BAC Information

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BAC

Clone NameB6Ng01-312B12
Chromosome7 (Build37)
Map Location 116,631,090 - 116,806,701
singlet/doubletdoublet
Overlap geneTrim66, Rpl27a, St5
Upstream geneOlfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik
Downstream geneLOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312B12.bB6Ng01-312B12.g
ACCGA103646GA103647
length1,0451,084
definitionB6Ng01-312B12.b B6Ng01-312B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,631,090 - 116,632,106)(116,805,600 - 116,806,701)
sequence
gaattcagaatatctctcatatcttctccatggtatgaggaaaagcaaat
aaagaatgggacactctgagaaactaccacaaactcttcctctcctggaa
agaattccttgtgatctttttttttttttttttttaaagacacactttca
ttatgtagccctggctggcctggaactcactatgcagccaaggtatgcct
tgagctcacagaggtccacctggctatgcctcccgggtactgggattgaa
ggtgtttacctctgtgcctggcctctcttgtgatcctatcatcaaaatgg
attcttggggatgtggagatggctaagtgggggaaaagcaggggcaaaaa
caagcaaattgttggagctctctggccagctagcctaaccaaactgagtt
agcttcaggttcagtgagaaatcctgtctcaattcataaaatagaggaaa
tctgaggtagatacttcatgtcgacctgtgatcttcacatgtacatacca
cccacacatacatgaatactgcacacatgtgtacacacacacacacacac
acacacacacacacaccccaaggagagattggagatagaggactctgtga
ggagccgccctcacatttgccattacaagatggcgctgacagctgtgttc
taagtggtaaacataatctgcacacgtgcaggggcagttttcccgccatg
tgttctgcctttctcgtgatgacaactgagccgatgggctgcagccaatc
agggagtaatacgtcctaggcggaggataattctccttaaaagggacggg
gttttgccattctttttcttgctttcttgttcttgttctttttcttgctc
ttgctcctcttgcctcttctggctcctgaaagatataaagcaaataaaag
ctttttgccgcaaaaaaattccggttttgttggcgtttcttccctggccg
ggtcgcgaagaacgcgtgtaagaaggactcttccattctttccacccaac
ttgaaattctggtgactaagacctcaggaagcctggcgcagttct
gaattcactctgtagactaggctggcctcgaactcagaaatccgcccacc
tctccttctgcctctgtctcccaagtgctgggattcgaggtacacacttt
catgcccagcgtgatacagttaacatttttatatttggtgagcatgtgtc
agttttattacttattcgaggagtgatttaagttttctgaaaaatagggc
tggactgtccttttgatgtaaaaccacttgctctcaggtgatttcctagc
ctccctgggcagggctaaggtttccagactggcagatagattatctcctt
gaaattagctagtttttttattttcacacttctcccatccctctcctatg
cacagatggccatcaccagatgtaacattgtacccgtcccttctctgtcg
ctctctgggtacacaagctgagggagcactatgtttttgcctttgtgagt
taaacctaggattatgtaatacacatgtgactttgtgtttttgttttata
cagaatctagatcagatgtgtcgatgattagaactttcagtttggaagga
gccttttggaatacaacatcccctctctattagcataagcaactgggagc
acatgtaaactctggagatggtctttaaaaaaaaatcataatcaaagact
tttgcccaagtcttttaaaggctcaaaaagaatgtattttttgtaagatt
cgctgaaagtaccagattagcccaactaagtcctttctataattgtgggg
ctcatttgtttaaactagagcttattacttcagagcaaatacgatgggaa
gtaatgtgcttaaccccatttaacagccaagacgaaagctctctttcatg
ggcctcttctgataaagacccatcgtaacttgactgtgctaagtctgtat
ccctgttagttctctgcaactgctctgagtaggaatactccattttggtg
gcgttgtctgtcttgatgtaagttgagatcttggatgtaatttatctaga
caattcatctaaaaacttgtgaatccgcctctctctccccctatctcctt
tgggagtcagttgggaggagtcactgagtaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116631090_116632106
seq2: B6Ng01-312B12.b_49_1093

seq1  GAATTCAGAATATCTCTCATATCTTCTCCATGGTATGAGGAAAAGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATATCTCTCATATCTTCTCCATGGTATGAGGAAAAGCAAAT  50

seq1  AAAGAATGGGACACTCTGAGAAACTACCACAAACTCTTCCTCTCCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGGACACTCTGAGAAACTACCACAAACTCTTCCTCTCCTGGAA  100

seq1  AGAATTCCTTGTGATCTTTTTTTTTTTTTTTTTTTAAAGACACACTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTTGTGATCTTTTTTTTTTTTTTTTTTTAAAGACACACTTTCA  150

seq1  TTATGTAGCCCTGGCTGGCCTGGAACTCACTATGCAGCCAAGGTATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCCCTGGCTGGCCTGGAACTCACTATGCAGCCAAGGTATGCCT  200

seq1  TGAGCTCACAGAGGTCCACCTGGCTATGCCTCCCGGGTACTGGGATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCACAGAGGTCCACCTGGCTATGCCTCCCGGGTACTGGGATTGAA  250

seq1  GGTGTTTACCTCTGTGCCTGGCCTCTCTTGTGATCCTATCATCAAAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTACCTCTGTGCCTGGCCTCTCTTGTGATCCTATCATCAAAATGG  300

seq1  ATTCTTGGGGATGTGGAGATGGCTAAGTGGGGGAGAAGCAGGGGCAAAGA  350
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  ATTCTTGGGGATGTGGAGATGGCTAAGTGGGGGAAAAGCAGGGGCAAAAA  350

seq1  CAAGCAAATTGTTGGAGCTCTCTGGCCAGCTAGCCTAACCAAACTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAATTGTTGGAGCTCTCTGGCCAGCTAGCCTAACCAAACTGAGTT  400

seq1  AGCTTCAGGTTCAGTGAGAAATCCTGTCTCAATTCATAAGATAGAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  AGCTTCAGGTTCAGTGAGAAATCCTGTCTCAATTCATAAAATAGAGGAAA  450

seq1  TCTGAGGTAGATACTTCATGTCGACCTGTGATCTTCACATGTACATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTAGATACTTCATGTCGACCTGTGATCTTCACATGTACATACCA  500

seq1  CCCACACATACATGAATACTGCACACATGTGTACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACATACATGAATACTGCACACATGTGTACACACACACACACACAC  550

seq1  ACACACACACACACACCCCAAGGAGAGATTGGAGATAGAGGACTCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACCCCAAGGAGAGATTGGAGATAGAGGACTCTGTGA  600

seq1  GGAGCCGCCCTCACATTTGCCATTACAAGATGGCGCTGACAGCTGTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGCCCTCACATTTGCCATTACAAGATGGCGCTGACAGCTGTGTTC  650

seq1  TAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATG  700

seq1  TGTTCTGCCTTTCTCGTGATGACAACTGAGCCGATGGGCTGCAGCCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCCTTTCTCGTGATGACAACTGAGCCGATGGGCTGCAGCCAATC  750

seq1  AGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGG  800

seq1  GTTTTGCCATTCTTTTTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCATTCTTTTTCTTGCTTTCTTGTTCTTGTTCTTTTTCTTGCTC  850

seq1  TTGCT-CTCTTG-CTC-TCTGGCTCCTG-AAGATAT-AAGCAA--TAAAG  893
      ||||| |||||| ||| ||||||||||| ||||||| ||||||   ||||
seq2  TTGCTCCTCTTGCCTCTTCTGGCTCCTGAAAGATATAAAGCAAATAAAAG  900

seq1  C-TTTTGCCGC-AGAAGATTCCGG-TTTGTT-GCG-TTCTT-CCTGGCC-  936
      | ||||||||| | || ||||||| |||||| ||| ||||| ||||||| 
seq2  CTTTTTGCCGCAAAAAAATTCCGGTTTTGTTGGCGTTTCTTCCCTGGCCG  950

seq1  GGTCGCG-AGAACGCGTGTAAG-AGGACTC-TCCA---TCTCCACCCA--  978
      ||||||| |||||||||||||| ||||||| ||||   | ||||||||  
seq2  GGTCGCGAAGAACGCGTGTAAGAAGGACTCTTCCATTCTTTCCACCCAAC  1000

seq1  CTGAA--TCT-GTGACT-AGACCTCAGG-AGCCT-GCGCAGTTCT  1017
       ||||  ||| |||||| |||||||||| ||||| ||||||||||
seq2  TTGAAATTCTGGTGACTAAGACCTCAGGAAGCCTGGCGCAGTTCT  1045

seq1: chr7_116805600_116806701
seq2: B6Ng01-312B12.g_68_1151 (reverse)

seq1  TCCCTACTCCAGTTGACCTCCCTCCCACTTGACCTTCCCCAAAAGGAGAA  50
      |||||||| ||| ||||   |||||||  ||||  ||||  ||||||| |
seq2  TCCCTACT-CAG-TGAC--TCCTCCCAACTGAC--TCCC--AAAGGAG-A  41

seq1  TAGGGGGAAGAGAGAGGCGGATTCACAAGTTTTTAGATTGAAATTTGTCT  100
      ||||||| ||||||||||||||||||||||||||||| ||||  ||||| 
seq2  TAGGGGG-AGAGAGAGGCGGATTCACAAGTTTTTAGA-TGAA--TTGTC-  86

seq1  TAGATAAATTAACATCCAAGATCTCAACTTTACATCAAAGACAGACAAAC  150
      |||||||||| ||||||||||||||||| ||||||| ||||||||| |||
seq2  TAGATAAATT-ACATCCAAGATCTCAAC-TTACATC-AAGACAGAC-AAC  132

seq1  GCCACCAAAATGGAGTATTCCTACTCAGAGCAGTTTGCAGAGAACTAACA  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCACCAAAATGGAGTATTCCTACTCAGAGCAG-TTGCAGAGAACTAACA  181

seq1  GGGATACAGACTTAGCACAGTCAAGTTACGATGGGTCTTTATCAGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAGACTTAGCACAGTCAAGTTACGATGGGTCTTTATCAGAAGAG  231

seq1  GCCCATGAAAGAGAGCTTTCGTCTTGGCTGTTAAATGGGGTTAAGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAAAGAGAGCTTTCGTCTTGGCTGTTAAATGGGGTTAAGCACAT  281

seq1  TACTT-CCATCGTATTTGCTCTGAAGTAATAAGCTCTAGTTTAAACAAAT  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCATCGTATTTGCTCTGAAGTAATAAGCTCTAGTTTAAACAAAT  331

seq1  GAGCCCCACAATTATAGAAAGGACTTAGTTGGGCTAATCTGGTACTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCACAATTATAGAAAGGACTTAGTTGGGCTAATCTGGTACTTTCA  381

seq1  GCGAATCTTACAAAAAATACATTCTTTTTGAGCCTTTAAAAGACTTGGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATCTTACAAAAAATACATTCTTTTTGAGCCTTTAAAAGACTTGGGC  431

seq1  AAAAGTCTTTGATTATGATTTTTTTTTAAAGACCATCTCCAGAGTTTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTTGATTATGATTTTTTTTTAAAGACCATCTCCAGAGTTTACA  481

seq1  TGTGCTCCCAGTTGCTTATGCTAATAGAGAGGGGATGTTGTATTCCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCAGTTGCTTATGCTAATAGAGAGGGGATGTTGTATTCCAAAA  531

seq1  GGCTCCTTCCAAACTGAAAGTTCTAATCATCGACACATCTGATCTAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTCCAAACTGAAAGTTCTAATCATCGACACATCTGATCTAGATT  581

seq1  CTGTATAAAACAAAAACACAAAGTCACATGTGTATTACATAATCCTAGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAAACAAAAACACAAAGTCACATGTGTATTACATAATCCTAGGT  631

seq1  TTAACTCACAAAGGCAAAAACATAGTGCTCCCTCAGCTTGTGTACCCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCACAAAGGCAAAAACATAGTGCTCCCTCAGCTTGTGTACCCAGA  681

seq1  GAGCGACAGAGAAGGGACGGGTACAATGTTACATCTGGTGATGGCCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACAGAGAAGGGACGGGTACAATGTTACATCTGGTGATGGCCATCT  731

seq1  GTGCATAGGAGAGGGATGGGAGAAGTGTGAAAATAAAAAAACTAGCTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGGAGAGGGATGGGAGAAGTGTGAAAATAAAAAAACTAGCTAAT  781

seq1  TTCAAGGAGATAATCTATCTGCCAGTCTGGAAACCTTAGCCCTGCCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAGATAATCTATCTGCCAGTCTGGAAACCTTAGCCCTGCCCAGG  831

seq1  GAGGCTAGGAAATCACCTGAGAGCAAGTGGTTTTACATCAAAAGGACAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGGAAATCACCTGAGAGCAAGTGGTTTTACATCAAAAGGACAGT  881

seq1  CCAGCCCTATTTTTCAGAAAACTTAAATCACTCCTCGAATAAGTAATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTATTTTTCAGAAAACTTAAATCACTCCTCGAATAAGTAATAAA  931

seq1  ACTGACACATGCTCACCAAATATAAAAATGTTAACTGTATCACGCTGGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACATGCTCACCAAATATAAAAATGTTAACTGTATCACGCTGGGC  981

seq1  ATGAAAGTGTGTACCTCGAATCCCAGCACTTGGGAGACAGAGGCAGAAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGTGTACCTCGAATCCCAGCACTTGGGAGACAGAGGCAGAAGG  1031

seq1  AGAGGTGGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGCGGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAA  1081

seq1  TTC  1102
      |||
seq2  TTC  1084