTGATG-AACTCAGCACTTGGCAGCCACAGGGATCTTCTC-AAGA  196
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GGCCTCTGATGAAACTCAGCACTTGGCAGCCACAGGGATCTTCTCAAAGA  198

seq1  GGAAAATTGGAGGGCATCACCTCCTTGCTTGAAACTGGCCAGTGCCCATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTGGAGGGCATCACCTCCTTGCTTGAAACTGGCCAGTGCCCATT  248

seq1  AGACTGAAGACCACGCCTCTCAGCATTCGCCTGACTGTCCAGTAGGCCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGACCACGCCTCTCAGCATTCGCCTGACTGTCCAGTAGGCCAT  298

seq1  CAACCTCCTCTGTTATTGGTTTCCCCAACATCAGTTTATTTCATCTTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCTCTGTTATTGGTTTCCCCAACATCAGTTTATTTCATCTTCCT  348

seq1  AAGCCCCAGTGGAATGGATATTCTAAGAGTTCCTGCCTCAGTCAAAGGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGTGGAATGGATATTCTAAGAGTTCCTGCCTCAGTCAAAGGGC  398

seq1  TTGCTTCAGAATCAGGAGAACATGAGTTCAATGCCCAGAACTATGTTAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGAATCAGGAGAACATGAGTTCAATGCCCAGAACTATGTTAAT  448

seq1  GACAAACAAGCAAACAGACCAACAAAATCTGGGGGTTGGGGGGTGGGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAAGCAAACAGACCAACAAAATCTGGGGGTTGGGGGGTGGGGGG  498

seq1  AGGAGAGGCGGGTGCTGTGCACTTGTAACCCCAGTGCTGCCAAAATAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCGGGTGCTGTGCACTTGTAACCCCAGTGCTGCCAAAATAGAG  548

seq1  CAGTAGGGATCTTTGGCCAGGTAGCCTAACCTACTTGTTGAGTTCTAGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGATCTTTGGCCAGGTAGCCTAACCTACTTGTTGAGTTCTAGGC  598

seq1  CACTGAGAGATTCTGTGTTTTTTTCTTTTTTCTTTTTTTCTTTTTTTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAGATTCTGTGTTTTTTTCTTTTTTCTTTTTTTCTTTTTTTCCT  648

seq1  TTTAAGGTGAATAGTGACTGAGAATAGCATCTGAGTTTGCCCTTTGGCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTGAATAGTGACTGAGAATAGCATCTGAGTTTGCCCTTTGGCTT  698

seq1  CCATGAACATGTGCACCCAAGGGCACCCTCAGCTCTACCACCCCTATATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACATGTGCACCCAAGGGCACCCTCAGCTCTACCACCCCTATATA  748

seq1  CAAACACACAGAGATTGTATCTTGAAGGAGATCGTCTGTACAGAGTCTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACAGAGATTGTATCTTGAAGGAGATCGTCTGTACAGAGTCTTA  798

seq1  GCAGAGGAATCTTTAAGGGCTGTTTTGTAAGCATAGTTCAAAGTTCC  843
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAATCTTTAAGGGCTGTTTTGTAAGCATAGTTCAAAGTTCC  845