BAC Information

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BAC

Clone NameB6Ng01-311I18
Chromosome7 (Build37)
Map Location 109,178,854 - 109,351,857
singlet/doubletdoublet
Overlap geneRnf121, Trpc2, Art5, Art1, Chrna10, Nup98
Upstream geneLOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp
Downstream geneFrag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311I18.bB6Ng01-311I18.g
ACCGA103238GA103239
length1,1481,075
definitionB6Ng01-311I18.b B6Ng01-311I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,178,854 - 109,180,010)(109,350,770 - 109,351,857)
sequence
gaattcaacactttttctggtctctccaggctcctgcatgtatacatgca
tgcaaaacattcataaacataagattaaaataaatactcaagttctttaa
atttttttccctcttgttgcagggtatttgattgcactgtataacctgag
cagtcaggactgcttgacttcttcagctcatctgtggcaagagggcctga
aacctggtgtagatcttctagaaggcctatgacaacaggaagcaacaagc
cctcattgctagagctgtgcccttgttaacggaagacatgctgaccagaa
cagtactaaatgaaagaacctacatgaccaacaatggagcaggacttagc
tacccacaggataccattctagaactatttccctgaagtctggcaagcgg
aagggcaggcacacaggcagaactacctgtggactgagaacacacggaac
agaacgtgttcctgaaggagtggggcttccaggacagggtgttgcacaca
ctcatcagtgtggactcagcctctcacccctcggctgtccgactacatga
aggtccctgcagtgctctctgttgtgtttcttctcttgaagctcacaggg
ttctagcctaagaatttgcaaaccttttctgttaaggaccagataaatat
tttatattttatggcccaattagtctctatcacaactattcaactctgtt
gcttgagtgcaaaatcagtttcagacagttaacaaattatatgaatgact
atgtcctaagtgtgatggtacaggcccacagtccctgcactgaggaggct
gagtaggaagaggccaagtctgaggtcagtctggactacaaatggaaaac
agtatttgtttattacaacacatgataggctgatttgaccaaaaggtaaa
gtttgctagtcccaggtctgtacagatgaaattatgaggaactggttttt
ctgcttactcttgttatacttttgcactgataccaaatgttggaaaatac
agcaaaacatgatttggactctgcttttgttgatactcagacattccatg
ttttctgcacttgggaacattgttctcttctagttaccaggacttctaga
cattcctcctaaataccaaggaaaatgtcaggcagggttactcacttg
gaattcaatgactgttcatacagtttggggtcgtttccttgattgctgct
taggttctagttttttgtttttgttgttgttgtattggagattgaaccta
gggtcagagtatgcttagctagtttggttttccaagacaggagtttcaat
gtgtagccatggctgacctgtaacttgctctgtaaaccaggctggccttg
aattcaaaggagatctgactgcctctgcttccttgtgtgctgggattaaa
ggcctgtaccaccactgccacccagctctctatttactttttgaattagg
gtgtaagtttcttagccttgccttgaactctctagttcagataggccttg
aacttgtgatcatcttgccttagcctctagaaggtgagattggttacacc
aggcctagccattgtagttttattatgaaagtagtttgggctctatggat
caactgaaaaataaatcttaaacttatagatatttgggtcacaatttgaa
gacattgatcttggacagtgatttttatactgattaaaaagctgctttgg
aagtggagggttctactataccctctgctctttatttcataagacagccg
ccccttatctgtcttttctttctttttttctaattagctaaagattcttt
aaattgccaagcaatgctggcacatgcctttaatcccagcattcaggagg
cagaggcagttaatctctgagttcaaattgaatctgaattttggctgcct
attcgtgaaggaaacagtttatcctcctgtaatatgtctatcaccattat
tcattacttggtcatacttcctttgatacagtggtttgctaatatctgca
catctgacctcttgtcagagttttttttttcttttttttcttagatttat
ttattttattatatgtaagtacactgtagctgttcttcagacactcagag
aggggagtcagatctcttatgatagtttgtgagcacatgttggtgtggga
tttgactcttgacctcgggaagagcagttcgtgctcttactcactggacc
atctaccagaccatgtagatccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109178854_109180010
seq2: B6Ng01-311I18.b_44_1191

seq1  GAATTCAACACTTTTTCTGGTCTCTCCAGGCTCCTGCATGTATACATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTTTTTCTGGTCTCTCCAGGCTCCTGCATGTATACATGCA  50

seq1  TGCAAAACATTCATAAACATAAGATTAAAATAAATACTCAAGTTCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACATTCATAAACATAAGATTAAAATAAATACTCAAGTTCTTTAA  100

seq1  ATTTTTTTCCCTCTTGTTGCAGGGTATTTGATTGCACTGTATAACCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCCTCTTGTTGCAGGGTATTTGATTGCACTGTATAACCTGAG  150

seq1  CAGTCAGGACTGCTTGACTTCTTCAGCTCATCTGTGGCAAGAGGGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGACTGCTTGACTTCTTCAGCTCATCTGTGGCAAGAGGGCCTGA  200

seq1  AACCTGGTGTAGATCTTCTAGAAGGCCTATGACAACAGGAAGCAACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTGTAGATCTTCTAGAAGGCCTATGACAACAGGAAGCAACAAGC  250

seq1  CCTCATTGCTAGAGCTGTGCCCTTGTTAACGGAAGACATGCTGACCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTGCTAGAGCTGTGCCCTTGTTAACGGAAGACATGCTGACCAGAA  300

seq1  CAGTACTAAATGAAAGAACCTACATGACCAACAATGGAGCAGGACTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTAAATGAAAGAACCTACATGACCAACAATGGAGCAGGACTTAGC  350

seq1  TACCCACAGGATACCATTCTAGAACTATTTCCCTGAAGTCTGGCAAGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAGGATACCATTCTAGAACTATTTCCCTGAAGTCTGGCAAGCGG  400

seq1  AAGGGCAGGCACACAGGCAGAACTACCTGTGGACTGAGAACACACGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGCACACAGGCAGAACTACCTGTGGACTGAGAACACACGGAAC  450

seq1  AGAACGTGTTCCTGAAGGAGTGGGGCTTCCAGGACAGGGTGTTGCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTGTTCCTGAAGGAGTGGGGCTTCCAGGACAGGGTGTTGCACACA  500

seq1  CTCATCAGTGTGGACTCAGCCTCTCACCCCTCGGCTGTCCGACTACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGTGTGGACTCAGCCTCTCACCCCTCGGCTGTCCGACTACATGA  550

seq1  AGGTCCCTGCAGTGCTCTCTGTTGTGTTTCTTCTCTTGAAGCTCACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTGCAGTGCTCTCTGTTGTGTTTCTTCTCTTGAAGCTCACAGGG  600

seq1  TTCTAGCCTAAGAATTTGCAAACCTTTTCTGTTAAGGACCAGATAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTAAGAATTTGCAAACCTTTTCTGTTAAGGACCAGATAAATAT  650

seq1  TTTATATTTTATGGCCCAATTAGTCTCTATCACAACTATTCAACTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATGGCCCAATTAGTCTCTATCACAACTATTCAACTCTGTT  700

seq1  GCTTGAGTGCAAAATCAGTTTCAGACAGTTAACAAATTATATGAATGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTGCAAAATCAGTTTCAGACAGTTAACAAATTATATGAATGACT  750

seq1  ATGTCCTAAGTGTGATGGTACAGGCCCACAGTCCCTGCACTGAGGAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTAAGTGTGATGGTACAGGCCCACAGTCCCTGCACTGAGGAGGCT  800

seq1  GAGTAGGAAGAGGCCAAGTCTGAGGTCAGTCTGGACTACAAATGGAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAAGAGGCCAAGTCTGAGGTCAGTCTGGACTACAAATGGAAAAC  850

seq1  AGTATTTGTTTTATTACAACACATGATAGGCTGATTTGACCAAAAGGTAA  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTG-TTTATTACAACACATGATAGGCTGATTTGACCAAAAGGTAA  899

seq1  AGTTTGCTAGTCCCAGGTCTGTACAGATGAAATTATGAGGAACTGG-TTT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTTTGCTAGTCCCAGGTCTGTACAGATGAAATTATGAGGAACTGGTTTT  949

seq1  TCTGCTTACTCTTGTTATACTTTTGCACTGAATACCAAATGTTGGAAAAT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGCTTACTCTTGTTATACTTTTGCACTG-ATACCAAATGTTGGAAAAT  998

seq1  ACAAGCAAAACAATGATTTGGGACTCTTGCCTTTGTTGATACTCAGACAT  1049
      || |||||||| ||||||| |||||| ||| |||||||||||||||||||
seq2  AC-AGCAAAAC-ATGATTT-GGACTC-TGCTTTTGTTGATACTCAGACAT  1044

seq1  TCCATGTTTTCTGCCACTTGGGACCA-TGTTCTCTTTCTTAGTACCCAGG  1098
      ||||||||||||| ||||||||| || |||||||||   ||||  |||||
seq2  TCCATGTTTTCTG-CACTTGGGAACATTGTTCTCTT--CTAGTTACCAGG  1091

seq1  ACTTCTAGACATTCCTCCCCAAATA-CAAGAAAAATGTAAAGGCAAAGGG  1147
      |||||||||||||||| || ||||| |||| |||||||  |||| | || 
seq2  ACTTCTAGACATTCCT-CCTAAATACCAAGGAAAATGT-CAGGC-AGGGT  1138

seq1  TACTCACTTG  1157
      ||||||||||
seq2  TACTCACTTG  1148

seq1: chr7_109350770_109351857
seq2: B6Ng01-311I18.g_66_1140 (reverse)

seq1  AAAGAATCTACATGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG  50
      |||| |||||||| || ||||| ||||||  ||||| ||||||||| |  
seq2  AAAGGATCTACAT-GGTCTGGT-AGATGGTCCAGTGAGTAAGAGCA-CGA  47

seq1  ACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAACAACCACATGGTGGC  100
      |||||||||||  ||||| |||| ||||||||| ||| | |||||   ||
seq2  ACTGCTCTTCCCGAGGTCAAGAG-TCAAATCCC-ACACCAACATG--TGC  93

seq1  TCAC-AACTATCCATAAGGAGATCTGACTCCCTCTTCTGGAGTGTCTGAA  149
      |||| |||||| ||||| ||||||||||||||   ||| |||||||||||
seq2  TCACAAACTAT-CATAA-GAGATCTGACTCCCCTCTCT-GAGTGTCTGAA  140

seq1  G-ACAGCTACAGTGTACTTACATATAAT-AAATAAATAAATCTAAAAAAA  197
      | |||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  GAACAGCTACAGTGTACTTACATATAATAAAATAAATAAATCTAAGAAAA  190

seq1  AAAAAAAAAAAAAAAAAAAACCTCTGACAAGAGGGTCAGATGTGCAGATA  247
      |||| ||||||||||      ||||||||||| |||||||||||||||||
seq2  AAAAGAAAAAAAAAA------CTCTGACAAGA-GGTCAGATGTGCAGATA  233

seq1  TTAGC-AACCACTGTATCAAAGGAAGTATGACCAAGTAATGAATAATGGT  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACCACTGTATCAAAGGAAGTATGACCAAGTAATGAATAATGGT  283

seq1  GATAGACATATTACAGGAGGATAAACTGTTTCCTTCACGAATAGGCAGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACATATTACAGGAGGATAAACTGTTTCCTTCACGAATAGGCAGCC  333

seq1  AAAATTCAGATTCAATTTGAACTCAGAGATTAACTGCCTCTGCCTCCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGATTCAATTTGAACTCAGAGATTAACTGCCTCTGCCTCCTGA  383

seq1  ATGCTGGGATTAAAGGCATGTGCCAGCATTGCTTGGCAATTTAAAGAATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGATTAAAGGCATGTGCCAGCATTGCTTGGCAATTTAAAGAATC  433

seq1  TTTAGCTAATTAGAAAAAAAGAAAGAAAAGACAGATAAAAAGCAGCTGTC  496
      ||||||||||||||||||||||||||||||||||||||   || ||||||
seq2  TTTAGCTAATTAGAAAAAAAGAAAGAAAAGACAGATAAGGGGCGGCTGTC  483

seq1  TTATGAAATAAAGAGCAGAGGGTATAGTAGAACCCTCCACTTCCAAAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATAAAGAGCAGAGGGTATAGTAGAACCCTCCACTTCCAAAGCA  533

seq1  GCTTTTTAATCAGTATAAAAATCACTGTCCAAGATCAATGTCTTCAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAATCAGTATAAAAATCACTGTCCAAGATCAATGTCTTCAAATT  583

seq1  GTGACCCAAATATCTATAAGTTTAAGATTTATTTTTCAGTTGATCCATAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAAATATCTATAAGTTTAAGATTTATTTTTCAGTTGATCCATAG  633

seq1  AGCCCAAACTACTTTCATAATAAAACTACAATGGCTAGGCCTGGTGTAAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAACTACTTTCATAATAAAACTACAATGGCTAGGCCTGGTGTAAC  683

seq1  CAATCTCACCTTCTAGAGGCTAAGGCAAGATGATCACAAGTTCAAGGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCACCTTCTAGAGGCTAAGGCAAGATGATCACAAGTTCAAGGCCT  733

seq1  ATCTGAACTAGAGAGTTCAAGGCAAGGCTAAGAAACTTACACCCTAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTAGAGAGTTCAAGGCAAGGCTAAGAAACTTACACCCTAATTC  783

seq1  AAAAAGTAAATAGAGAGCTGGGTGGCAGTGGTGGTACAGGCCTTTAATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAATAGAGAGCTGGGTGGCAGTGGTGGTACAGGCCTTTAATCC  833

seq1  CAGCACACAAGGAAGCAGAGGCAGTCAGATCTCCTTTGAATTCAAGGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACAAGGAAGCAGAGGCAGTCAGATCTCCTTTGAATTCAAGGCCA  883

seq1  GCCTGGTTTACAGAGCAAGTTACAGGTCAGCCATGGCTACACATTGAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTTTACAGAGCAAGTTACAGGTCAGCCATGGCTACACATTGAAAC  933

seq1  TCCTGTCTTGGAAAACCAAACTAGCTAAGCATACTCTGACCCTAGGTTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTGGAAAACCAAACTAGCTAAGCATACTCTGACCCTAGGTTCA  983

seq1  ATCTCCAATACAACAACAACAAAAACAAAAAACTAGAACCTAAGCAGCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAATACAACAACAACAAAAACAAAAAACTAGAACCTAAGCAGCAA  1033

seq1  TCAAGGAAACGACCCCAAACTGTATGAACAGTCATTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAACGACCCCAAACTGTATGAACAGTCATTGAATTC  1075