BAC Information

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BAC

Clone NameB6Ng01-311N13
Chromosome7 (Build37)
Map Location 20,819,783 - 20,820,264
singlet/doubletsinglet
Overlap geneLOC100043523
Upstream geneOpa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574
Downstream geneEG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311N13.bB6Ng01-311N13.g
ACCGA103463GA103464
length476409
definitionB6Ng01-311N13.b B6Ng01-311N13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
accaggaaacattatttctttctgaagtctgcaggtaaccttatatagct
taatattttgcttttgtctcaaagacatgtctctgtcctagattagtact
caggagaaaacagcattcagtgtaacatgtatgtgagatgttgaatttta
tctggtggatggaggccctcatgttcctacagaaaacatataaacaagta
aaatgcagactaagcatcagcttgcaaagggtgtaacagtgattgtgtta
gtaactttggagggaagctgcaggtgacacagctaaggctctggcacctg
acattttagaacaaaaattaagatcaggaaaaatatgaatagatgaaacg
tcttagcaagttggatttttttttacatggaggacacatatgtctgtata
tgttcatcagtgtgatcagaagacagctggctttattagaaatatgtggt
gtgtttttgtgtttgtgtgtgtgttc
ctgatctttccaaggcttttatgatgaaggggtgttggatcttgtcaaat
gctttctcagcatctaatgagatgatcatgtggtttttgtctttgagttt
gtttatatagtgggttgtattgatgaatttccatgtattaaaccatccct
gcatccctggaaggaagcctatttggtcttgatggatgattgtttttatg
tgttcttagattcggttagcgagaagtttattgagtaattttgcattgat
attcatgagggaaattggtctgaagttctctttctttgttgagtctttat
gtggtttaggtatcagaataattgtggtttcatagtatgagttgggtaga
gtaatttcaattcgaattttgtggaatttttttgataagagctggaatta
tgtcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20819783_20820264
seq2: B6Ng01-311N13.b_46_527 (reverse)

seq1  GAACACACACACAAACACAAAAACACACCACATATTTCTAATAAAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACACAAACACAAAAACACACCACATATTTCTAATAAAGCCAG  50

seq1  CTGTCTTCTGATCACACTGATGAACATATACAGACATATGTGTCCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTGATCACACTGATGAACATATACAGACATATGTGTCCTCCAT  100

seq1  GTAAAAAAAAATCCAACTTGCTAAGACGTTTCATCTATTCATATTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAATCCAACTTGCTAAGACGTTTCATCTATTCATATTTTTCC  150

seq1  TGATCTTAATTTTTGTTCTAAAATGTCAGGTGCCAGAGCCTTAGCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTAATTTTTGTTCTAAAATGTCAGGTGCCAGAGCCTTAGCTGTGT  200

seq1  CACCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCAGCTTCCCTCCAAAGTTACTAACACAATCACTGTTACACCCTT  250

seq1  TGCAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCTGATGCTTAGTCTGCATTTTACTTGTTTATATGTTTTCTGTAG  300

seq1  GAACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGAGGGCCTCCATCCACCAGATAAAATTCAACATCTCACATACAT  350

seq1  GTTACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTGAATGCTGTTTTCTCCTGAGTACTAATCTAGGACAGAGACAT  400

seq1  GTCTTTGAGACAAAAGCAAAATATTAAGCTATATAAGGTTACCTGCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGACAAAAGCAAAATATTAAGCTATATAAGGTTACCTGCAGAC  450

seq1  TTCAGAAAGAAATAATGTTTCCTGGTGAATTC  482
      ||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGAAATAATGTTTCCTGGTGAATTC  482