BAC Information

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BAC

Clone NameB6Ng01-313A12
Chromosome7 (Build37)
Map Location 19,527,151 - 19,679,575
singlet/doubletdoublet
Overlap geneNova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk
Upstream geneCeacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik
Downstream geneSix5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313A12.bB6Ng01-313A12.g
ACCGA104351GA104352
length794220
definitionB6Ng01-313A12.b B6Ng01-313A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,527,151 - 19,527,942)(19,679,356 - 19,679,575)
sequence
gaattcctgtgattccagcattgggagatggagacatcctcagctatata
acttgaagctagcatgggctatgtgagagcctgcctcagatagatagata
gatagatagatagatagatagatagatagatagaaagaatataagtcagg
tatggtgatgtacacctttggtcccatcaccagggatattggggcagatg
gttatttgtgatcgagatgagcatcctctatagagtgtgttccagacctg
cagagctacatagtgatactttgttacaaaaggggaaagaaaaagaagtg
aatgaatgaagatggtcttatgctatctttctaactgctgttgccatagt
aacaagccttcctaaagtgggacccctccctcgctcattccctcccaccc
tgtatgccctgcagaggaaggcgagtacttcctgaaggtgctcatcccca
gctacgccgccggctcaatcatcggcaaaggtggccagaccatcgtgcag
ctccagaaggagacaggagccaccatcaagctgtctaagtccaaagactt
ctacccaggtaagcctcagaccggccaggtccctgagctggacttctctc
ttctcctttcctctttcctgagccctgggtgtgaagaaggattgtgttag
ggacagttagagtgatggaggagggctacttttctctccccttaaagagc
ttgagcttgcctgctgcccaaggggcctggcctgagcagatgggggtggg
ggcagggccagacatgaattgcttcatattcatgtaaatcattt
ccggccccgcgggtaggcggtggatctagctgggaggaggggcggggaat
cgcgctagaaagtttgcagcaacttttctggagtgtcggtccaaaaagcg
gatgcgcgtggcttgcgcaggcgcagtgggaagatggtgtgcccgctgct
ggcccaaccccctacttttttccaaacttgagtggcacagctgggtcaca
gctgggggggagggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19527151_19527942
seq2: B6Ng01-313A12.b_49_842

seq1  GAATTCCTGTGATTCCAGCATTGGGAGATGGAGACATCCTCAGCTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGATTCCAGCATTGGGAGATGGAGACATCCTCAGCTATATA  50

seq1  ACTTGAAGCTAGCATGGGCTATGTGAGAGCCTGCCTCAGATAGATAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGCTAGCATGGGCTATGTGAGAGCCTGCCTCAGATAGATAGATA  100

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGAAAGAATATAAGTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGAAAGAATATAAGTCAGG  150

seq1  TATGGTGATGTACACCTTTGGTCCCATCACCAGGGATATTGGGGCAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGATGTACACCTTTGGTCCCATCACCAGGGATATTGGGGCAGATG  200

seq1  GTTATTTGTGATCGAGATGAGCATCCTCTATAGAGTGTGTTCCAGACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGTGATCGAGATGAGCATCCTCTATAGAGTGTGTTCCAGACCTG  250

seq1  CAGAGCTACATAGTGATACTTTGTTACAAAAGGGGAAAGAAAAAGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACATAGTGATACTTTGTTACAAAAGGGGAAAGAAAAAGAAGTG  300

seq1  AATGAATGAAGATGGTCTTATGCTATCTTTCTAACTGCTGTTGCCATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAAGATGGTCTTATGCTATCTTTCTAACTGCTGTTGCCATAGT  350

seq1  AACAAGCCTTCCTAAAGTGGGACCCCTCCCTCGCTCATTCCCTCCCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCTTCCTAAAGTGGGACCCCTCCCTCGCTCATTCCCTCCCACCC  400

seq1  TGTATGCCCTGCAGAGGAAGGCGAGTACTTCCTGAAGGTGCTCATCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCCTGCAGAGGAAGGCGAGTACTTCCTGAAGGTGCTCATCCCCA  450

seq1  GCTACGCCGCCGGCTCAATCATCGGCAAAGGTGGCCAGACCATCGTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGCCGCCGGCTCAATCATCGGCAAAGGTGGCCAGACCATCGTGCAG  500

seq1  CTCCAGAAGGAGACAGGAGCCACCATCAAGCTGTCTAAGTCCAAAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGGAGACAGGAGCCACCATCAAGCTGTCTAAGTCCAAAGACTT  550

seq1  CTACCCAGGTAAGCCTCAGACCGGCCAGGTCCCTGAGCTGGACTTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGGTAAGCCTCAGACCGGCCAGGTCCCTGAGCTGGACTTCTCTC  600

seq1  TTCTCCTTTCCTCTTTCCTGAGCCCTGGGTGTGAAGAAGGATTGTGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTCCTCTTTCCTGAGCCCTGGGTGTGAAGAAGGATTGTGTTAG  650

seq1  GGACAGTTAGAGTGATGGAGGAGGGCTAC-TTTCTCTCCCCTTAAAGAGC  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGACAGTTAGAGTGATGGAGGAGGGCTACTTTTCTCTCCCCTTAAAGAGC  700

seq1  TTGAGC-TGCCTGCTGCCCAAGGGGCCTGGCCTGAGCAGATGGGGGTGGG  748
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTGCCTGCTGCCCAAGGGGCCTGGCCTGAGCAGATGGGGGTGGG  750

seq1  GGCAGGGCCAGACAATGAGCTGCTGCATATTCATG-GAATCATTT  792
      ||||||||||||| ||||  |||| ||||||||||  ||||||||
seq2  GGCAGGGCCAGAC-ATGAATTGCTTCATATTCATGTAAATCATTT  794

seq1: chr7_19679356_19679575
seq2: B6Ng01-313A12.g_75_294 (reverse)

seq1  CCCCCACCCTCCCCCCCAGCTGTGACCCAGCTGTGCCACTCAAGTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCTCCCCCCCAGCTGTGACCCAGCTGTGCCACTCAAGTTTGGA  50

seq1  AAAAAGTAGGGGGTTGGGCCAGCAGCGGGCACACCATCTTCCCACTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGGGGGTTGGGCCAGCAGCGGGCACACCATCTTCCCACTGCGC  100

seq1  CTGCGCAAGCCACGCGCATCCGCTTTTTGGACCGACACTCCAGAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCAAGCCACGCGCATCCGCTTTTTGGACCGACACTCCAGAAAAGTT  150

seq1  GCTGCAAACTTTCTAGCGCGATTCCCCGCCCCTCCTCCCAGCTAGATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAACTTTCTAGCGCGATTCCCCGCCCCTCCTCCCAGCTAGATCCA  200

seq1  CCGCCTACCCGCGGGGCCGG  220
      ||||||||||||||||||||
seq2  CCGCCTACCCGCGGGGCCGG  220