BAC Information

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BAC

Clone NameB6Ng01-316C21
Chromosome7 (Build37)
Map Location 96,158,070 - 96,302,140
singlet/doubletdoublet
Overlap geneTmem135
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneLOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316C21.bB6Ng01-316C21.g
ACCGA106639GA106640
length1,1051,182
definitionB6Ng01-316C21.b B6Ng01-316C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,158,070 - 96,159,170)(96,300,974 - 96,302,140)
sequence
gaattctagtaagaaaagacaagtcttccagaaaggctgcaatcttatta
attaaaaaatgtgaaagagtatattgtgtgtactttccagtaaacacaat
gtcatatttcaaaacgaagacttgtggttatcaatgaaaacaacctcatc
tcatccttccctatattagtacttataaatattgttgacattacaggata
cctgggaaggctagaagagacactcacagaaatcatctcatgtgaccctc
atatcaggggactaggaaactaagatcaacatcttctccaaactcatatg
gctgattaacaagggagtcgggccattagtcctcagtctgtcctgtcttc
tgtccactctcttgctgatgtccctcaaagggatgtataccattatccac
tacagaaaaaaacaagtatcctggacagtactggatcctcagctccttcc
ctaccttctcataaactccttactttagtcctcttcattttaccaatatt
ttttatcacttctcggttgtcatgttccagggatgaggctttagcaaaag
caggagtgtaatgtgtctacatggagagaacaccatgaaacttcctactt
tagaaggaattaaatctatgattgacctttttgatcttgaaacaaatttc
aaagccccactcactatatattttataccaacaactctatgtacaacatt
gtactttcaaaggacataggaaaattccatggtttgcctgcttgtgagta
atatattagcaacagagtcattaaaaactgaaaatacttacattatttct
tcttgtttgacttttctctgccttgtctaaatatgcaaggcttaatagaa
acaaagtcttctacatcatgaaacttacttgagagtgagactggagaaga
tcgattttgtgtaagtcactggagtctgcatagcattagcatcatatctg
acatataggagacattgagtgtgtgtacagttgatatttacagaatgtgt
aaagcttagatactctgaaaatgttaatctctggtttgaagaaatattaa
attaatgatattgcagcataagaaaaagaaaatggataagaatttaaata
gtgag
gaattcaggagggaaaagtttgtttagaattttacttaatatgtttgact
ttatacccatattgcatttatttatatattttttcagagacgtattttct
ttagttttcagtacatagacattcgaacaaaatgtgtatttcctaagtaa
aatctaataatattccaattttttaaaaacgcattacagtttggttcctc
agtttagaatccttttgcactttctagcagttgataagatttggctaaca
ctgtaacggtcttctcttgtgagcgacccgccatgagtgctgggctgttg
ccttttgtccactcagtttctgtcgtgctgtctaaagcggtggatcctca
tcacctattctgccgctgcttgtagtacgtgctacatatttctacatata
tcttgatatgtcggcaagcccctcaacacatgtatagagatcttccttga
cacggaacattgcaatgttgactcaccgcctactgtttagtggagacact
aatgtgttactcattacactgaagtgttttgctgtctgaattttagtttg
tgtatttaaattcagattctaggtgataaattgttcagttatgaatatga
cttaatttttgaattccccttattttcgtctttaaaactgggtttcttgc
agagtatatataattggttccctcccaccctgagataagatctgatgtgg
ccagcaatcgccctgcatcagcctcccgagattgggattgtgcatgtgaa
ccgccatgatttactggtggtgtctacactctatgtgtcagctgtgtaca
gtgtggtctatctaaggtctctgcagttctcattagttattttctattcc
gtcgtcttccttgttactcccttccatatttggttcattatttttattgg
tttcatattattggtcctgctgacttaatctttaatatttgttgttgtaa
cttagtgattcttagcatttcagaatatttgtttttttttattttatcat
cctcaacattaatagtatatcactttatgttacaatggtgaaaatataca
ctgtggccactgaattcctttagccctttgggttgggtatataaccttaa
aaggctttaattctacagaccactatgatttatatatttgccttatgctc
atcattgatcttttagaaaacccgaagagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_96158070_96159170
seq2: B6Ng01-316C21.b_49_1153

seq1  GAATTCTAGTAAGAAAAGACAAGTCTTCCAGAAAGGCTGCAATCTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTAAGAAAAGACAAGTCTTCCAGAAAGGCTGCAATCTTATTA  50

seq1  ATTAAAAAATGTGAAAGAGTATATTGTGTGTACTTTCCAGTAAACACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATGTGAAAGAGTATATTGTGTGTACTTTCCAGTAAACACAAT  100

seq1  GTCATATTTCAAAACGAAGACTTGTGGTTATCAATGAAAACAACCTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTCAAAACGAAGACTTGTGGTTATCAATGAAAACAACCTCATC  150

seq1  TCATCCTTCCCTATATTAGTACTTATAAATATTGTTGACATTACAGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTCCCTATATTAGTACTTATAAATATTGTTGACATTACAGGATA  200

seq1  CCTGGGAAGGCTAGAAGAGACACTCACAGAAATCATCTCATGTGACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGGCTAGAAGAGACACTCACAGAAATCATCTCATGTGACCCTC  250

seq1  ATATCAGGGGACTAGGAAACTAAGATCAACATCTTCTCCAAACTCATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGGGACTAGGAAACTAAGATCAACATCTTCTCCAAACTCATATG  300

seq1  GCTGATTAACAAGGGAGTCGGGCCATTAGTCCTCAGTCTGTCCTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTAACAAGGGAGTCGGGCCATTAGTCCTCAGTCTGTCCTGTCTTC  350

seq1  TGTCCACTCTCTTGCTGATGTCCCTCAAAGGGATGTATACCATTATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTCTCTTGCTGATGTCCCTCAAAGGGATGTATACCATTATCCAC  400

seq1  TACAGAAAAAAACAAGTATCCTGGACAGTACTGGATCCTCAGCTCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAAAACAAGTATCCTGGACAGTACTGGATCCTCAGCTCCTTCC  450

seq1  CTACCTTCTCATAAACTCCTTACTTTAGTCCTCTTCATTTTACCAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCTCATAAACTCCTTACTTTAGTCCTCTTCATTTTACCAATATT  500

seq1  TTTTATCACTTCTCGGTTGTCATGTTCCAGGGATGAGGCTTTAGCAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACTTCTCGGTTGTCATGTTCCAGGGATGAGGCTTTAGCAAAAG  550

seq1  CAGGAGTGTAATGTGTCTACATGGAGAGAACACCATGAAACTTCCTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGTAATGTGTCTACATGGAGAGAACACCATGAAACTTCCTACTT  600

seq1  TAGAAGGAATTAAATCTATGATTGACCTTTTTGATCTTGAAACAAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAATTAAATCTATGATTGACCTTTTTGATCTTGAAACAAATTTC  650

seq1  AAAGCCCCACTCACTATATATTTTATACCAACAACTCTATGTACAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCACTCACTATATATTTTATACCAACAACTCTATGTACAACATT  700

seq1  GTACTTTCAAAGGACATAGGAAAATTCCATGGTTTGCCTGCTTGTGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCAAAGGACATAGGAAAATTCCATGGTTTGCCTGCTTGTGAGTA  750

seq1  ATATATTAGCAACAGAGTCATTAAAAACTGAAAATACTTACATTATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAGCAACAGAGTCATTAAAAACTGAAAATACTTACATTATTTCT  800

seq1  TCTTGTTTGACTTTTCTCTGCCTTGTCTAAATATGCAAGGCTTAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGACTTTTCTCTGCCTTGTCTAAATATGCAAGGCTTAATAGAA  850

seq1  ACAAAGTCTTCTACATCATGAAACTTACTTGAGAGTGAGACTGGAGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCTTCTACATCATGAAACTTACTTGAGAGTGAGACTGGAGAAGA  900

seq1  TCGATTTTGTGTAAGTCACTGGAGTCTGCATAGCATTAGCATCATATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTTTGTGTAAGTCACTGGAGTCTGCATAGCATTAGCATCATATCTG  950

seq1  ACATATAGGAGACATTGAGTGTGTGTACAGTTGATA-TTACAGAATGTGT  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATATAGGAGACATTGAGTGTGTGTACAGTTGATATTTACAGAATGTGT  1000

seq1  AAAGCTTAGATACTCTGAAAATGTTAAATCTCTGTTTTGAAAGAAATATA  1049
      ||||||||||||||||||||||||| |||||||| |||| ||||||||| 
seq2  AAAGCTTAGATACTCTGAAAATGTT-AATCTCTGGTTTG-AAGAAATATT  1048

seq1  AATTAAATGATA-TGCAGCATA--GAAAAGAAAATGGATAAGA--TTAAA  1094
      || | ||||||| |||||||||   ||||||||||||||||||  |||||
seq2  AAATTAATGATATTGCAGCATAAGAAAAAGAAAATGGATAAGAATTTAAA  1098

seq1  TAGTGAG  1101
      |||||||
seq2  TAGTGAG  1105

seq1: chr7_96300974_96302140
seq2: B6Ng01-316C21.g_69_1250 (reverse)

seq1  ACTCTCT---GGTTTTCT-AAAGAACAA-GATGACTATAAAGCAAA-ATA  44
      |||||||   |||||||| ||||| ||| |||||  |||| ||||| |||
seq2  ACTCTCTTCGGGTTTTCTAAAAGATCAATGATGAGCATAAGGCAAATATA  50

seq1  TAAACTAT-GTG--CTGTAGAATTTTAAGCTTTTAAAGATTA-ATACACA  90
      ||||  || |||  |||||||| || |||| ||| ||| ||| |||| ||
seq2  TAAATCATAGTGGTCTGTAGAA-TTAAAGCCTTTTAAGGTTATATACCCA  99

seq1  ACACAAA-GGCTAAAAAGGAATTCAGTG--CACAGTGTAATATTTTCA-C  136
      || |||| ||||  ||||||||||||||  |||||||| ||||||||| |
seq2  ACCCAAAGGGCT--AAAGGAATTCAGTGGCCACAGTGT-ATATTTTCACC  146

seq1  ATTGT-ACATAAAGTGATAATACTATTTAATGTTGA-GATGATAAA--TA  182
      ||||| |||||||||||| |||||| |||||||||| |||||||||   |
seq2  ATTGTAACATAAAGTGAT-ATACTA-TTAATGTTGAGGATGATAAAATAA  194

seq1  AAAAAAACAAATATTCTG-AATGCTAAG-ATCACTAAGTTACAACAACAA  230
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  AAAAAAACAAATATTCTGAAATGCTAAGAATCACTAAGTTACAACAACAA  244

seq1  ATATTAAAGA-TAAGTCAGCAGGAACAATAATATGAAACCAATAAAAATA  279
      |||||||||| ||||||||||||| |||||||||||||||||||||||| 
seq2  ATATTAAAGATTAAGTCAGCAGGACCAATAATATGAAACCAATAAAAAT-  293

seq1  AATGAACCAAATATGG-AGGGAGTAACAAGGAAGACGACGGAATAGAAAA  328
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGAACCAAATATGGAAGGGAGTAACAAGGAAGACGACGGAATAGAAAA  343

seq1  TAACTAATGAGAACTGCAGAGACCTTAGATAGACCACACTGTACACAGCT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATGAGAACTGCAGAGACCTTAGATAGACCACACTGTACACAGCT  393

seq1  GACACATAGAGTGTAGACACCACCAGTAAATCATGGCGGTTCACATGCAC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAGAGTGTAGACACCACCAGTAAATCATGGCGGTTCACATGCAC  443

seq1  AATCCCAATCTCGGGAGGCTGATGCAGGGCGATTGCTGGCCACATCAGAT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAATCTCGGGAGGCTGATGCAGGGCGATTGCTGGCCACATCAGAT  493

seq1  CTTATCTCAGGGTGGGAGGGAACCAATTATATATACTCTGCAAGAAACCC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCAGGGTGGGAGGGAACCAATTATATATACTCTGCAAGAAACCC  543

seq1  AGTTTTAAAGACGAAAATAAGGGGAATTCAAAAATTAAGTCATATTCATA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAGACGAAAATAAGGGGAATTCAAAAATTAAGTCATATTCATA  593

seq1  ACTGAACAATTTATCACCTAGAATCTGAATTTAAATACACAAACTAAAAT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACAATTTATCACCTAGAATCTGAATTTAAATACACAAACTAAAAT  643

seq1  TCAGACAGCAAAACACTTCAGTGTAATGAGTAACACATTAGTGTCTCCAC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCAAAACACTTCAGTGTAATGAGTAACACATTAGTGTCTCCAC  693

seq1  TAAACAGTAGGCGGTGAGTCAACATTGCAATGTTCCGTGTCAAGGAAGAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAGGCGGTGAGTCAACATTGCAATGTTCCGTGTCAAGGAAGAT  743

seq1  CTCTATACATGTGTTGAGGGGCTTGCCGACATATCAAGATATATGTAGAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACATGTGTTGAGGGGCTTGCCGACATATCAAGATATATGTAGAA  793

seq1  ATATGTAGCACGTACTACAAGCAGCGGCAGAATAGGTGATGAGGATCCAC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCACGTACTACAAGCAGCGGCAGAATAGGTGATGAGGATCCAC  843

seq1  CGCTTTAGACAGCACGACAGAAACTGAGTGGACAAAAGGCAACAGCCCAG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTAGACAGCACGACAGAAACTGAGTGGACAAAAGGCAACAGCCCAG  893

seq1  CACTCATGGCGGGTCGCTCACAAGAGAAGACCGTTACAGTGTTAGCCAAA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGGCGGGTCGCTCACAAGAGAAGACCGTTACAGTGTTAGCCAAA  943

seq1  TCTTATCAACTGCTAGAAAGTGCAAAAGGATTCTAAACTGAGGAACCAAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAACTGCTAGAAAGTGCAAAAGGATTCTAAACTGAGGAACCAAA  993

seq1  CTGTAATGCGTTTTTAAAAAATTGGAATATTATTAGATTTTACTTAGGAA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGCGTTTTTAAAAAATTGGAATATTATTAGATTTTACTTAGGAA  1043

seq1  ATACACATTTTGTTCGAATGTCTATGTACTGAAAACTAAAGAAAATACGT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTTTGTTCGAATGTCTATGTACTGAAAACTAAAGAAAATACGT  1093

seq1  CTCTGAAAAAATATATAAATAAATGCAATATGGGTATAAAGTCAAACATA  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAAAATATATAAATAAATGCAATATGGGTATAAAGTCAAACATA  1143

seq1  TTAAGTAAAATTCTAAACAAACTTTTCCCTCCTGAATTC  1167
      |||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAAATTCTAAACAAACTTTTCCCTCCTGAATTC  1182