BAC Information

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BAC

Clone NameB6Ng01-314C10
Chromosome7 (Build37)
Map Location 122,892,616 - 122,893,767
singlet/doubletsinglet
Overlap geneSox6
Upstream geneInsc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314C10.bB6Ng01-314C10.g
ACCGA105171GA105172
length1,1801,162
definitionB6Ng01-314C10.b B6Ng01-314C10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagttgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatgggccccc
aatgaaaggagctagagaaagtaccaagaagctaaagggatctgcaaccc
tataggtgacacattatgaactaacccagtatcccggagctctgactcta
gctgcatatgcatcaaagatgacctagtcggtcattcactgggaaagaga
ggccaatttggaacacgccaactttatatgctcagtacagggtacgccaa
ggtcattaaaagggaaattgcgtgatgcgt
gaattctcttgccatatgctcctaaagtatttgttacactctaaggctat
agtagagtctttgtactgatatttgtcaaaaataatgaaaacggtttgtg
ctctaaaactgtacaatttatcaaatagcatatgtagccaatttaaataa
gtctcatcgaagtttcagtcttgatttgaaaaaatagcataggatgaatt
tatttataagaaccttaatagtttctctcaattccttttacattttagat
taccttataattttctaaatctacatgaacaataatgatcaattttgtca
gcattattcacaccttttattaatttaacatagatgaataaatgtgagtg
ttgtgaagagttgattgggaatagattttaaatctgacagttagattaca
gggtacctaagaaaaaatggctctttcactaggtacctagtaatttaatt
cttgtttgaaattattataatttattacagtgtgtgggtcctaatgaatg
tctactattaaatgaaaaggagaaattgaaattaagattatgaaattctt
ttaactcatatctttaaatcctcttaaacaattccaaagacattaataag
ctatgtaggtttctttccatatgctacaatgacagatagaaacatttttt
caacatttaaatattctaggaaatgttgagtgccctacaactctacgctt
gcaatcttgggattttagaaaatgggaaaagccattacaagaacattgaa
cttggcaactctatttagatctttattcggacttgactgagacttttcta
gcatttgtgttttgcagaaatgactatttcctacttttaaacctttaatg
taaggcaatttgagctttcatggagttatagacagcaccacattaatgtt
taaaaaataccaagtactaaggaggctcctaaaactgtgaattagtaaaa
tccacacacacagtgaggatgagtgacgctgggcggacagtgaagctgct
gtaccccggattattggcagagcaaactgggtccaaaaatgatcagatat
tataaataataagtttctggaagaaaaactagcactatcatagcatttgt
tatatcctggaacatactggcaaactgaactgctttggaaaaggccaact
tggggtattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122892616_122893767
seq2: B6Ng01-314C10.g_64_1225 (reverse)

seq1  AAAAATACCC--AG-TGGGCTTTTC--AAGCAG-TCA-TTTGGCAGTATG  43
      ||||||||||  || ||| ||||||  |||||| ||| |||| |||||||
seq2  AAAAATACCCCAAGTTGGCCTTTTCCAAAGCAGTTCAGTTTGCCAGTATG  50

seq1  T--CAGGATATAACAATGGCCTATGATAGTGCTAGTTTTTCT--CAGAAA  89
      |  |||||||||||||  | ||||||||||||||||||||||  ||||||
seq2  TTCCAGGATATAACAAATG-CTATGATAGTGCTAGTTTTTCTTCCAGAAA  99

seq1  -TTATTATTTATAAATATCTGATCATTTTTGGGACCAGTTTGGCTCTGCC  138
       ||||||||||| |||||||||||||||||||  ||||||| ||||||||
seq2  CTTATTATTTAT-AATATCTGATCATTTTTGGACCCAGTTT-GCTCTGCC  147

seq1  AATA--TCGGGGTACAGCAGCCTTCACTGTCCG-CCAGCGTTCACTCATC  185
      ||||   ||||||||||||| |||||||||||| |||||| |||||||||
seq2  AATAATCCGGGGTACAGCAG-CTTCACTGTCCGCCCAGCG-TCACTCATC  195

seq1  CTCACTGTGTGTGTGGATTTTACTAATTCACAGTTTTAGGAGCCTCCTTA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGTGTGTGGATTTTACTAATTCACAGTTTTAGGAGCCTCCTTA  245

seq1  GTACTTGGTATTTTTTAAACATTAATGTGGTGCTGTCTATAACTCCATGA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGTATTTTTTAAACATTAATGTGGTGCTGTCTATAACTCCATGA  295

seq1  AAGCTCAAATTGCCTTACATTAAAGGTTTAAAAGTAGGAAATAGTCATTT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAATTGCCTTACATTAAAGGTTTAAAAGTAGGAAATAGTCATTT  345

seq1  CTGCAAAACACAAATGCTAGAAAAGTCTCAGTCAAGTCCGAATAAAGATC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAACACAAATGCTAGAAAAGTCTCAGTCAAGTCCGAATAAAGATC  395

seq1  TAAATAGAGTTGCCAAGTTCAATGTTCTTGTAATGGCTTTTCCCATTTTC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAGTTGCCAAGTTCAATGTTCTTGTAATGGCTTTTCCCATTTTC  445

seq1  TAAAATCCCAAGATTGCAAGCGTAGAGTTGTAGGGCACTCAACATTTCCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCAAGATTGCAAGCGTAGAGTTGTAGGGCACTCAACATTTCCT  495

seq1  AGAATATTTAAATGTTGAAAAAATGTTTCTATCTGTCATTGTAGCATATG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTAAATGTTGAAAAAATGTTTCTATCTGTCATTGTAGCATATG  545

seq1  GAAAGAAACCTACATAGCTTATTAATGTCTTTGGAATTGTTTAAGAGGAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACCTACATAGCTTATTAATGTCTTTGGAATTGTTTAAGAGGAT  595

seq1  TTAAAGATATGAGTTAAAAGAATTTCATAATCTTAATTTCAATTTCTCCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATATGAGTTAAAAGAATTTCATAATCTTAATTTCAATTTCTCCT  645

seq1  TTTCATTTAATAGTAGACATTCATTAGGACCCACACACTGTAATAAATTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAATAGTAGACATTCATTAGGACCCACACACTGTAATAAATTA  695

seq1  TAATAATTTCAAACAAGAATTAAATTACTAGGTACCTAGTGAAAGAGCCA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTCAAACAAGAATTAAATTACTAGGTACCTAGTGAAAGAGCCA  745

seq1  TTTTTTCTTAGGTACCCTGTAATCTAACTGTCAGATTTAAAATCTATTCC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTAGGTACCCTGTAATCTAACTGTCAGATTTAAAATCTATTCC  795

seq1  CAATCAACTCTTCACAACACTCACATTTATTCATCTATGTTAAATTAATA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACTCTTCACAACACTCACATTTATTCATCTATGTTAAATTAATA  845

seq1  AAAGGTGTGAATAATGCTGACAAAATTGATCATTATTGTTCATGTAGATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGAATAATGCTGACAAAATTGATCATTATTGTTCATGTAGATT  895

seq1  TAGAAAATTATAAGGTAATCTAAAATGTAAAAGGAATTGAGAGAAACTAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTATAAGGTAATCTAAAATGTAAAAGGAATTGAGAGAAACTAT  945

seq1  TAAGGTTCTTATAAATAAATTCATCCTATGCTATTTTTTCAAATCAAGAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCTTATAAATAAATTCATCCTATGCTATTTTTTCAAATCAAGAC  995

seq1  TGAAACTTCGATGAGACTTATTTAAATTGGCTACATATGCTATTTGATAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCGATGAGACTTATTTAAATTGGCTACATATGCTATTTGATAA  1045

seq1  ATTGTACAGTTTTAGAGCACAAACCGTTTTCATTATTTTTGACAAATATC  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGTTTTAGAGCACAAACCGTTTTCATTATTTTTGACAAATATC  1095

seq1  AGTACAAAGACTCTACTATAGCCTTAGAGTGTAACAAATACTTTAGGAGC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAGACTCTACTATAGCCTTAGAGTGTAACAAATACTTTAGGAGC  1145

seq1  ATATGGCAAGAGAATTC  1152
      |||||||||||||||||
seq2  ATATGGCAAGAGAATTC  1162