BAC Information

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BAC

Clone NameB6Ng01-314D17
Chromosome7 (Build37)
Map Location 11,188,858 - 11,295,540
singlet/doubletdoublet
Overlap geneV1rl1, EG628596, Nlrp4b
Upstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9
Downstream geneLOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314D17.bB6Ng01-314D17.g
ACCGA105228GA105229
length960821
definitionB6Ng01-314D17.b B6Ng01-314D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,294,931 - 11,295,540)(11,188,858 - 11,189,676)
sequence
gaattctatcttgtttagctctttccagtaccatataaagccaaaatctg
aaaacagagatgccattttgtctaaacgaagatcgacttgtcttcagaga
gaatggatctgtggaaaaattaggcaagcagcttagtaacaaaagaagag
ggatggtgcaaagagctggggaattgattaaactggtaaagcgtttgctg
cataagtttaaggacataagttgaaacctcagcattcatgtaagatgcag
ggagtgcagccacacaatttttaacctacaacatgttctacctgcaagat
gtgctggggtaagggtgaggcagaacttttgatcaccagtgactggtaca
acttgaggcccataccataaggaggcacccatgcctgccactgtgttgat
agccaggaactagtatctggtcatcagtaagattaaggatagaaccaaac
acaatgggagggagagagacggggggggatgatttcaaatgatttttatg
ctattcttagagattggtgcctgtgccaatggtcttcagaggcatcatca
agccactgaaaggaacagatgcagaggccaaacaataggtcaagcctggg
tgaacccactaaagaggggaagaaggagtgtagaagccacagggttgaat
gacaccatgagaacacatcccacagaatcagctaaacagggctcacagag
gcttagagactggcaggacaaccatggaccctgcatggaatgtgcactag
gtcctctgcttatatgttttggttgtgtaaatttgtgttcttgtggggtc
cctaaaagtgggagcagtggttgtatttcactttttttgcttaaacttgg
tacaattttcctcctgtggcattgcctcatcctaccttgatatgagggat
ttttcctagtcttattgtaatttgatatgctgctttcagttgctatctct
gagagccctc
gaattctgatgggcattctaataactaatatcaatgctacttaaatcagg
ggagaggagaagaaaagtaaagacatcgttacattcttttcatgaaacca
ggagtacccagatattacaatctggaaaatatacaacaagaagaaaatcg
cacaccaaacacccttcagaatacagatgtaaaagttctccataaattac
tatcaagccaaactcaagacgatctcagaagaagttttgatttacaatgg
ttttatacaaagtacaaaatataagtctgttttttaaatttattttttat
ttttttggcaaagaccctaagagaattcctttttttttttcctgtcaaat
gatcgtggtaactgctgctaaatgttcatagcaacccataaggatttctg
tgcaacaactataaatagtgtagtgtagaaattatgacctagaagttttc
ttatacttgtgcagggggaagcagttgtgatttgacaagggttcccagaa
gcacaagttcagagccacatttttctgcttctttgcagtaagagtttagg
aaattcaaggcatctatgaatcacagggctcccaatggaggagctagaga
aagtacccaaggagctaaagggatctgcaaccctataggtggaacaacat
tatgaactaaccagtaccccggagctcttgactctagctgcatatgtatc
aaaagatggcctagtcggccatcactggaaagagaggcccattggacacg
caaaatttatatgtcccagtacaggggaacgccagggccaaaaaggggga
gtgggtgggtaagggggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11294931_11295540
seq2: B6Ng01-314D17.b_46_655 (reverse)

seq1  AGTGGGTTCACCCAGGCTTGACCTATTGTTTGGCCTCTGCATCTGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTCACCCAGGCTTGACCTATTGTTTGGCCTCTGCATCTGTTCCT  50

seq1  TTCAGTGGCTTGATGATGCCTCTGAAGACCATTGGCACAGGCACCAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCTTGATGATGCCTCTGAAGACCATTGGCACAGGCACCAATCT  100

seq1  CTAAGAATAGCATAAAAATCATTTGAAATCATCCCCCCCCGTCTCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATAGCATAAAAATCATTTGAAATCATCCCCCCCCGTCTCTCTCC  150

seq1  CTCCCATTGTGTTTGGTTCTATCCTTAATCTTACTGATGACCAGATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGTGTTTGGTTCTATCCTTAATCTTACTGATGACCAGATACTA  200

seq1  GTTCCTGGCTATCAACACAGTGGCAGGCATGGGTGCCTCCTTATGGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGCTATCAACACAGTGGCAGGCATGGGTGCCTCCTTATGGTATG  250

seq1  GGCCTCAAGTTGTACCAGTCACTGGTGATCAAAAGTTCTGCCTCACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAGTTGTACCAGTCACTGGTGATCAAAAGTTCTGCCTCACCCTT  300

seq1  ACCCCAGCACATCTTGCAGGTAGAACATGTTGTAGGTTAAAAATTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCACATCTTGCAGGTAGAACATGTTGTAGGTTAAAAATTGTGTG  350

seq1  GCTGCACTCCCTGCATCTTACATGAATGCTGAGGTTTCAACTTATGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTCCCTGCATCTTACATGAATGCTGAGGTTTCAACTTATGTCCT  400

seq1  TAAACTTATGCAGCAAACGCTTTACCAGTTTAATCAATTCCCCAGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTATGCAGCAAACGCTTTACCAGTTTAATCAATTCCCCAGCTCTT  450

seq1  TGCACCATCCCTCTTCTTTTGTTACTAAGCTGCTTGCCTAATTTTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCATCCCTCTTCTTTTGTTACTAAGCTGCTTGCCTAATTTTTCCAC  500

seq1  AGATCCATTCTCTCTGAAGACAAGTCGATCTTCGTTTAGACAAAATGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATTCTCTCTGAAGACAAGTCGATCTTCGTTTAGACAAAATGGCA  550

seq1  TCTCTGTTTTCAGATTTTGGCTTTATATGGTACTGGAAAGAGCTAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTTCAGATTTTGGCTTTATATGGTACTGGAAAGAGCTAAACAA  600

seq1  GATAGAATTC  610
      ||||||||||
seq2  GATAGAATTC  610

seq1: chr7_11188858_11189676
seq2: B6Ng01-314D17.g_66_886

seq1  GAATTCTGATGGGCATTCTAATAACTAATATCAATGCTACTTAAATCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGGGCATTCTAATAACTAATATCAATGCTACTTAAATCAGG  50

seq1  GGAGAGGAGAAGAAAAGTAAAGACATCGTTACATTCTTTTCATGAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGAAGAAAAGTAAAGACATCGTTACATTCTTTTCATGAAACCA  100

seq1  GGAGTACCCAGATATTACAATCTGGAAAATATACAACAAGAAGAAAATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACCCAGATATTACAATCTGGAAAATATACAACAAGAAGAAAATCG  150

seq1  CACACCAAACACCCTTCAGAATACAGATGTAAAAGTTCTCCATAAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAACACCCTTCAGAATACAGATGTAAAAGTTCTCCATAAATTAC  200

seq1  TATCAAGCCAAACTCAAGACGATCTCAGAAGAAGTTTTGATTTACAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGCCAAACTCAAGACGATCTCAGAAGAAGTTTTGATTTACAATGG  250

seq1  TTTTATACAAAGTACAAAATATAAGTCTGTTTTTTAAATTTATTTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACAAAGTACAAAATATAAGTCTGTTTTTTAAATTTATTTTTTAT  300

seq1  TTTTTTGGCAAAGACCCTAAGAGAATTCCTTTTTTTTTTTCCTGTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCAAAGACCCTAAGAGAATTCCTTTTTTTTTTTCCTGTCAAAT  350

seq1  GATCGTGGTAACTGCTGCTAAATGTTCATAGCAACCCATAAGGATTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTGGTAACTGCTGCTAAATGTTCATAGCAACCCATAAGGATTTCTG  400

seq1  TGCAACAACTATAAATAGTGTAGTGTAGAAATTATGACCTAGAAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACTATAAATAGTGTAGTGTAGAAATTATGACCTAGAAGTTTTC  450

seq1  TTATACTTGTGCAGGGGGAAGCAGTTGTGATTTGACAAGGGTTCCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTGTGCAGGGGGAAGCAGTTGTGATTTGACAAGGGTTCCCAGAA  500

seq1  GCACAAGTTCAGAGCCACATTTTTCTGCTTCTTTGCAGTAAGAGTTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTTCAGAGCCACATTTTTCTGCTTCTTTGCAGTAAGAGTTTAGG  550

seq1  AAATTCAAGGCATCTATGAATCACAGGGCTCCCAATGGAGGAGCTAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGGCATCTATGAATCACAGGGCTCCCAATGGAGGAGCTAGAGA  600

seq1  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAT  650

seq1  TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATC  700

seq1  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  750

seq1  CAAAATTTATATGTCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTATATGTCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGA  800

seq1  GTGGGTGGGTA--GGGGAGTG  819
      |||||||||||  ||||||||
seq2  GTGGGTGGGTAAGGGGGAGTG  821