BAC Information

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BAC

Clone NameB6Ng01-313P17
Chromosome7 (Build37)5 (Build37)
Map Location 150,313,371 - 150,313,536135,399,813 - 135,400,912
singlet/doubletsingletsinglet
Overlap geneKcnq1
Upstream geneEG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
Downstream geneCdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P17.bB6Ng01-313P17.g
ACCGA105047GA105048
length7821,107
definitionB6Ng01-313P17.b B6Ng01-313P17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,313,371 - 150,313,536)(135,399,813 - 135,400,912)
sequence
gaattcaataacagaaagggttgcacaaccctgaatacaccaagaaccat
tgaaaaatggattaactatttaaaaattaaaaggggggatggggcaggca
agatggctcagtgggtaaaggtgcttgctgccaaactgaagatctgagtt
tgatatctagaacacacacacacacagtggaaggagagaacaaagtccta
aaagttgtcctctgactgccatgtgtgcttggcacacacacacacacaca
cacacacacacacaagcacacacaaataattaataatataatttaaagtt
ttaccaaaaaggaaatggatgacctttctaatacataaaattatagctcc
ataaaatctaggaacccaccccccggacagatggctcagaggctgaccac
gctggctgctcctctggggaacctagggacaatctcagcgcgcacatggc
agctcacagctgtctgtaacttcagtcctaggggatctgacgccctcttc
cggcttctgggaacactaaggcacacatgtggcgcccaggcatgcacgca
gataaaatgcatacaaatgaagaaaaaatagggacttgtgcacctgattc
tgttttctgggtatcctctcaattgtgggtatgtaggcgagctaacattt
ccacatccattttacagaagggaaaatcgaggctcctaagggtaaagata
ttcagaggggtgctgtgagtgttggtaataaacagctggtgaagccaggt
gtggtggtgcacgccttttaatcccagcactc
gaattcccaacctccagccaggctcagtcaatgatcctgggaagaccatc
ctgaagggtcacaggatatgctgaggtcaacctaggaacaaacagacccc
aaaaagaaagaaggtgcctggcttacagattgttatagaccagtggttct
cttgggtcatgacccctcaggcaaacttctatctccaaaaatatttacat
tatggctcatgaaattagcaaaattatgattatgagatagcaataaaaat
aactgtatggttgggactcaccacaacatgaggagctatcctagagggtc
gaaactttaggaaggttgaggccactgctacagacgctgttggagctggc
ggcatgatacctggctgagtgatgatagtcagtgaggggtgggcagttgc
agaagagcaggggtcctcctagaagcagcaatccacgaagagtgcagtac
caatctttcccttctgcacagagggtatcagctggctggagagttcttgc
atgatgtcatgcattacccaggacacactcaccatcactagcaggccagc
cagcaggcacgctgctcctgcccacatcctgatcttgactttggtgctct
ccttctccacatacttcaaacacttgcttctgaccatgcacagaagcaaa
cccagtctagcggcgatgacacacgtgaccatgaggacctgagacttcta
ccaagattcaggaaggtcctgcaaggagtcgtatgccttgcactgagtct
ggggaatgttgtgtgccacacaggtcttccacaggcccttccagatagtt
gatgctctgatgatataactaccggaaaactctatcacctaccagttggg
taaaagacagctcagtatggtgcacacccagcccttcgtgaccagaaaga
catcccaccgccgcctgccgccatggggaaaccatggcacagtttgcgct
gagcaacagaaagtcctttctgagcttgctgctgctaccagaaagaagtc
ttcagaagactggaacaggacggggtaacaacttgcccacagaactgcct
tctgccaggcagatggattctcagtgtgagtttggaagcagctaatctac
aaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_150313371_150313536
seq2: B6Ng01-313P17.b_149_327 (reverse)

seq1  TTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCAG  50
      |||||||||||||  ||||||||||||||||||||||||||||||  |  
seq2  TTATTTGTGTGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCA  50

seq1  AGGATTGCTGGC--TCACTGGGCAA----------TCAGTTCTCTTCTT-  87
      || |    ||||  |||  || |||          |  ||||||| ||| 
seq2  AGCACACATGGCAGTCAGAGGACAACTTTTAGGACTTTGTTCTCTCCTTC  100

seq1  --CTATCTTAATGTGGGATCTGGGGATCAAACTCAGGTTGTCAGGTTTAC  135
        || | |   |||| | ||| |  ||||||||||| |  |||| ||  |
seq2  CACTGTGTGTGTGTGTGTTCTAGATATCAAACTCAGATCTTCAGTTTGGC  150

seq1  ATGGTGAGCATTTTTACCCACTGAGCCATCT  166
      |  |  ||||  |||||||||||||||||||
seq2  A--GCAAGCACCTTTACCCACTGAGCCATCT  179

seq1: chr5_135399813_135400912
seq2: B6Ng01-313P17.g_68_1174

seq1  GAATTCCCAACCTCCAGCCAGGCTCAGTCAATGATCCTGGGAAGACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACCTCCAGCCAGGCTCAGTCAATGATCCTGGGAAGACCATC  50

seq1  CTGAAGGGTCACAGGATATGCTGAGGTCAACCTAGGAACAAACAGACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGTCACAGGATATGCTGAGGTCAACCTAGGAACAAACAGACCCC  100

seq1  AAAAAGAAAGAAGGTGCCTGGCTTACAGATTGTTATAGACCAGTGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAGGTGCCTGGCTTACAGATTGTTATAGACCAGTGGTTCT  150

seq1  CTTGGGTCATGACCCCTCAGGCAAACTTCTATCTCCAAAAATATTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCATGACCCCTCAGGCAAACTTCTATCTCCAAAAATATTTACAT  200

seq1  TATGGCTCATGAAATTAGCAAAATTATGATTATGAGATAGCAATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCATGAAATTAGCAAAATTATGATTATGAGATAGCAATAAAAAT  250

seq1  AACTGTATGGTTGGGACTCACCACAACATGAGGAGCTATCCTAGAGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATGGTTGGGACTCACCACAACATGAGGAGCTATCCTAGAGGGTC  300

seq1  GAAACTTTAGGAAGGTTGAGGCCACTGCTACAGACGCTGTTGGAGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTAGGAAGGTTGAGGCCACTGCTACAGACGCTGTTGGAGCTGGC  350

seq1  GGCATGATACCTGGCTGAGTGATGATAGTCAGTGAGGGGTGGGCAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATACCTGGCTGAGTGATGATAGTCAGTGAGGGGTGGGCAGTTGC  400

seq1  AGAAGAGCAGGGGTCCTCCTAGAAGCAGCAATCCACGAAGAGTGCAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCAGGGGTCCTCCTAGAAGCAGCAATCCACGAAGAGTGCAGTAC  450

seq1  CAATCTTTCCCTTCTGCACAGAGGGTATCAGCTGGCTGGAGAGTTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTCCCTTCTGCACAGAGGGTATCAGCTGGCTGGAGAGTTCTTGC  500

seq1  ATGATGTCATGCATTACCCAGGACACACTCACCATCACTAGCAGGCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATGCATTACCCAGGACACACTCACCATCACTAGCAGGCCAGC  550

seq1  CAGCAGGCACGCTGCTCCTGCCCACATCCTGATCTTGACTTTGGTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCACGCTGCTCCTGCCCACATCCTGATCTTGACTTTGGTGCTCT  600

seq1  CCTTCTCCACATACTTCAAACACTTGCTTCTGACCATGCACAGAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCACATACTTCAAACACTTGCTTCTGACCATGCACAGAAGCAAA  650

seq1  CCCAGTCTAGCGGCGATGACACACGTGACCATGAGGACCTGAGACTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTAGCGGCGATGACACACGTGACCATGAGGACCTGAGACTTCTA  700

seq1  CCAAGATTCAGGAAGGTCCTGCAAGGAGTCGTATGCCTTGCACTGAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTCAGGAAGGTCCTGCAAGGAGTCGTATGCCTTGCACTGAGTCT  750

seq1  GGGGAATGTTGTGTGCCACACAGGTCTTCCACAGGCCCTTCCAGATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGTTGTGTGCCACACAGGTCTTCCACAGGCCCTTCCAGATAGTT  800

seq1  GATGCTCTGATGATATAACTACCGGAAAACTCTATCACCTACCAGTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTGATGATATAACTACCGGAAAACTCTATCACCTACCAGTTGGG  850

seq1  TAAAAGACAGCTCAGTATGGTGCACACCCAGCCCTTCGTGACCAGAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACAGCTCAGTATGGTGCACACCCAGCCCTTCGTGACCAGAAAGA  900

seq1  CAT-CCACCGCCGCCTGCCGCCATTGGGAAACCATGGCACAGTTTGCGCT  949
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATCCCACCGCCGCCTGCCGCCATGGGGAAACCATGGCACAGTTTGCGCT  950

seq1  GAGCAACAG-AAGTCC-TTCTGAGC-TGCTGCTGCCACCAGGAAG-AGTC  995
      ||||||||| |||||| |||||||| ||||||||| ||||| ||| ||||
seq2  GAGCAACAGAAAGTCCTTTCTGAGCTTGCTGCTGCTACCAGAAAGAAGTC  1000

seq1  TCCAG-AGACTGGAACA-GACAGGGTAACAAACTTGCCCACAGAACTGCC  1043
      | ||| ||||||||||| ||| ||||||| ||||||||||||||||||||
seq2  TTCAGAAGACTGGAACAGGACGGGGTAAC-AACTTGCCCACAGAACTGCC  1049

seq1  TTCCTGCCAGGCAGATGGA-TCTCA--GTGAGTTTGAAGCCAGCCTAATC  1090
      || |||||||||||||||| |||||  ||||||||| |  ||| ||||||
seq2  TT-CTGCCAGGCAGATGGATTCTCAGTGTGAGTTTGGAAGCAG-CTAATC  1097

seq1  TACAAAGTTT  1100
      ||||||||||
seq2  TACAAAGTTT  1107